# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_7 - 137 HTH_IclR PF09339.5 52 3.2e-06 16.1 0.4 1 1 7.1e-07 5.7e-06 15.3 0.4 19 40 4 25 1 26 0.90 # 4214 # 4624 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.484 1_5 - 48 AAA_23 PF13476.1 202 1.6e-12 37.5 1.1 1 1 2e-13 1.6e-12 37.5 1.1 2 40 5 43 4 47 0.93 # 3008 # 3151 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.278 1_5 - 48 SMC_N PF02463.14 220 1.5e-11 33.2 0.6 1 1 4e-12 1.6e-11 33.2 0.6 1 48 1 45 1 47 0.93 # 3008 # 3151 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.278 1_3 - 115 SMC_N PF02463.14 220 1.6e-05 13.5 0.1 1 1 5e-06 2e-05 13.2 0.1 146 207 9 71 3 79 0.79 # 2040 # 2384 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.342 1_3 - 115 AAA_21 PF13304.1 303 2.8e-19 59.4 4.5 1 2 1.6e-19 6.5e-19 58.2 1.0 237 301 2 65 1 67 0.88 # 2040 # 2384 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.342 1_3 - 115 AAA_21 PF13304.1 303 2.8e-19 59.4 4.5 2 2 0.0095 0.038 3.2 0.1 105 147 69 111 66 114 0.86 # 2040 # 2384 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.342 1_5 - 48 AAA_21 PF13304.1 303 1.1e-06 18.1 0.8 1 1 3.5e-07 1.4e-06 17.7 0.8 1 22 24 45 24 46 0.93 # 3008 # 3151 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.278 1_7 - 137 MerR_1 PF13411.1 69 4.2e-05 12.7 0.1 1 1 1.7e-05 0.00014 11.1 0.0 2 30 5 33 4 42 0.86 # 4214 # 4624 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.484 1_5 - 48 AAA_29 PF13555.1 62 2.9e-07 19.4 0.0 1 1 3.7e-08 2.9e-07 19.4 0.0 5 47 6 46 2 47 0.69 # 3008 # 3151 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.278 1_7 - 137 HTH_23 PF13384.1 50 9.6e-06 14.7 0.1 1 1 2.7e-06 2.1e-05 13.5 0.1 18 40 4 26 1 26 0.91 # 4214 # 4624 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.484 1_7 - 137 HTH_29 PF13551.1 112 4.2e-05 13.1 0.2 1 2 7e-05 0.00056 9.5 0.0 12 35 4 26 1 31 0.90 # 4214 # 4624 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.484 1_7 - 137 HTH_29 PF13551.1 112 4.2e-05 13.1 0.2 2 2 0.017 0.14 1.8 0.0 51 74 66 88 56 110 0.78 # 4214 # 4624 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.484 1_5 - 48 TIGR00611 TIGR00611 365 8.2e-12 33.8 0.1 1 1 1e-12 8.3e-12 33.8 0.1 3 46 2 45 1 47 0.95 # 3008 # 3151 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.278 1_3 - 115 NAD_synthase PF02540.12 242 4e-05 11.9 0.6 1 1 6.5e-06 5.2e-05 11.5 0.6 186 236 26 77 19 79 0.88 # 2040 # 2384 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.342 1_7 - 137 HTH_28 PF13518.1 52 3.1e-05 13.4 0.1 1 1 1.2e-05 9.4e-05 11.8 0.1 13 35 4 26 2 28 0.92 # 4214 # 4624 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.484 1_7 - 137 HTH_24 PF13412.1 48 5.5e-05 12.0 0.3 1 1 1.3e-05 0.00011 11.1 0.3 16 39 2 25 2 26 0.94 # 4214 # 4624 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.484 1_3 - 115 AAA_15 PF13175.1 415 1.5e-13 39.8 1.4 1 1 3.8e-14 1.5e-13 39.8 1.4 359 411 13 62 3 66 0.83 # 2040 # 2384 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.342 1_5 - 48 AAA_15 PF13175.1 415 1.4e-12 36.6 3.0 1 1 3.6e-13 1.4e-12 36.6 3.0 1 43 2 43 2 47 0.92 # 3008 # 3151 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.278 1_7 - 137 MerR PF00376.18 38 1.9e-05 13.6 0.0 1 1 5.1e-06 4.1e-05 12.5 0.0 1 23 5 27 5 34 0.92 # 4214 # 4624 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.484 1_8 - 147 DDE_Tnp_IS1 PF03400.8 131 2.1e-81 259.8 1.0 1 1 3e-82 2.4e-81 259.6 1.0 1 131 16 146 16 146 0.99 # 4618 # 5058 # -1 # ID=1_8;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.556 1_5 - 48 TIGR00634 TIGR00634 563 2.5e-06 15.6 0.1 1 1 3.5e-07 2.8e-06 15.4 0.1 1 43 1 43 1 46 0.96 # 3008 # 3151 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.278 1_7 - 137 HTH_17 PF12728.2 51 7.7e-09 25.2 0.0 1 1 1.6e-09 1.3e-08 24.4 0.0 3 44 5 47 4 50 0.79 # 4214 # 4624 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.484 1_5 - 48 DUF2813 PF11398.3 373 1.6e-07 20.0 0.0 1 1 2e-08 1.6e-07 20.0 0.0 3 46 2 46 1 47 0.90 # 3008 # 3151 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.278 1_4 - 138 ROK PF00480.15 179 2e-05 13.8 0.6 1 1 3.3e-06 2.6e-05 13.4 0.6 7 89 32 113 28 125 0.78 # 2580 # 2993 # -1 # ID=1_4;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.343 # # Program: hmmsearch # Version: 3.1b1 (May 2013) # Pipeline mode: SEARCH # Query file: /tmp/51493fbe-79fc-4022-b934-9f6729f24f78 # Target file: checkm_output/bins/pm452/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm452/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/51493fbe-79fc-4022-b934-9f6729f24f78 checkm_output/bins/pm452/genes.faa # Current dir: /mnt/data/azomer/reads-for-assembly/files/output/allcontigs/output_1512029421078392887 # Date: Thu Nov 30 10:06:11 2017 # [ok]