# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_42 - 105 Cons_hypoth95 PF03602.10 183 3e-05 15.4 0.0 1 1 6.8e-07 3.4e-05 15.2 0.0 75 131 20 78 13 94 0.75 # 30687 # 31001 # 1 # ID=1_42;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.483 1_2 - 195 HTH_IclR PF09339.5 52 5.9e-05 14.6 0.0 1 1 3.9e-06 0.0002 13.0 0.0 16 39 165 187 158 188 0.83 # 146 # 730 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.487 1_34 - 877 ABC_tran PF00005.22 137 1.5e-06 20.5 0.0 1 1 2.7e-07 4.7e-06 18.9 0.0 4 42 487 525 485 610 0.83 # 25265 # 27895 # -1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.483 1_26 - 344 ABC_tran PF00005.22 137 1.1e-05 17.7 0.0 1 1 1.1e-06 1.9e-05 16.9 0.0 11 61 174 224 166 293 0.67 # 19197 # 20228 # -1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.501 1_21 - 526 ABC_tran PF00005.22 137 0.00028 13.2 0.1 1 1 3.8e-05 0.00065 12.0 0.1 10 32 123 145 120 167 0.87 # 13213 # 14790 # 1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.439 1_2 - 195 HTH_22 PF13309.1 64 4.9e-07 21.5 0.1 1 1 3.1e-08 1.6e-06 19.8 0.0 45 63 169 187 167 188 0.93 # 146 # 730 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.487 1_2 - 195 HTH_AsnC-type PF13404.1 42 1.1e-06 20.2 0.6 1 1 6.3e-08 3.2e-06 18.6 0.0 9 36 158 185 150 188 0.90 # 146 # 730 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.487 1_26 - 344 Sigma54_activat PF00158.21 168 1.5e-05 16.5 0.0 1 1 6.6e-07 3.3e-05 15.3 0.0 12 76 164 231 158 242 0.79 # 19197 # 20228 # -1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.501 1_2 - 195 HTH_DeoR PF08220.7 57 3.8e-05 15.2 0.0 1 1 1.8e-06 9.1e-05 14.0 0.0 9 33 161 185 155 188 0.84 # 146 # 730 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.487 1_26 - 344 FtsK_SpoIIIE PF01580.13 205 7.4e-07 20.8 0.0 1 1 7.1e-08 1.2e-06 20.1 0.0 32 62 168 198 153 203 0.80 # 19197 # 20228 # -1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.501 1_34 - 877 FtsK_SpoIIIE PF01580.13 205 4.6e-06 18.2 0.0 1 1 8.2e-07 1.4e-05 16.6 0.0 36 67 480 522 451 528 0.73 # 25265 # 27895 # -1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.483 1_21 - 526 FtsK_SpoIIIE PF01580.13 205 5.7e-06 17.9 0.0 1 1 1.2e-06 2.1e-05 16.0 0.0 39 71 122 157 93 177 0.80 # 13213 # 14790 # 1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.439 1_2 - 195 HTH_38 PF13936.1 44 9.5e-09 26.7 0.1 1 1 9.3e-10 2.4e-08 25.5 0.0 3 41 148 187 146 188 0.94 # 146 # 730 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.487 1_9 - 101 HTH_38 PF13936.1 44 2.3e-06 19.1 0.1 1 1 4.9e-07 1.3e-05 16.8 0.1 17 43 33 59 2 59 0.70 # 5646 # 5948 # 1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.479 1_2 - 195 SpoIIID PF12116.3 82 2.5e-05 16.1 0.5 1 1 2.3e-06 0.00012 14.0 0.0 11 41 158 188 153 190 0.85 # 146 # 730 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.487 1_26 - 344 MobB PF03205.9 140 0.00021 13.0 0.0 1 1 9.4e-06 0.00048 11.8 0.0 3 28 177 202 175 216 0.77 # 19197 # 20228 # -1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.501 1_2 - 195 HTH_34 PF13601.1 80 0.00039 12.5 0.0 1 3 0.0074 0.38 2.9 0.0 21 42 7 28 2 60 0.87 # 146 # 730 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.487 1_2 - 195 HTH_34 PF13601.1 80 0.00039 12.5 0.0 2 3 0.018 0.93 1.6 0.0 3 27 81 104 79 116 0.83 # 146 # 730 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.487 1_2 - 195 HTH_34 PF13601.1 80 0.00039 12.5 0.0 3 3 0.0037 0.19 3.8 0.0 8 35 160 187 156 189 0.91 # 146 # 730 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.487 1_2 - 195 MarR PF01047.17 59 2.4e-05 16.0 0.0 1 1 9.6e-07 4.9e-05 15.0 0.0 14 38 163 187 150 188 0.88 # 146 # 730 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.487 1_2 - 195 HTH_Tnp_4 PF13613.1 53 9.1e-05 14.0 0.0 1 1 4.2e-06 0.00022 12.8 0.0 22 40 169 187 167 188 0.86 # 146 # 730 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.487 1_42 - 105 Ribosomal_L29 PF00831.18 58 0.00039 12.1 0.8 1 1 1.1e-05 0.00054 11.6 0.8 9 32 23 46 19 59 0.87 # 30687 # 31001 # 1 # ID=1_42;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.483 1_2 - 195 TetR_N PF00440.18 47 1.6e-06 19.7 0.0 1 1 6.9e-08 3.5e-06 18.6 0.0 17 36 167 186 165 186 0.95 # 146 # 730 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.487 1_2 - 195 Sigma70_r4_2 PF08281.7 54 8.2e-05 14.0 1.2 1 1 4e-06 0.0001 13.7 0.0 28 47 168 187 166 188 0.92 # 146 # 730 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.487 1_19 - 163 Sigma70_r4_2 PF08281.7 54 0.00024 12.6 0.0 1 1 1.7e-05 0.00045 11.7 0.0 26 54 44 78 43 78 0.95 # 11998 # 12486 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.403 1_18 - 237 YhjQ PF06564.7 244 0.00013 13.3 0.0 1 1 5e-06 0.00025 12.4 0.0 51 129 144 224 111 235 0.85 # 11275 # 11985 # -1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.429 1_21 - 526 AAA_23 PF13476.1 202 0.00015 14.1 0.0 1 1 5.8e-06 0.00029 13.1 0.0 24 56 129 163 126 277 0.70 # 13213 # 14790 # 1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.439 1_26 - 344 Zeta_toxin PF06414.7 201 4.7e-05 14.5 0.0 1 1 1.8e-06 9.1e-05 13.5 0.0 15 51 173 209 163 211 0.88 # 19197 # 20228 # -1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.501 1_22 - 970 AAA_30 PF13604.1 196 7.7e-51 164.4 0.9 1 1 1.5e-52 7.7e-51 164.4 0.9 1 184 475 650 475 658 0.98 # 14793 # 17702 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.514 1_9 - 101 GerE PF00196.14 58 0.00017 12.9 0.0 1 1 5.6e-06 0.00029 12.2 0.0 15 42 33 60 30 65 0.90 # 5646 # 5948 # 1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.479 1_21 - 526 TraG-D_C PF12696.2 128 2.1e-22 71.3 0.0 1 1 6.2e-24 3.2e-22 70.8 0.0 3 127 360 481 358 482 0.85 # 13213 # 14790 # 1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.439 1_26 - 344 TIGR03263 TIGR03263 180 0.00048 11.4 0.0 1 1 1.8e-05 0.00092 10.5 0.0 4 27 177 200 174 210 0.83 # 19197 # 20228 # -1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.501 1_2 - 195 Sigma70_r4 PF04545.11 50 2.3e-05 15.7 0.0 1 1 9.9e-07 5e-05 14.6 0.0 18 37 164 183 152 188 0.84 # 146 # 730 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.487 1_22 - 970 AAA PF00004.24 132 2.8e-06 19.5 0.0 1 1 1.6e-07 8.1e-06 18.0 0.0 3 74 497 575 495 593 0.66 # 14793 # 17702 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.514 1_2 - 195 HTH_37 PF13744.1 80 0.00036 12.3 0.0 1 1 2.1e-05 0.0011 10.8 0.0 20 48 155 183 149 192 0.91 # 146 # 730 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.487 1_3 - 296 RepA_C PF04796.7 161 1.8e-45 146.4 0.0 1 1 4.6e-47 2.4e-45 146.0 0.0 1 160 80 233 80 234 0.92 # 763 # 1650 # 1 # ID=1_3;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.502 1_2 - 195 MRP-L20 PF12824.2 164 1.5e-05 17.0 0.0 1 1 4.8e-07 2.4e-05 16.3 0.0 69 121 133 183 115 192 0.77 # 146 # 730 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.487 1_22 - 970 Torsin PF06309.6 127 1.3e-05 17.0 0.0 1 1 5.9e-07 3e-05 15.9 0.0 55 88 494 527 473 553 0.82 # 14793 # 17702 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.514 1_26 - 344 cobW PF02492.14 178 7.8e-05 14.1 0.0 1 1 3.1e-06 0.00016 13.1 0.0 3 43 177 216 175 342 0.87 # 19197 # 20228 # -1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.501 1_26 - 344 AAA_16 PF13191.1 185 2.5e-05 16.3 0.0 1 1 2.8e-06 4.7e-05 15.4 0.0 25 51 175 201 155 225 0.81 # 19197 # 20228 # -1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.501 1_22 - 970 AAA_16 PF13191.1 185 2.5e-05 16.2 0.6 1 1 1.3e-05 0.00021 13.2 0.0 12 59 481 527 472 553 0.72 # 14793 # 17702 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.514 1_34 - 877 AAA_16 PF13191.1 185 0.00053 12.0 0.0 1 1 0.00039 0.0066 8.4 0.0 27 49 497 519 488 547 0.85 # 25265 # 27895 # -1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.483 1_22 - 970 AAA_22 PF13401.1 131 2.9e-05 16.2 0.2 1 1 0.00018 0.0031 9.6 0.0 5 56 493 551 489 602 0.67 # 14793 # 17702 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.514 1_26 - 344 AAA_22 PF13401.1 131 5.2e-05 15.4 0.0 1 1 7.9e-06 0.00013 14.0 0.0 4 29 174 199 171 243 0.83 # 19197 # 20228 # -1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.501 1_34 - 877 AAA_22 PF13401.1 131 0.00027 13.1 0.1 1 1 0.00014 0.0023 10.0 0.0 6 29 496 519 494 584 0.86 # 25265 # 27895 # -1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.483 1_21 - 526 AAA_29 PF13555.1 62 6e-05 14.6 0.1 1 1 7.7e-06 0.00013 13.5 0.1 18 40 119 141 112 154 0.84 # 13213 # 14790 # 1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.439 1_26 - 344 AAA_29 PF13555.1 62 6.8e-05 14.4 0.2 1 1 9e-06 0.00015 13.2 0.2 24 39 174 190 164 195 0.78 # 19197 # 20228 # -1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.501 1_34 - 877 AAA_29 PF13555.1 62 9.8e-05 13.9 0.0 1 1 1.4e-05 0.00023 12.7 0.0 25 41 496 512 484 524 0.81 # 25265 # 27895 # -1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.483 1_2 - 195 HTH_Tnp_IS630 PF01710.11 120 0.00018 13.1 0.0 1 2 0.011 0.58 1.8 0.0 52 84 88 124 79 164 0.65 # 146 # 730 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.487 1_2 - 195 HTH_Tnp_IS630 PF01710.11 120 0.00018 13.1 0.0 2 2 7.4e-05 0.0038 8.9 0.0 65 90 160 185 134 190 0.64 # 146 # 730 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.487 1_26 - 344 AAA_28 PF13521.1 163 0.00041 12.3 0.0 1 1 1.8e-05 0.00093 11.1 0.0 1 33 176 212 176 237 0.78 # 19197 # 20228 # -1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.501 1_2 - 195 HTH_32 PF13565.1 77 2.1e-08 26.9 0.7 1 2 0.096 4.9 0.1 0.0 24 43 38 59 18 92 0.58 # 146 # 730 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.487 1_2 - 195 HTH_32 PF13565.1 77 2.1e-08 26.9 0.7 2 2 2.6e-09 1.4e-07 24.3 0.1 8 76 125 186 122 187 0.80 # 146 # 730 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.487 1_2 - 195 GntR PF00392.16 64 0.00018 12.9 0.0 1 1 1.1e-05 0.00056 11.3 0.0 26 41 168 183 161 187 0.91 # 146 # 730 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.487 1_2 - 195 HTH_23 PF13384.1 50 4.4e-07 21.5 0.0 1 1 4e-08 1e-06 20.3 0.0 17 37 166 186 157 188 0.84 # 146 # 730 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.487 1_9 - 101 HTH_23 PF13384.1 50 8.1e-05 14.3 0.1 1 1 5.8e-06 0.00015 13.4 0.1 14 40 32 59 7 63 0.86 # 5646 # 5948 # 1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.479 1_2 - 195 HTH_7 PF02796.10 45 1.1e-14 46.0 0.0 1 1 7.2e-16 3.7e-14 44.4 0.0 1 40 145 185 145 190 0.98 # 146 # 730 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.487 1_2 - 195 HTH_29 PF13551.1 112 8.7e-07 21.1 0.9 1 2 0.00019 0.0099 8.0 0.1 38 73 131 165 122 167 0.80 # 146 # 730 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.487 1_2 - 195 HTH_29 PF13551.1 112 8.7e-07 21.1 0.9 2 2 2.6e-05 0.0013 10.9 0.0 14 33 168 187 163 189 0.90 # 146 # 730 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.487 1_22 - 970 PhoH PF02562.11 205 1.3e-08 26.2 0.9 1 3 7.7e-06 0.00039 11.6 0.0 8 46 479 518 474 526 0.73 # 14793 # 17702 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.514 1_22 - 970 PhoH PF02562.11 205 1.3e-08 26.2 0.9 2 3 5.4e-05 0.0028 8.8 0.0 121 161 561 602 559 628 0.82 # 14793 # 17702 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.514 1_22 - 970 PhoH PF02562.11 205 1.3e-08 26.2 0.9 3 3 0.015 0.76 0.9 0.0 111 179 856 923 849 933 0.80 # 14793 # 17702 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.514 1_16 - 257 SprT-like PF10263.4 157 1.7e-30 97.7 0.0 1 1 6.5e-32 3.3e-30 96.8 0.0 1 151 12 231 12 238 0.93 # 9921 # 10691 # -1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.536 1_21 - 526 TrwB_AAD_bind PF10412.4 386 5.7e-117 382.5 0.0 1 1 3.9e-118 6.7e-117 382.2 0.0 1 384 110 499 110 501 0.98 # 13213 # 14790 # 1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.439 1_34 - 877 TrwB_AAD_bind PF10412.4 386 6.4e-07 20.2 0.0 1 2 9.4e-07 1.6e-05 15.6 0.0 15 54 494 533 488 540 0.89 # 25265 # 27895 # -1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.483 1_34 - 877 TrwB_AAD_bind PF10412.4 386 6.4e-07 20.2 0.0 2 2 0.012 0.2 2.1 0.0 241 320 704 784 691 817 0.80 # 25265 # 27895 # -1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.483 1_26 - 344 TrwB_AAD_bind PF10412.4 386 4.8e-05 14.0 0.0 1 1 4.2e-06 7.2e-05 13.4 0.0 14 40 173 199 168 235 0.88 # 19197 # 20228 # -1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.501 1_26 - 344 AAA_18 PF13238.1 129 9.2e-06 18.0 0.0 1 1 7.2e-07 1.8e-05 17.0 0.0 1 33 177 221 177 252 0.75 # 19197 # 20228 # -1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.501 1_21 - 526 AAA_18 PF13238.1 129 0.0002 13.6 0.0 1 1 1.7e-05 0.00043 12.6 0.0 1 40 127 168 127 210 0.73 # 13213 # 14790 # 1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.439 1_26 - 344 DUF258 PF03193.11 161 3.2e-05 15.1 0.0 1 2 0.0072 0.18 2.9 0.0 13 59 45 95 37 141 0.75 # 19197 # 20228 # -1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.501 1_26 - 344 DUF258 PF03193.11 161 3.2e-05 15.1 0.0 2 2 5.7e-05 0.0015 9.7 0.0 29 59 167 198 145 222 0.75 # 19197 # 20228 # -1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.501 1_34 - 877 DUF258 PF03193.11 161 3.6e-05 15.0 0.0 1 1 2.7e-06 7e-05 14.0 0.0 37 59 496 518 469 548 0.88 # 25265 # 27895 # -1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.483 1_21 - 526 DUF87 PF01935.12 229 9.1e-10 30.6 0.0 1 1 1e-10 1.7e-09 29.7 0.0 24 79 125 188 103 388 0.88 # 13213 # 14790 # 1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.439 1_26 - 344 DUF87 PF01935.12 229 1.2e-05 17.2 0.0 1 1 1.4e-06 2.3e-05 16.2 0.0 28 47 179 198 167 211 0.91 # 19197 # 20228 # -1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.501 1_34 - 877 DUF87 PF01935.12 229 9.9e-05 14.2 0.1 1 1 4.7e-05 0.0008 11.2 0.0 25 60 496 530 494 533 0.92 # 25265 # 27895 # -1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.483 1_2 - 195 HTH_28 PF13518.1 52 4.8e-07 21.7 0.1 1 1 2.8e-08 1.4e-06 20.2 0.0 13 32 166 186 158 188 0.84 # 146 # 730 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.487 1_2 - 195 HTH_24 PF13412.1 48 1.5e-08 25.9 0.1 1 1 1.4e-09 7e-08 23.8 0.0 9 38 158 187 150 188 0.94 # 146 # 730 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.487 1_26 - 344 Sigma54_activ_2 PF14532.1 138 0.00017 13.6 0.0 1 1 1.5e-05 0.00077 11.5 0.0 15 63 168 216 161 223 0.84 # 19197 # 20228 # -1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.501 1_3 - 296 RPA PF10134.4 229 6.2e-05 14.3 0.0 1 1 2.6e-06 0.00013 13.2 0.0 53 112 92 147 88 205 0.79 # 763 # 1650 # 1 # ID=1_3;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.502 1_2 - 195 HTH_10 PF04967.7 53 1.8e-05 16.3 0.0 1 1 1.2e-06 6.4e-05 14.5 0.0 23 44 166 187 164 189 0.93 # 146 # 730 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.487 1_26 - 344 Miro PF08477.8 119 0.00017 14.1 0.0 1 1 7e-06 0.00036 13.0 0.0 2 25 177 200 176 230 0.74 # 19197 # 20228 # -1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.501 1_22 - 970 UvrD_C_2 PF13538.1 104 4.4e-16 50.9 1.2 1 2 0.017 0.89 1.8 0.1 31 67 228 271 212 287 0.68 # 14793 # 17702 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.514 1_22 - 970 UvrD_C_2 PF13538.1 104 4.4e-16 50.9 1.2 2 2 2.9e-16 1.5e-14 46.0 0.1 3 103 796 895 794 896 0.76 # 14793 # 17702 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.514 1_26 - 344 IIGP PF05049.8 376 0.00018 12.3 0.0 1 1 5.9e-06 0.0003 11.6 0.0 32 55 171 194 161 203 0.84 # 19197 # 20228 # -1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.501 1_26 - 344 T2SE PF00437.15 272 1.5e-48 157.0 0.0 1 1 3.4e-50 1.7e-48 156.7 0.0 2 269 25 323 24 326 0.91 # 19197 # 20228 # -1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.501 1_34 - 877 NACHT PF05729.7 166 0.00043 11.9 0.0 1 1 2.3e-05 0.0012 10.5 0.0 4 80 498 574 496 620 0.81 # 25265 # 27895 # -1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.483 1_26 - 344 UPF0079 PF02367.12 123 0.00033 12.3 0.0 1 1 1.7e-05 0.00087 10.9 0.0 18 44 177 203 164 210 0.80 # 19197 # 20228 # -1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.501 1_26 - 344 AAA_17 PF13207.1 121 1.5e-05 17.8 0.0 1 1 1.7e-06 4.4e-05 16.3 0.0 2 27 177 200 176 261 0.79 # 19197 # 20228 # -1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.501 1_21 - 526 AAA_17 PF13207.1 121 0.00021 14.1 0.0 1 2 0.00019 0.0048 9.7 0.0 2 21 127 146 126 240 0.74 # 13213 # 14790 # 1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.439 1_21 - 526 AAA_17 PF13207.1 121 0.00021 14.1 0.0 2 2 0.053 1.4 1.8 0.0 15 97 292 370 286 390 0.58 # 13213 # 14790 # 1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.439 1_21 - 526 AAA_25 PF13481.1 194 5.2e-05 14.7 0.0 1 2 9.6e-06 0.00049 11.5 0.0 32 60 123 152 95 203 0.77 # 13213 # 14790 # 1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.439 1_21 - 526 AAA_25 PF13481.1 194 5.2e-05 14.7 0.0 2 2 0.055 2.8 -0.8 0.0 77 107 441 473 438 493 0.78 # 13213 # 14790 # 1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.439 1_22 - 970 Viral_helicase1 PF01443.13 234 2.7e-19 61.5 0.3 1 2 1.3e-11 3.3e-10 31.8 0.0 2 104 496 603 495 654 0.85 # 14793 # 17702 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.514 1_22 - 970 Viral_helicase1 PF01443.13 234 2.7e-19 61.5 0.3 2 2 2.8e-10 7.1e-09 27.4 0.1 184 234 851 897 780 897 0.79 # 14793 # 17702 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.514 1_26 - 344 Viral_helicase1 PF01443.13 234 7.1e-05 14.3 0.0 1 1 4.7e-06 0.00012 13.6 0.0 1 22 177 198 177 224 0.79 # 19197 # 20228 # -1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.501 1_26 - 344 Pox_A32 PF04665.7 241 0.00026 12.3 0.2 1 1 1.1e-05 0.00055 11.2 0.0 11 37 172 198 165 206 0.85 # 19197 # 20228 # -1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.501 1_21 - 526 AAA_14 PF13173.1 128 1.3e-05 17.1 0.0 1 2 6.5e-06 0.00033 12.5 0.0 5 82 127 213 123 226 0.66 # 13213 # 14790 # 1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.439 1_21 - 526 AAA_14 PF13173.1 128 1.3e-05 17.1 0.0 2 2 0.012 0.6 2.0 0.0 33 100 321 396 304 410 0.62 # 13213 # 14790 # 1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.439 1_2 - 195 HTH_Tnp_ISL3 PF13542.1 52 0.00052 11.2 0.0 1 1 2.4e-05 0.0012 10.0 0.0 24 47 162 186 158 188 0.81 # 146 # 730 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.487 1_26 - 344 AAA_33 PF13671.1 143 3.7e-06 18.8 0.0 1 1 2.8e-07 1.4e-05 16.9 0.0 2 32 177 210 177 268 0.79 # 19197 # 20228 # -1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.501 1_21 - 526 T4SS-DNA_transf PF02534.9 469 6.1e-16 49.9 0.0 1 1 2.4e-17 1.2e-15 48.9 0.0 304 438 358 494 306 501 0.82 # 13213 # 14790 # 1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.439 1_26 - 344 RNA_helicase PF00910.17 107 0.00014 14.1 0.0 1 1 6.4e-06 0.00033 12.8 0.0 1 23 177 199 177 229 0.83 # 19197 # 20228 # -1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.501 1_34 - 877 PduV-EutP PF10662.4 143 5.3e-05 14.7 0.1 1 1 3e-06 0.00015 13.2 0.1 4 29 497 522 494 525 0.92 # 25265 # 27895 # -1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.483 1_2 - 195 HTH_17 PF12728.2 51 3.3e-07 22.5 0.0 1 1 2e-08 1e-06 21.0 0.0 2 22 167 187 166 190 0.94 # 146 # 730 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.487 1_2 - 195 HTH_11 PF08279.7 55 4.4e-10 31.1 1.2 1 2 0.037 1.9 0.3 0.2 2 25 77 101 76 102 0.77 # 146 # 730 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.487 1_2 - 195 HTH_11 PF08279.7 55 4.4e-10 31.1 1.2 2 2 7.4e-11 3.8e-09 28.1 0.0 13 36 163 187 153 188 0.84 # 146 # 730 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.487 1_2 - 195 MarR_2 PF12802.2 62 8.9e-06 17.3 0.0 1 1 4.7e-07 2.4e-05 16.0 0.0 11 41 158 186 143 188 0.86 # 146 # 730 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.487 1_22 - 970 PIF1 PF05970.9 364 5.7e-06 17.4 0.6 1 2 5.4e-07 2.7e-05 15.1 0.1 5 60 479 530 475 586 0.77 # 14793 # 17702 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.514 1_22 - 970 PIF1 PF05970.9 364 5.7e-06 17.4 0.6 2 2 0.063 3.2 -1.6 0.0 333 362 792 820 781 822 0.86 # 14793 # 17702 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.514 1_2 - 195 HTH_5 PF01022.15 47 1.8e-06 19.6 0.0 1 1 1.1e-07 5.6e-06 18.0 0.0 9 35 159 186 156 188 0.89 # 146 # 730 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.487 1_2 - 195 TrmB PF01978.14 68 3.6e-08 25.0 0.0 1 1 1.4e-09 7.1e-08 24.1 0.0 6 43 150 187 147 188 0.90 # 146 # 730 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.487 1_2 - 195 UPF0122 PF04297.9 101 8.1e-05 14.6 0.1 1 1 5.2e-06 0.00027 13.0 0.0 34 55 167 188 156 192 0.89 # 146 # 730 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.487 1_2 - 195 HTH_Mga PF08280.6 59 0.00013 13.7 0.0 1 1 9.6e-06 0.00049 11.9 0.0 11 36 158 183 153 188 0.89 # 146 # 730 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.487 1_34 - 877 AAA_10 PF12846.2 304 1.8e-35 114.7 0.1 1 3 0.092 1.6 -0.0 0.0 101 160 98 168 18 210 0.65 # 25265 # 27895 # -1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.483 1_34 - 877 AAA_10 PF12846.2 304 1.8e-35 114.7 0.1 2 3 0.027 0.47 1.7 0.0 56 114 304 371 285 410 0.80 # 25265 # 27895 # -1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.483 1_34 - 877 AAA_10 PF12846.2 304 1.8e-35 114.7 0.1 3 3 6.3e-35 1.1e-33 108.9 0.0 2 304 495 790 494 790 0.87 # 25265 # 27895 # -1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.483 1_21 - 526 AAA_10 PF12846.2 304 2.5e-09 28.9 0.1 1 2 2.3e-07 3.9e-06 18.4 0.1 3 43 126 175 124 192 0.89 # 13213 # 14790 # 1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.439 1_21 - 526 AAA_10 PF12846.2 304 2.5e-09 28.9 0.1 2 2 0.00025 0.0043 8.4 0.0 240 289 373 425 322 439 0.76 # 13213 # 14790 # 1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.439 1_26 - 344 AAA_10 PF12846.2 304 4.8e-05 14.8 0.0 1 1 4.6e-06 7.7e-05 14.1 0.0 3 26 176 199 174 234 0.82 # 19197 # 20228 # -1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.501 1_2 - 195 HTH_20 PF12840.2 61 7.5e-06 17.7 0.0 1 3 0.026 1.3 0.9 0.0 39 52 15 28 11 29 0.86 # 146 # 730 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.487 1_2 - 195 HTH_20 PF12840.2 61 7.5e-06 17.7 0.0 2 3 0.071 3.6 -0.5 0.0 17 43 85 112 72 114 0.69 # 146 # 730 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.487 1_2 - 195 HTH_20 PF12840.2 61 7.5e-06 17.7 0.0 3 3 7.6e-06 0.00039 12.2 0.0 23 45 165 187 158 188 0.88 # 146 # 730 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.487 1_26 - 344 Septin PF00735.13 281 0.00017 12.6 0.0 1 1 5.3e-06 0.00027 11.9 0.0 4 33 174 203 172 228 0.82 # 19197 # 20228 # -1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.501 1_8 - 160 SSB PF00436.20 104 8.6e-45 142.9 0.8 1 1 2.1e-46 1e-44 142.6 0.8 1 103 6 112 6 113 0.97 # 5099 # 5578 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.548 # # Program: hmmsearch # Version: 3.1b1 (May 2013) # Pipeline mode: SEARCH # Query file: /tmp/11abde62-95bd-4bad-841e-ea4197f18670 # Target file: checkm_output/bins/pm475/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm475/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/11abde62-95bd-4bad-841e-ea4197f18670 checkm_output/bins/pm475/genes.faa # Current dir: /mnt/data/azomer/reads-for-assembly/files/output/allcontigs/output_1512029421078392887 # Date: Thu Nov 30 10:06:56 2017 # [ok]