# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_41 - 313 KaiC PF06745.8 227 0.00035 12.0 0.0 1 1 8.7e-06 0.00058 11.3 0.0 22 68 120 164 115 186 0.85 # 25991 # 26929 # -1 # ID=1_41;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.482 1_52 - 340 ABC_tran PF00005.22 137 4e-06 19.5 0.0 1 2 0.051 3.4 0.3 0.0 36 116 32 148 25 154 0.54 # 36872 # 37891 # -1 # ID=1_52;partial=00;start_type=TTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.413 1_52 - 340 ABC_tran PF00005.22 137 4e-06 19.5 0.0 2 2 4e-07 2.6e-05 16.9 0.0 14 62 174 220 167 306 0.78 # 36872 # 37891 # -1 # ID=1_52;partial=00;start_type=TTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.413 1_52 - 340 Sigma54_activat PF00158.21 168 2.6e-05 16.0 0.0 1 1 1.4e-06 9.1e-05 14.3 0.0 13 44 162 193 152 279 0.87 # 36872 # 37891 # -1 # ID=1_52;partial=00;start_type=TTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.413 1_52 - 340 FtsK_SpoIIIE PF01580.13 205 4.8e-05 15.2 0.0 1 1 2.6e-06 8.6e-05 14.4 0.0 35 57 168 190 140 193 0.77 # 36872 # 37891 # -1 # ID=1_52;partial=00;start_type=TTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.413 1_58 - 791 FtsK_SpoIIIE PF01580.13 205 0.00023 13.0 0.1 1 1 1.2e-05 0.00041 12.2 0.1 36 54 421 439 408 442 0.83 # 42139 # 44511 # -1 # ID=1_58;partial=00;start_type=GTG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.413 1_65 - 164 HTH_40 PF14493.1 91 5.8e-05 15.6 0.3 1 1 2.8e-06 0.00018 14.1 0.1 7 38 27 58 21 92 0.86 # 47288 # 47779 # -1 # ID=1_65;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.413 1_65 - 164 HTH_38 PF13936.1 44 2e-05 16.5 0.0 1 1 7e-07 4.6e-05 15.3 0.0 4 41 18 54 16 56 0.86 # 47288 # 47779 # -1 # ID=1_65;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.413 1_52 - 340 MobB PF03205.9 140 9.9e-05 14.4 0.0 1 2 2e-05 0.0013 10.8 0.0 4 24 175 195 173 211 0.79 # 36872 # 37891 # -1 # ID=1_52;partial=00;start_type=TTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.413 1_52 - 340 MobB PF03205.9 140 9.9e-05 14.4 0.0 2 2 0.02 1.3 1.0 0.0 74 104 291 323 270 334 0.77 # 36872 # 37891 # -1 # ID=1_52;partial=00;start_type=TTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.413 1_22 - 75 HTH_Tnp_4 PF13613.1 53 0.00036 12.4 0.0 1 1 7.9e-06 0.00052 11.9 0.0 15 37 12 34 11 35 0.88 # 15368 # 15592 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.400 1_28 - 93 HTH_8 PF02954.14 42 0.00035 12.5 0.1 1 1 1.1e-05 0.00075 11.4 0.1 15 39 42 65 40 66 0.89 # 17000 # 17278 # 1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.398 1_52 - 340 AAA_19 PF13245.1 76 1e-06 20.8 0.0 1 1 1.2e-07 2.6e-06 19.5 0.0 6 35 167 195 163 215 0.82 # 36872 # 37891 # -1 # ID=1_52;partial=00;start_type=TTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.413 1_41 - 313 AAA_19 PF13245.1 76 0.00019 13.5 0.2 1 1 2.3e-05 0.00052 12.1 0.2 7 37 115 144 109 225 0.83 # 25991 # 26929 # -1 # ID=1_41;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.482 1_45 - 506 AAA_19 PF13245.1 76 0.00026 13.1 0.0 1 1 3.7e-05 0.0008 11.5 0.0 10 47 240 275 232 278 0.78 # 28831 # 30348 # -1 # ID=1_45;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.507 1_14 - 223 CbiA PF01656.18 195 1.7e-17 55.8 1.0 1 1 1.2e-18 4.1e-17 54.5 1.0 2 168 6 164 5 184 0.74 # 10160 # 10828 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.456 1_9 - 233 CbiA PF01656.18 195 1.7e-05 16.6 2.6 1 1 3.5e-05 0.0011 10.6 2.6 2 174 6 148 5 170 0.71 # 4895 # 5593 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.385 1_65 - 164 Sigma70_r4_2 PF08281.7 54 9.6e-08 23.8 0.2 1 2 2.2e-08 1.4e-06 20.0 0.0 2 54 10 61 9 61 0.92 # 47288 # 47779 # -1 # ID=1_65;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.413 1_65 - 164 Sigma70_r4_2 PF08281.7 54 9.6e-08 23.8 0.2 2 2 0.011 0.75 1.7 0.1 11 33 96 117 91 131 0.83 # 47288 # 47779 # -1 # ID=1_65;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.413 1_66 - 255 Rep_3 PF01051.16 222 7.9e-24 76.8 1.9 1 1 1.4e-25 9.5e-24 76.5 1.9 29 222 2 226 1 226 0.87 # 47879 # 48643 # -1 # ID=1_66;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.395 1_45 - 506 AAA_23 PF13476.1 202 8.8e-05 15.2 0.1 1 1 1.4e-05 0.00031 13.4 0.0 17 38 220 259 211 264 0.72 # 28831 # 30348 # -1 # ID=1_45;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.507 1_41 - 313 AAA_23 PF13476.1 202 0.00016 14.4 0.0 1 1 1e-05 0.00023 13.8 0.0 18 40 116 138 94 235 0.84 # 25991 # 26929 # -1 # ID=1_41;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.482 1_52 - 340 AAA_23 PF13476.1 202 0.00018 14.2 7.0 1 2 0.087 1.9 1.0 0.3 101 127 127 153 46 173 0.57 # 36872 # 37891 # -1 # ID=1_52;partial=00;start_type=TTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.413 1_52 - 340 AAA_23 PF13476.1 202 0.00018 14.2 7.0 2 2 0.00013 0.0028 10.3 7.7 22 39 174 191 129 195 0.89 # 36872 # 37891 # -1 # ID=1_52;partial=00;start_type=TTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.413 1_31 - 754 zf-TFIIB PF13453.1 41 0.00023 12.7 1.6 1 2 0.00014 0.009 7.6 0.1 2 23 636 657 635 658 0.93 # 18252 # 20513 # -1 # ID=1_31;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.432 1_31 - 754 zf-TFIIB PF13453.1 41 0.00023 12.7 1.6 2 2 0.0021 0.14 3.8 0.1 2 13 699 710 698 726 0.75 # 18252 # 20513 # -1 # ID=1_31;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.432 1_52 - 340 Zeta_toxin PF06414.7 201 4.9e-05 14.8 0.0 1 1 3.1e-06 0.0001 13.7 0.0 12 48 167 204 156 239 0.82 # 36872 # 37891 # -1 # ID=1_52;partial=00;start_type=TTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.413 1_41 - 313 Zeta_toxin PF06414.7 201 0.00032 12.1 0.1 1 1 3e-05 0.00098 10.5 0.1 14 39 115 140 104 153 0.82 # 25991 # 26929 # -1 # ID=1_41;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.482 1_65 - 164 GerE PF00196.14 58 3.1e-13 41.3 0.9 1 2 3.6e-12 2.4e-10 32.0 0.1 2 54 17 69 16 73 0.94 # 47288 # 47779 # -1 # ID=1_65;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.413 1_65 - 164 GerE PF00196.14 58 3.1e-13 41.3 0.9 2 2 0.00011 0.007 8.1 0.0 2 27 94 119 93 138 0.89 # 47288 # 47779 # -1 # ID=1_65;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.413 1_51 - 599 TraG-D_C PF12696.2 128 5.3e-25 80.1 0.0 1 1 1.4e-26 9.1e-25 79.3 0.0 1 126 417 541 417 543 0.80 # 35050 # 36846 # -1 # ID=1_51;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.415 1_14 - 223 MipZ PF09140.6 261 9e-13 40.1 2.5 1 2 4.9e-07 3.2e-05 15.4 0.7 3 38 5 41 3 56 0.82 # 10160 # 10828 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.456 1_14 - 223 MipZ PF09140.6 261 9e-13 40.1 2.5 2 2 1e-09 6.8e-08 24.1 0.0 86 128 69 111 63 115 0.89 # 10160 # 10828 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.456 1_31 - 754 zinc-ribbons_6 PF07191.7 70 2.7e-05 16.3 4.1 1 2 0.00064 0.042 6.1 0.1 31 44 634 647 628 658 0.78 # 18252 # 20513 # -1 # ID=1_31;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.432 1_31 - 754 zinc-ribbons_6 PF07191.7 70 2.7e-05 16.3 4.1 2 2 2.7e-05 0.0018 10.5 1.1 20 67 686 733 660 736 0.73 # 18252 # 20513 # -1 # ID=1_31;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.432 1_52 - 340 AAA PF00004.24 132 6.9e-05 15.4 0.0 1 1 2.2e-06 0.00015 14.3 0.0 2 22 175 195 174 250 0.82 # 36872 # 37891 # -1 # ID=1_52;partial=00;start_type=TTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.413 1_22 - 75 HTH_37 PF13744.1 80 0.00014 14.0 0.0 1 1 2.9e-06 0.00019 13.6 0.0 22 47 7 32 5 41 0.86 # 15368 # 15592 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.400 1_31 - 754 zf-C4_Topoisom PF01396.14 39 3.1e-07 22.2 1.7 1 2 4.7e-09 3.1e-07 22.2 1.7 3 35 635 670 633 673 0.93 # 18252 # 20513 # -1 # ID=1_31;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.432 1_31 - 754 zf-C4_Topoisom PF01396.14 39 3.1e-07 22.2 1.7 2 2 0.00016 0.011 7.7 0.5 3 24 698 722 696 724 0.77 # 18252 # 20513 # -1 # ID=1_31;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.432 1_52 - 340 TIGR00382 TIGR00382 414 0.00032 11.7 0.0 1 1 7.1e-06 0.00047 11.2 0.0 116 140 170 194 129 197 0.82 # 36872 # 37891 # -1 # ID=1_52;partial=00;start_type=TTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.413 1_52 - 340 AAA_16 PF13191.1 185 0.00011 14.5 0.0 1 1 2.9e-06 0.00019 13.8 0.0 24 51 171 198 138 222 0.84 # 36872 # 37891 # -1 # ID=1_52;partial=00;start_type=TTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.413 1_45 - 506 AAA_22 PF13401.1 131 5.5e-05 15.7 0.0 1 1 3.8e-06 0.00012 14.5 0.0 3 31 239 267 234 306 0.82 # 28831 # 30348 # -1 # ID=1_45;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.507 1_52 - 340 AAA_22 PF13401.1 131 0.00015 14.2 0.0 1 1 9.8e-06 0.00032 13.2 0.0 5 31 172 198 143 240 0.81 # 36872 # 37891 # -1 # ID=1_52;partial=00;start_type=TTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.413 1_52 - 340 AAA_29 PF13555.1 62 1.2e-06 20.4 0.0 1 1 8.6e-08 2.9e-06 19.1 0.0 24 51 172 199 160 204 0.84 # 36872 # 37891 # -1 # ID=1_52;partial=00;start_type=TTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.413 1_45 - 506 AAA_29 PF13555.1 62 5.5e-05 15.0 0.1 1 1 4.2e-06 0.00014 13.7 0.1 20 39 238 256 230 264 0.85 # 28831 # 30348 # -1 # ID=1_45;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.507 1_14 - 223 SRP54 PF00448.17 196 0.00014 13.7 0.8 1 1 7.4e-06 0.00049 11.9 0.8 5 94 5 92 2 116 0.67 # 10160 # 10828 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.456 1_52 - 340 AAA_28 PF13521.1 163 2.8e-05 16.4 0.0 1 1 7.6e-07 5e-05 15.6 0.0 2 32 174 209 173 236 0.84 # 36872 # 37891 # -1 # ID=1_52;partial=00;start_type=TTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.413 1_28 - 93 HTH_3 PF01381.17 55 1.6e-09 29.9 0.0 1 1 1e-10 3.5e-09 28.8 0.0 7 52 44 87 40 89 0.93 # 17000 # 17278 # 1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.398 1_22 - 75 HTH_3 PF01381.17 55 0.0002 13.6 0.0 1 1 9.4e-06 0.00031 12.9 0.0 1 23 8 30 8 32 0.92 # 15368 # 15592 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.400 1_14 - 223 Fer4_NifH PF00142.13 273 0.00012 13.6 0.1 1 1 3.4e-06 0.00022 12.7 0.1 8 36 11 40 5 46 0.84 # 10160 # 10828 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.456 1_28 - 93 HTH_19 PF12844.2 64 1.1e-05 17.8 0.1 1 1 5e-07 3.3e-05 16.3 0.1 14 54 46 86 1 88 0.96 # 17000 # 17278 # 1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.398 1_52 - 340 NB-ARC PF00931.17 287 0.00018 12.7 0.0 1 2 1.1e-05 0.00073 10.7 0.0 18 40 170 192 123 204 0.87 # 36872 # 37891 # -1 # ID=1_52;partial=00;start_type=TTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.413 1_52 - 340 NB-ARC PF00931.17 287 0.00018 12.7 0.0 2 2 0.038 2.5 -0.9 0.0 154 201 247 302 229 319 0.68 # 36872 # 37891 # -1 # ID=1_52;partial=00;start_type=TTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.413 1_52 - 340 Mg_chelatase PF01078.16 207 9.4e-06 17.2 0.0 1 1 2.3e-07 1.5e-05 16.5 0.0 23 56 172 205 158 225 0.87 # 36872 # 37891 # -1 # ID=1_52;partial=00;start_type=TTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.413 1_52 - 340 G-alpha PF00503.15 389 7.1e-06 17.2 0.0 1 2 5.6e-07 3.7e-05 14.8 0.0 53 120 166 244 131 300 0.73 # 36872 # 37891 # -1 # ID=1_52;partial=00;start_type=TTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.413 1_52 - 340 G-alpha PF00503.15 389 7.1e-06 17.2 0.0 2 2 0.023 1.5 -0.4 0.1 301 313 308 320 299 325 0.82 # 36872 # 37891 # -1 # ID=1_52;partial=00;start_type=TTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.413 1_52 - 340 AAA_5 PF07728.9 139 0.00043 12.4 0.0 1 1 1.1e-05 0.0007 11.7 0.0 1 29 173 203 173 251 0.87 # 36872 # 37891 # -1 # ID=1_52;partial=00;start_type=TTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.413 1_52 - 340 ResIII PF04851.10 184 0.00017 13.8 0.0 1 1 4.3e-06 0.00028 13.0 0.0 11 44 159 190 131 201 0.75 # 36872 # 37891 # -1 # ID=1_52;partial=00;start_type=TTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.413 1_10 - 166 Myb_DNA-bind_5 PF13873.1 78 2e-07 23.2 0.2 1 1 4.7e-09 3.1e-07 22.6 0.2 19 77 21 79 13 80 0.94 # 5603 # 6100 # -1 # ID=1_10;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.376 1_51 - 599 TrwB_AAD_bind PF10412.4 386 5.6e-22 70.1 0.0 1 1 3.7e-23 1.2e-21 69.0 0.0 73 368 220 544 217 551 0.78 # 35050 # 36846 # -1 # ID=1_51;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.415 1_52 - 340 TrwB_AAD_bind PF10412.4 386 3.2e-05 14.9 0.0 1 1 2.1e-06 7.1e-05 13.8 0.0 6 36 162 192 157 207 0.81 # 36872 # 37891 # -1 # ID=1_52;partial=00;start_type=TTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.413 1_14 - 223 TIGR01968 TIGR01968 261 2.1e-12 38.9 0.8 1 2 3e-09 2e-07 22.6 0.4 2 39 3 41 2 58 0.83 # 10160 # 10828 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.456 1_14 - 223 TIGR01968 TIGR01968 261 2.1e-12 38.9 0.8 2 2 6.8e-07 4.5e-05 14.9 0.0 100 180 70 158 64 196 0.83 # 10160 # 10828 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.456 1_52 - 340 AAA_18 PF13238.1 129 1.1e-05 18.1 0.0 1 1 3.5e-07 2.3e-05 17.0 0.0 2 39 175 216 175 250 0.74 # 36872 # 37891 # -1 # ID=1_52;partial=00;start_type=TTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.413 1_19 - 175 B5 PF03484.10 70 0.00038 12.6 0.0 1 2 0.00018 0.012 7.8 0.0 8 40 3 36 1 51 0.78 # 13938 # 14462 # 1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.495 1_19 - 175 B5 PF03484.10 70 0.00038 12.6 0.0 2 2 0.0068 0.45 2.8 0.0 18 45 107 133 80 158 0.74 # 13938 # 14462 # 1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.495 1_8 - 196 DUF3810 PF12725.2 318 0.0004 11.6 1.1 1 2 0.0023 0.15 3.1 0.2 107 162 57 114 29 126 0.73 # 4262 # 4849 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.372 1_8 - 196 DUF3810 PF12725.2 318 0.0004 11.6 1.1 2 2 1.9e-05 0.0013 10.0 0.1 46 117 109 181 92 194 0.77 # 4262 # 4849 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.372 1_52 - 340 Sigma54_activ_2 PF14532.1 138 0.00042 12.7 0.0 1 1 1.3e-05 0.00089 11.7 0.0 10 42 160 192 156 213 0.85 # 36872 # 37891 # -1 # ID=1_52;partial=00;start_type=TTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.413 1_9 - 233 MMR_HSR1 PF01926.18 116 4.8e-06 18.9 0.0 1 1 1.4e-07 9e-06 18.0 0.0 9 88 13 101 11 168 0.61 # 4895 # 5593 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.385 1_52 - 340 Miro PF08477.8 119 0.00041 13.2 0.0 1 1 1.9e-05 0.0013 11.6 0.0 2 92 174 285 173 293 0.62 # 36872 # 37891 # -1 # ID=1_52;partial=00;start_type=TTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.413 1_22 - 75 HTH_31 PF13560.1 64 1.2e-07 24.2 0.0 1 1 4.5e-09 1.5e-07 23.9 0.0 5 42 7 45 6 58 0.86 # 15368 # 15592 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.400 1_5 - 71 HTH_31 PF13560.1 64 0.00021 13.9 0.0 1 1 7.6e-06 0.00025 13.6 0.0 5 34 9 38 7 47 0.89 # 2029 # 2241 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.423 1_52 - 340 T2SE PF00437.15 272 2e-65 212.7 0.0 1 1 1.1e-66 2.3e-65 212.4 0.0 4 266 17 315 14 321 0.96 # 36872 # 37891 # -1 # ID=1_52;partial=00;start_type=TTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.413 1_45 - 506 T2SE PF00437.15 272 2.2e-40 130.5 0.0 1 1 1.8e-41 3.9e-40 129.7 0.0 11 252 113 360 104 377 0.89 # 28831 # 30348 # -1 # ID=1_45;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.507 1_41 - 313 T2SE PF00437.15 272 8.5e-22 69.6 0.4 1 1 5.2e-23 1.2e-21 69.1 0.4 117 259 107 254 71 266 0.83 # 25991 # 26929 # -1 # ID=1_41;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.482 1_52 - 340 AAA_17 PF13207.1 121 2.4e-06 20.7 0.0 1 1 1.4e-07 4.7e-06 19.8 0.0 3 22 175 194 173 262 0.86 # 36872 # 37891 # -1 # ID=1_52;partial=00;start_type=TTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.413 1_14 - 223 AAA_17 PF13207.1 121 0.00014 15.0 0.0 1 2 5.5e-05 0.0018 11.4 0.0 9 104 13 116 11 135 0.58 # 10160 # 10828 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.456 1_14 - 223 AAA_17 PF13207.1 121 0.00014 15.0 0.0 2 2 0.068 2.2 1.5 0.0 42 107 162 211 144 218 0.69 # 10160 # 10828 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.456 1_41 - 313 AAA_25 PF13481.1 194 0.00032 12.4 0.0 1 1 7e-06 0.00046 11.9 0.0 33 67 117 156 92 245 0.64 # 25991 # 26929 # -1 # ID=1_41;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.482 1_14 - 223 VirC1 PF07015.6 231 4.5e-07 21.4 0.0 1 1 1.4e-08 9.4e-07 20.4 0.0 5 51 6 53 3 59 0.87 # 10160 # 10828 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.456 1_8 - 196 GrpE PF01025.14 166 0.0014 10.5 8.2 1 2 4.5e-06 0.0003 12.7 4.3 26 108 12 103 2 120 0.83 # 4262 # 4849 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.372 1_8 - 196 GrpE PF01025.14 166 0.0014 10.5 8.2 2 2 0.077 5.1 -1.1 0.1 29 60 155 186 141 192 0.57 # 4262 # 4849 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.372 1_51 - 599 T4SS-DNA_transf PF02534.9 469 7e-93 303.9 0.0 1 1 1.5e-94 1e-92 303.4 0.0 24 456 127 582 100 590 0.86 # 35050 # 36846 # -1 # ID=1_51;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.415 1_45 - 506 NTPase_1 PF03266.10 168 0.00026 13.0 0.0 1 2 0.0032 0.21 3.6 0.0 5 25 246 266 243 269 0.84 # 28831 # 30348 # -1 # ID=1_45;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.507 1_45 - 506 NTPase_1 PF03266.10 168 0.00026 13.0 0.0 2 2 0.00039 0.026 6.5 0.0 108 145 316 353 314 357 0.91 # 28831 # 30348 # -1 # ID=1_45;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.507 1_52 - 340 ATP_bind_1 PF03029.12 238 0.00021 13.2 0.0 1 1 7.6e-06 0.0005 11.9 0.0 1 24 176 199 176 205 0.85 # 36872 # 37891 # -1 # ID=1_52;partial=00;start_type=TTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.413 1_28 - 93 HTH_26 PF13443.1 63 0.00022 13.8 0.0 1 1 5.5e-06 0.00037 13.1 0.0 12 52 46 85 36 88 0.90 # 17000 # 17278 # 1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.398 1_31 - 754 Zn-ribbon_8 PF09723.5 42 3.9e-05 15.9 3.8 1 2 0.00047 0.031 6.7 0.2 25 40 632 646 628 647 0.84 # 18252 # 20513 # -1 # ID=1_31;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.432 1_31 - 754 Zn-ribbon_8 PF09723.5 42 3.9e-05 15.9 3.8 2 2 6.1e-05 0.0041 9.5 0.5 20 40 690 709 682 711 0.83 # 18252 # 20513 # -1 # ID=1_31;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.432 1_6 - 122 tRNA-synt_1d PF00750.14 354 0.0003 11.9 0.1 1 1 5.1e-06 0.00033 11.8 0.1 200 248 47 95 27 108 0.88 # 2681 # 3046 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.396 1_58 - 791 AAA_10 PF12846.2 304 7e-25 80.3 0.0 1 1 5.2e-26 1.1e-24 79.6 0.0 2 302 424 712 423 714 0.83 # 42139 # 44511 # -1 # ID=1_58;partial=00;start_type=GTG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.413 1_41 - 313 AAA_10 PF12846.2 304 0.00016 13.4 0.0 1 2 3.8e-05 0.00083 11.1 0.0 3 37 119 155 117 180 0.82 # 25991 # 26929 # -1 # ID=1_41;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.482 1_41 - 313 AAA_10 PF12846.2 304 0.00016 13.4 0.0 2 2 0.096 2.1 -0.1 0.0 193 236 207 248 193 262 0.71 # 25991 # 26929 # -1 # ID=1_41;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.482 1_52 - 340 AAA_10 PF12846.2 304 0.0006 11.6 0.0 1 1 4.5e-05 0.00099 10.9 0.0 3 22 173 192 171 208 0.88 # 36872 # 37891 # -1 # ID=1_52;partial=00;start_type=TTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.413 1_8 - 196 AAA_13 PF13166.1 712 0.00046 11.0 7.6 1 1 1.2e-05 0.00077 10.2 7.6 324 428 14 117 2 123 0.82 # 4262 # 4849 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.372 1_14 - 223 ArsA_ATPase PF02374.10 305 2.5e-07 22.3 0.0 1 1 1.2e-08 4e-07 21.6 0.0 7 59 9 62 3 93 0.80 # 10160 # 10828 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.456 1_45 - 506 ArsA_ATPase PF02374.10 305 0.00044 11.6 0.0 1 1 3.1e-05 0.001 10.4 0.0 5 71 244 311 241 359 0.78 # 28831 # 30348 # -1 # ID=1_45;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.507 1_14 - 223 AAA_31 PF13614.1 157 4.5e-07 22.2 0.0 1 2 5.5e-06 0.00018 13.8 0.0 2 35 4 38 3 46 0.82 # 10160 # 10828 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.456 1_14 - 223 AAA_31 PF13614.1 157 4.5e-07 22.2 0.0 2 2 0.0028 0.092 5.0 0.0 104 151 68 114 53 116 0.84 # 10160 # 10828 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.456 1_9 - 233 AAA_31 PF13614.1 157 0.0002 13.6 0.2 1 2 0.0092 0.3 3.3 0.0 3 21 5 23 5 25 0.91 # 4895 # 5593 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.385 1_9 - 233 AAA_31 PF13614.1 157 0.0002 13.6 0.2 2 2 0.00034 0.011 7.9 0.0 100 138 47 84 40 109 0.82 # 4895 # 5593 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.385 1_52 - 340 IstB_IS21 PF01695.12 178 4.4e-05 15.2 0.0 1 1 1.2e-06 8e-05 14.4 0.0 44 68 168 192 137 194 0.86 # 36872 # 37891 # -1 # ID=1_52;partial=00;start_type=TTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.413 1_14 - 223 GTP_EFTU PF00009.22 188 2.3e-06 19.5 0.1 1 1 5.6e-08 3.7e-06 18.8 0.1 15 111 15 121 11 220 0.73 # 10160 # 10828 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.456 1_31 - 754 Zn_ribbon_recom PF13408.1 58 0.00026 13.6 3.6 1 2 0.00023 0.015 7.9 0.2 8 42 636 668 634 675 0.84 # 18252 # 20513 # -1 # ID=1_31;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.432 1_31 - 754 Zn_ribbon_recom PF13408.1 58 0.00026 13.6 3.6 2 2 0.0013 0.084 5.6 0.5 7 31 698 724 694 734 0.78 # 18252 # 20513 # -1 # ID=1_31;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.432 # # Program: hmmsearch # Version: 3.1b1 (May 2013) # Pipeline mode: SEARCH # Query file: /tmp/7a81ef82-ebdf-4ec0-a3ca-ecb47929b55b # Target file: checkm_output/bins/pm45/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm45/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/7a81ef82-ebdf-4ec0-a3ca-ecb47929b55b checkm_output/bins/pm45/genes.faa # Current dir: /mnt/data/azomer/reads-for-assembly/files/output/allcontigs/output_1512029421078392887 # Date: Thu Nov 30 10:06:10 2017 # [ok]