# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_19 - 654 Cons_hypoth95 PF03602.10 183 2.1e-06 20.2 0.3 1 2 4.4e-06 0.00046 12.6 0.1 95 128 103 137 82 152 0.66 # 21536 # 23497 # 1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=4Base/6BMM;rbs_spacer=13-15bp;gc_cont=0.359 1_19 - 654 Cons_hypoth95 PF03602.10 183 2.1e-06 20.2 0.3 2 2 0.0012 0.13 4.6 0.0 44 61 437 453 429 512 0.78 # 21536 # 23497 # 1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=4Base/6BMM;rbs_spacer=13-15bp;gc_cont=0.359 1_64 - 455 KaiC PF06745.8 227 1.2e-06 20.7 0.0 1 1 2.9e-08 3.1e-06 19.4 0.0 4 66 185 253 183 277 0.87 # 55609 # 56973 # -1 # ID=1_64;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.483 1_19 - 654 TIGR00095 TIGR00095 194 1.9e-05 17.0 0.5 1 2 7.6e-06 0.0008 11.7 0.0 116 138 115 137 84 148 0.67 # 21536 # 23497 # 1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=4Base/6BMM;rbs_spacer=13-15bp;gc_cont=0.359 1_19 - 654 TIGR00095 TIGR00095 194 1.9e-05 17.0 0.5 2 2 0.0084 0.89 1.8 0.0 53 65 436 448 432 457 0.82 # 21536 # 23497 # 1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=4Base/6BMM;rbs_spacer=13-15bp;gc_cont=0.359 1_16 - 2256 N6_Mtase PF02384.11 311 6.4e-10 31.5 0.0 1 1 7.4e-11 7.7e-09 27.9 0.0 93 247 145 289 72 295 0.76 # 13919 # 20686 # 1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.520 1_64 - 455 FtsK_SpoIIIE PF01580.13 205 0.00033 13.1 0.2 1 2 8.6e-05 0.0091 8.4 0.0 40 66 208 234 184 242 0.82 # 55609 # 56973 # -1 # ID=1_64;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.483 1_64 - 455 FtsK_SpoIIIE PF01580.13 205 0.00033 13.1 0.2 2 2 0.012 1.2 1.4 0.1 71 124 319 366 313 400 0.74 # 55609 # 56973 # -1 # ID=1_64;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.483 1_16 - 2256 Helicase_C PF00271.26 78 7e-09 28.5 0.0 1 1 1.6e-10 1.7e-08 27.2 0.0 16 78 1454 1517 1435 1517 0.86 # 13919 # 20686 # 1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.520 1_78 - 334 HTH_38 PF13936.1 44 7.6e-05 15.3 0.3 1 2 0.052 5.5 -0.3 0.0 19 30 147 158 130 160 0.75 # 70247 # 71248 # 1 # ID=1_78;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.443 1_78 - 334 HTH_38 PF13936.1 44 7.6e-05 15.3 0.3 2 2 3.6e-06 0.00038 13.0 0.3 12 34 157 179 151 187 0.86 # 70247 # 71248 # 1 # ID=1_78;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.443 1_78 - 334 MarR PF01047.17 59 0.00061 12.5 0.0 1 1 1.5e-05 0.0016 11.2 0.0 15 38 163 186 157 188 0.92 # 70247 # 71248 # 1 # ID=1_78;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.443 1_92 - 180 DUF3584 PF12128.3 1201 0.016 5.4 32.1 1 1 0.00019 0.02 5.1 32.1 605 752 19 172 13 178 0.74 # 82906 # 83445 # 1 # ID=1_92;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.431 1_64 - 455 AAA_19 PF13245.1 76 0.00091 12.0 0.0 1 1 2.5e-05 0.0026 10.5 0.0 10 48 206 241 199 264 0.82 # 55609 # 56973 # -1 # ID=1_64;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.483 1_77 - 399 CbiA PF01656.18 195 1.1e-20 66.8 0.0 1 1 1.8e-22 1.9e-20 66.0 0.0 1 144 111 294 111 322 0.75 # 69034 # 70230 # 1 # ID=1_77;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.456 1_69 - 1096 MethyltransfD12 PF02086.10 260 3.2e-56 183.6 0.0 1 1 9.6e-58 5e-56 182.9 0.0 1 245 834 1063 834 1076 0.94 # 59802 # 63089 # -1 # ID=1_69;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.472 1_19 - 654 MethyltransfD12 PF02086.10 260 7.8e-06 18.4 0.5 1 2 8.5e-06 0.00044 12.7 0.1 155 202 98 145 11 164 0.70 # 21536 # 23497 # 1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=4Base/6BMM;rbs_spacer=13-15bp;gc_cont=0.359 1_19 - 654 MethyltransfD12 PF02086.10 260 7.8e-06 18.4 0.5 2 2 0.016 0.85 1.9 0.0 195 229 615 649 607 652 0.86 # 21536 # 23497 # 1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=4Base/6BMM;rbs_spacer=13-15bp;gc_cont=0.359 1_78 - 334 Sigma70_r4_2 PF08281.7 54 0.00019 13.9 0.1 1 1 5e-06 0.00053 12.5 0.1 25 50 164 189 158 191 0.91 # 70247 # 71248 # 1 # ID=1_78;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.443 1_75 - 295 Rep_3 PF01051.16 222 2.1e-20 66.2 0.3 1 1 2.5e-22 2.7e-20 65.9 0.3 6 215 26 285 22 290 0.89 # 66879 # 67763 # 1 # ID=1_75;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.455 1_63 - 333 Glyco_trans_1_2 PF13524.1 92 0.00011 15.5 0.0 1 1 4.4e-06 0.00046 13.5 0.0 6 66 245 306 230 322 0.72 # 54611 # 55609 # -1 # ID=1_63;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.486 1_44 - 242 AAA_23 PF13476.1 202 3.3e-05 17.3 0.5 1 2 3.3e-05 0.0035 10.6 0.0 116 199 32 156 3 160 0.74 # 41960 # 42685 # -1 # ID=1_44;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.507 1_44 - 242 AAA_23 PF13476.1 202 3.3e-05 17.3 0.5 2 2 0.0014 0.14 5.3 0.3 19 40 163 186 155 191 0.76 # 41960 # 42685 # -1 # ID=1_44;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.507 1_16 - 2256 Methyltransf_26 PF13659.1 117 1.3e-09 31.2 1.0 1 1 2.4e-10 8.5e-09 28.5 0.0 5 116 116 225 113 226 0.81 # 13919 # 20686 # 1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.520 1_69 - 1096 Methyltransf_26 PF13659.1 117 1.9e-05 17.7 0.0 1 1 1.3e-06 4.7e-05 16.4 0.0 1 83 852 1011 852 1061 0.69 # 59802 # 63089 # -1 # ID=1_69;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.472 1_19 - 654 Methyltransf_26 PF13659.1 117 7.4e-05 15.8 0.0 1 2 0.017 0.6 3.2 0.0 66 112 119 203 52 208 0.69 # 21536 # 23497 # 1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=4Base/6BMM;rbs_spacer=13-15bp;gc_cont=0.359 1_19 - 654 Methyltransf_26 PF13659.1 117 7.4e-05 15.8 0.0 2 2 0.00014 0.0049 9.9 0.0 3 76 438 556 436 605 0.61 # 21536 # 23497 # 1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=4Base/6BMM;rbs_spacer=13-15bp;gc_cont=0.359 1_52 - 226 TIGR00668 TIGR00668 279 4.3e-17 55.0 0.0 1 2 9.3e-18 9.8e-16 50.6 0.0 4 72 19 85 16 155 0.88 # 46816 # 47493 # -1 # ID=1_52;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.488 1_52 - 226 TIGR00668 TIGR00668 279 4.3e-17 55.0 0.0 2 2 0.004 0.42 2.6 0.0 216 257 178 218 170 222 0.75 # 46816 # 47493 # -1 # ID=1_52;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.488 1_77 - 399 MipZ PF09140.6 261 6.5e-09 28.2 0.1 1 2 4.6e-05 0.0049 8.9 0.0 1 51 109 164 109 186 0.77 # 69034 # 70230 # 1 # ID=1_77;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.456 1_77 - 399 MipZ PF09140.6 261 6.5e-09 28.2 0.1 2 2 1.4e-07 1.5e-05 17.2 0.0 82 135 228 281 213 289 0.86 # 69034 # 70230 # 1 # ID=1_77;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.456 1_69 - 1096 UPF0020 PF01170.13 180 0.00021 13.9 0.0 1 2 0.0046 0.48 2.9 0.0 28 50 851 873 848 910 0.87 # 59802 # 63089 # -1 # ID=1_69;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.472 1_69 - 1096 UPF0020 PF01170.13 180 0.00021 13.9 0.0 2 2 0.00012 0.013 8.0 0.0 86 116 978 1008 973 1014 0.91 # 59802 # 63089 # -1 # ID=1_69;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.472 1_37 - 155 Ribosomal_L12 PF00542.14 68 0.00013 15.0 0.0 1 1 2.8e-06 0.00029 13.8 0.0 26 48 74 96 70 113 0.80 # 38551 # 39015 # -1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.368 1_6 - 640 DivIC PF04977.10 80 0.0078 8.7 12.9 1 2 0.017 1.8 1.2 4.2 17 56 205 244 196 250 0.62 # 2334 # 4253 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.518 1_6 - 640 DivIC PF04977.10 80 0.0078 8.7 12.9 2 2 1.3e-05 0.0013 11.2 2.0 20 55 250 287 246 290 0.85 # 2334 # 4253 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.518 1_78 - 334 Trp_repressor PF01371.14 88 0.00028 13.8 0.7 1 1 7.4e-06 0.00078 12.4 0.1 40 69 157 185 124 194 0.84 # 70247 # 71248 # 1 # ID=1_78;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.443 1_78 - 334 KorB PF08535.5 93 4.2e-05 16.7 0.0 1 1 3.8e-06 0.0004 13.6 0.0 2 38 164 200 163 213 0.91 # 70247 # 71248 # 1 # ID=1_78;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.443 1_16 - 2256 Eco57I PF07669.6 106 4.1e-05 16.9 0.0 1 1 1.6e-06 0.00017 14.9 0.0 3 101 174 271 172 276 0.87 # 13919 # 20686 # 1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.520 1_19 - 654 N6_N4_Mtase PF01555.13 231 1.9e-58 190.6 1.3 1 1 4e-60 4.2e-58 189.5 1.3 1 224 124 474 124 481 0.98 # 21536 # 23497 # 1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=4Base/6BMM;rbs_spacer=13-15bp;gc_cont=0.359 1_92 - 180 Mt_ATP-synt_B PF05405.9 163 0.0021 10.5 14.5 1 2 3.1e-06 0.00033 13.1 9.3 23 117 4 102 2 120 0.71 # 82906 # 83445 # 1 # ID=1_92;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.431 1_92 - 180 Mt_ATP-synt_B PF05405.9 163 0.0021 10.5 14.5 2 2 0.044 4.6 -0.4 0.8 61 70 133 142 107 175 0.47 # 82906 # 83445 # 1 # ID=1_92;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.431 1_63 - 333 Glyco_trans_1_4 PF13692.1 135 1.1e-06 21.8 0.1 1 2 0.029 3 1.0 0.0 84 132 22 69 9 72 0.69 # 54611 # 55609 # -1 # ID=1_63;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.486 1_63 - 333 Glyco_trans_1_4 PF13692.1 135 1.1e-06 21.8 0.1 2 2 1.2e-07 1.2e-05 18.4 0.0 54 105 216 271 192 318 0.76 # 54611 # 55609 # -1 # ID=1_63;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.486 1_87 - 270 HTH_AraC PF00165.18 42 0.00014 14.7 0.0 1 1 3.8e-06 0.0004 13.2 0.0 14 37 50 73 50 76 0.91 # 78677 # 79486 # -1 # ID=1_87;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.452 1_99 - 279 HI0933_like PF03486.9 409 0.00078 10.9 0.0 1 1 1.1e-05 0.0011 10.4 0.0 60 123 27 89 19 109 0.79 # 90901 # 91737 # 1 # ID=1_99;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.458 1_31 - 398 HTH_23 PF13384.1 50 7.3e-07 21.8 3.0 1 2 1.2e-07 6.5e-06 18.7 0.0 10 43 10 44 3 50 0.89 # 34730 # 35923 # -1 # ID=1_31;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.513 1_31 - 398 HTH_23 PF13384.1 50 7.3e-07 21.8 3.0 2 2 0.029 1.5 1.6 0.1 32 45 232 245 231 250 0.82 # 34730 # 35923 # -1 # ID=1_31;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.513 1_78 - 334 HTH_23 PF13384.1 50 0.00021 14.0 0.0 1 1 1.4e-05 0.00076 12.2 0.0 9 45 157 191 156 196 0.84 # 70247 # 71248 # 1 # ID=1_78;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.443 1_37 - 155 TIGR00855 TIGR00855 125 0.00067 12.8 0.0 1 1 9.5e-06 0.00099 12.2 0.0 83 105 74 96 46 113 0.88 # 38551 # 39015 # -1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.368 1_1 - 165 HTH_7 PF02796.10 45 2.4e-10 33.1 0.2 1 1 5.6e-12 5.9e-10 31.9 0.2 1 28 138 165 138 165 0.99 # 3 # 497 # -1 # ID=1_1;partial=10;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.507 1_31 - 398 HTH_29 PF13551.1 112 1.6e-06 21.2 0.2 1 2 1.9e-07 2e-05 17.8 0.1 5 93 11 86 7 102 0.72 # 34730 # 35923 # -1 # ID=1_31;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.513 1_31 - 398 HTH_29 PF13551.1 112 1.6e-06 21.2 0.2 2 2 0.067 7 -0.1 0.0 34 88 239 280 208 290 0.54 # 34730 # 35923 # -1 # ID=1_31;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.513 1_20 - 971 PhoH PF02562.11 205 0.00055 12.2 0.0 1 1 1.6e-05 0.0016 10.6 0.0 21 71 79 130 61 154 0.83 # 23500 # 26412 # 1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.348 1_14 - 340 AAA_5 PF07728.9 139 0.00058 12.6 0.1 1 1 1.4e-05 0.0014 11.3 0.1 12 91 175 266 173 291 0.93 # 11122 # 12141 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.517 1_20 - 971 ResIII PF04851.10 184 2.4e-21 69.3 1.8 1 1 2.3e-23 2.4e-21 69.3 1.8 11 183 65 257 45 258 0.84 # 23500 # 26412 # 1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.348 1_16 - 2256 SNF2_N PF00176.18 299 7.9e-18 57.2 0.0 1 1 1.8e-19 1.9e-17 55.9 0.0 27 293 849 1262 835 1268 0.85 # 13919 # 20686 # 1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.520 1_77 - 399 TIGR01968 TIGR01968 261 1.2e-06 20.7 0.0 1 2 0.00036 0.037 6.0 0.0 3 28 110 135 108 153 0.78 # 69034 # 70230 # 1 # ID=1_77;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.456 1_77 - 399 TIGR01968 TIGR01968 261 1.2e-06 20.7 0.0 2 2 5.7e-06 0.0006 11.8 0.0 102 135 235 268 225 280 0.88 # 69034 # 70230 # 1 # ID=1_77;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.456 1_63 - 333 Glycos_transf_1 PF00534.15 172 9.5e-08 24.6 0.0 1 1 1.5e-09 1.5e-07 23.9 0.0 85 159 231 304 226 318 0.83 # 54611 # 55609 # -1 # ID=1_63;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.486 1_11 - 226 EFP PF01132.15 55 0.0005 12.8 0.0 1 1 1e-05 0.0011 11.7 0.0 23 53 133 163 133 164 0.90 # 8740 # 9417 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.460 1_31 - 398 HTH_28 PF13518.1 52 1.2e-08 27.8 0.1 1 2 1.3e-08 1.3e-06 21.3 0.0 2 39 7 45 6 57 0.87 # 34730 # 35923 # -1 # ID=1_31;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.513 1_31 - 398 HTH_28 PF13518.1 52 1.2e-08 27.8 0.1 2 2 0.0083 0.87 2.7 0.0 27 45 232 250 229 254 0.87 # 34730 # 35923 # -1 # ID=1_31;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.513 1_64 - 455 DnaB_C PF03796.10 259 1.4e-109 357.8 0.3 1 1 2e-111 2.1e-109 357.3 0.3 1 257 188 445 188 447 0.98 # 55609 # 56973 # -1 # ID=1_64;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.483 1_6 - 640 MerR-DNA-bind PF09278.6 65 0.0086 9.5 6.3 1 2 0.0093 0.97 2.9 0.0 16 57 45 86 45 93 0.88 # 2334 # 4253 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.518 1_6 - 640 MerR-DNA-bind PF09278.6 65 0.0086 9.5 6.3 2 2 0.0004 0.042 7.3 1.1 18 56 219 260 217 267 0.80 # 2334 # 4253 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.518 1_78 - 334 HTH_24 PF13412.1 48 1.5e-07 23.8 0.5 1 2 4.3e-08 2.2e-06 20.0 0.0 14 39 162 187 158 190 0.93 # 70247 # 71248 # 1 # ID=1_78;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.443 1_78 - 334 HTH_24 PF13412.1 48 1.5e-07 23.8 0.5 2 2 0.035 1.8 1.1 0.1 2 17 250 265 249 268 0.83 # 70247 # 71248 # 1 # ID=1_78;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.443 1_31 - 398 HTH_24 PF13412.1 48 3.1e-05 16.3 0.0 1 1 1.6e-06 8.6e-05 14.9 0.0 12 44 13 45 11 45 0.94 # 34730 # 35923 # -1 # ID=1_31;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.513 1_6 - 640 Kinesin-relat_1 PF12711.2 86 0.0018 11.7 5.3 1 2 0.004 0.42 4.1 0.5 8 42 196 230 191 236 0.81 # 2334 # 4253 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.518 1_6 - 640 Kinesin-relat_1 PF12711.2 86 0.0018 11.7 5.3 2 2 0.00015 0.016 8.6 0.4 7 37 251 281 246 284 0.91 # 2334 # 4253 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.518 1_54 - 52 TIGR01059 TIGR01059 639 0.00088 10.4 0.2 1 1 8.7e-06 0.00092 10.4 0.2 347 388 3 44 1 49 0.89 # 48618 # 48773 # -1 # ID=1_54;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.506 1_8 - 996 DUF2250 PF10007.4 93 0.00078 12.4 0.0 1 1 9.7e-05 0.01 8.8 0.0 7 76 279 348 274 350 0.94 # 4628 # 7615 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.494 1_20 - 971 DEAD PF00270.24 169 3.1e-06 19.8 0.0 1 1 2.2e-07 2.3e-05 16.9 0.0 14 106 76 205 58 263 0.60 # 23500 # 26412 # 1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.348 1_77 - 399 Methyltransf_24 PF13578.1 106 7.6e-05 16.5 0.0 1 2 0.0042 0.44 4.4 0.0 4 83 119 157 90 165 0.69 # 69034 # 70230 # 1 # ID=1_77;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.456 1_77 - 399 Methyltransf_24 PF13578.1 106 7.6e-05 16.5 0.0 2 2 2.7e-05 0.0028 11.5 0.0 4 83 119 258 116 272 0.53 # 69034 # 70230 # 1 # ID=1_77;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.456 1_87 - 270 THF_DHG_CYH PF00763.18 117 0.00033 13.7 0.0 1 1 8.3e-06 0.00087 12.3 0.0 41 91 213 263 181 266 0.90 # 78677 # 79486 # -1 # ID=1_87;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.452 1_44 - 242 AAA_17 PF13207.1 121 0.011 9.6 4.0 1 2 0.04 4.2 1.2 1.6 53 78 59 89 5 160 0.51 # 41960 # 42685 # -1 # ID=1_44;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.507 1_44 - 242 AAA_17 PF13207.1 121 0.011 9.6 4.0 2 2 0.00022 0.023 8.5 0.0 2 20 168 189 167 212 0.80 # 41960 # 42685 # -1 # ID=1_44;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.507 1_47 - 193 ASCH PF04266.9 105 0.00013 15.4 0.0 1 1 1.2e-05 0.0012 12.2 0.0 3 75 12 147 10 187 0.78 # 43201 # 43779 # -1 # ID=1_47;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.516 1_64 - 455 AAA_25 PF13481.1 194 8.4e-15 47.6 0.1 1 1 1.5e-16 1.6e-14 46.7 0.1 14 190 188 368 174 372 0.82 # 55609 # 56973 # -1 # ID=1_64;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.483 1_64 - 455 AAA_33 PF13671.1 143 0.0002 14.2 0.2 1 3 0.088 9.3 -0.9 0.0 46 79 134 172 102 181 0.69 # 55609 # 56973 # -1 # ID=1_64;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.483 1_64 - 455 AAA_33 PF13671.1 143 0.0002 14.2 0.2 2 3 3.9e-05 0.0041 10.0 0.0 2 42 209 248 208 327 0.60 # 55609 # 56973 # -1 # ID=1_64;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.483 1_64 - 455 AAA_33 PF13671.1 143 0.0002 14.2 0.2 3 3 0.036 3.8 0.4 0.1 88 123 350 383 331 394 0.72 # 55609 # 56973 # -1 # ID=1_64;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.483 1_44 - 242 APS_kinase PF01583.15 157 0.00011 14.8 0.0 1 1 3.2e-06 0.00034 13.3 0.0 4 43 167 206 164 226 0.91 # 41960 # 42685 # -1 # ID=1_44;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.507 1_69 - 1096 DNA_methylase PF00145.12 335 5.9e-32 104.0 0.0 1 4 1.4e-10 1.5e-08 27.0 0.0 5 71 8 78 6 81 0.94 # 59802 # 63089 # -1 # ID=1_69;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.472 1_69 - 1096 DNA_methylase PF00145.12 335 5.9e-32 104.0 0.0 2 4 4.3e-10 4.5e-08 25.5 0.0 71 117 419 474 415 485 0.90 # 59802 # 63089 # -1 # ID=1_69;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.472 1_69 - 1096 DNA_methylase PF00145.12 335 5.9e-32 104.0 0.0 3 4 6.1e-15 6.4e-13 41.4 0.0 136 308 533 747 528 757 0.54 # 59802 # 63089 # -1 # ID=1_69;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.472 1_69 - 1096 DNA_methylase PF00145.12 335 5.9e-32 104.0 0.0 4 4 0.0015 0.16 4.0 0.0 312 334 782 804 771 805 0.88 # 59802 # 63089 # -1 # ID=1_69;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.472 1_96 - 1141 UBA_4 PF14555.1 43 0.00017 14.1 0.1 1 1 1.1e-05 0.0012 11.4 0.0 20 36 830 846 829 851 0.93 # 85693 # 89115 # 1 # ID=1_96;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.482 1_12 - 163 tRNA_anti-codon PF01336.20 75 0.00066 12.6 0.0 1 1 9.8e-06 0.001 11.9 0.0 31 61 58 92 52 112 0.82 # 9615 # 10103 # -1 # ID=1_12;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.497 1_87 - 270 MarR_2 PF12802.2 62 0.00035 13.2 0.2 1 1 2.5e-05 0.0013 11.4 0.1 27 61 50 84 45 89 0.83 # 78677 # 79486 # -1 # ID=1_87;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.452 1_78 - 334 MarR_2 PF12802.2 62 0.0005 12.7 0.0 1 1 2.3e-05 0.0012 11.5 0.0 17 47 163 191 156 202 0.86 # 70247 # 71248 # 1 # ID=1_78;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.443 1_87 - 270 HTH_Crp_2 PF13545.1 76 0.00081 12.2 0.0 1 1 1.6e-05 0.0017 11.2 0.0 21 60 37 76 21 88 0.81 # 78677 # 79486 # -1 # ID=1_87;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.452 1_6 - 640 AAA_13 PF13166.1 712 0.016 6.6 12.5 1 2 1.3e-05 0.0013 10.1 7.4 377 466 198 282 152 283 0.75 # 2334 # 4253 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.518 1_6 - 640 AAA_13 PF13166.1 712 0.016 6.6 12.5 2 2 0.059 6.2 -2.0 0.2 369 398 564 593 529 634 0.48 # 2334 # 4253 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.518 1_77 - 399 ArsA_ATPase PF02374.10 305 0.00048 12.2 0.0 1 1 1.2e-05 0.0013 10.8 0.0 4 51 111 165 108 255 0.76 # 69034 # 70230 # 1 # ID=1_77;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.456 1_77 - 399 AAA_31 PF13614.1 157 6.9e-07 22.3 0.0 1 2 0.0011 0.06 6.3 0.0 2 61 110 174 109 221 0.79 # 69034 # 70230 # 1 # ID=1_77;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.456 1_77 - 399 AAA_31 PF13614.1 157 6.9e-07 22.3 0.0 2 2 6e-06 0.00031 13.7 0.0 108 138 235 265 231 277 0.85 # 69034 # 70230 # 1 # ID=1_77;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.456 1_64 - 455 AAA_31 PF13614.1 157 6.5e-05 15.9 0.0 1 1 2.9e-06 0.00015 14.7 0.0 5 43 210 249 208 260 0.89 # 55609 # 56973 # -1 # ID=1_64;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.483 1_12 - 163 SSB PF00436.20 104 5.4e-43 138.1 0.3 1 1 6.6e-45 6.9e-43 137.8 0.3 1 100 6 109 6 113 0.96 # 9615 # 10103 # -1 # ID=1_12;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.497 # # Program: hmmsearch # Version: 3.1b1 (May 2013) # Pipeline mode: SEARCH # Query file: /tmp/9f5b6f34-bc82-4951-a807-b3b82ee837db # Target file: checkm_output/bins/pm467/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm467/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/9f5b6f34-bc82-4951-a807-b3b82ee837db checkm_output/bins/pm467/genes.faa # Current dir: /mnt/data/azomer/reads-for-assembly/files/output/allcontigs/output_1512029421078392887 # Date: Thu Nov 30 10:06:44 2017 # [ok]