# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_4 - 101 HTH_22 PF13309.1 64 1.6e-05 14.0 0.0 1 1 4.1e-06 3.3e-05 13.0 0.0 46 61 7 22 6 24 0.92 # 3006 # 3308 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.482 1_4 - 101 HTH_8 PF02954.14 42 1.2e-05 14.2 0.0 1 1 2.9e-06 2.3e-05 13.3 0.0 23 37 8 22 7 22 0.92 # 3006 # 3308 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.482 1_4 - 101 HTH_Tnp_1 PF01527.15 76 2e-05 14.0 0.0 1 1 4.4e-06 3.6e-05 13.1 0.0 28 44 8 24 5 62 0.78 # 3006 # 3308 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.482 1_4 - 101 Phage_CI_repr PF07022.8 66 7e-06 15.5 0.0 1 1 1.1e-06 9.1e-06 15.1 0.0 16 34 7 24 2 60 0.91 # 3006 # 3308 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.482 1_4 - 101 P22_Cro PF14549.1 60 5.6e-05 12.3 0.0 1 1 1.3e-05 0.00011 11.4 0.0 13 29 7 23 5 29 0.87 # 3006 # 3308 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.482 1_4 - 101 HTH_23 PF13384.1 50 3.8e-07 19.1 0.0 1 1 1.4e-07 1.1e-06 17.7 0.0 22 37 8 23 7 32 0.94 # 3006 # 3308 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.482 1_4 - 101 HTH_7 PF02796.10 45 8e-06 15.1 0.0 1 1 2.1e-06 1.7e-05 14.1 0.0 25 40 7 22 6 24 0.93 # 3006 # 3308 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.482 1_4 - 101 HTH_29 PF13551.1 112 2.1e-05 14.1 0.0 1 1 6.9e-06 5.5e-05 12.7 0.0 16 34 7 25 2 99 0.75 # 3006 # 3308 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.482 1_4 - 101 HTH_28 PF13518.1 52 2.5e-07 20.1 0.0 1 1 7.4e-08 5.9e-07 18.9 0.0 16 33 7 24 5 26 0.93 # 3006 # 3308 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.482 1_4 - 101 HTH_Tnp_1_2 PF13022.1 142 7.7e-05 11.9 0.0 1 1 1.8e-05 0.00015 11.0 0.0 38 61 7 30 3 37 0.88 # 3006 # 3308 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.482 1_4 - 101 MerR PF00376.18 38 1.1e-05 14.4 0.0 1 1 2.6e-06 2.1e-05 13.5 0.0 3 19 7 23 6 23 0.94 # 3006 # 3308 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.482 1_4 - 101 HTH_17 PF12728.2 51 3.5e-14 42.2 0.3 1 2 8.1e-11 6.5e-10 28.6 0.0 1 22 3 24 3 59 0.80 # 3006 # 3308 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.482 1_4 - 101 HTH_17 PF12728.2 51 3.5e-14 42.2 0.3 2 2 1.4e-05 0.00011 11.9 0.3 28 51 76 99 73 99 0.92 # 3006 # 3308 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.482 1_4 - 101 Phage_AlpA PF05930.7 51 9.8e-15 43.5 0.4 1 2 5.6e-08 4.5e-07 19.0 0.0 2 23 2 23 1 30 0.91 # 3006 # 3308 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.482 1_4 - 101 Phage_AlpA PF05930.7 51 9.8e-15 43.5 0.4 2 2 4.2e-09 3.4e-08 22.6 0.4 28 51 73 95 67 95 0.93 # 3006 # 3308 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.482 # # Program: hmmsearch # Version: 3.1b1 (May 2013) # Pipeline mode: SEARCH # Query file: /tmp/b4e0933b-e551-4532-91ad-a53f1fcaf43b # Target file: checkm_output/bins/pm440/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm440/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/b4e0933b-e551-4532-91ad-a53f1fcaf43b checkm_output/bins/pm440/genes.faa # Current dir: /mnt/data/azomer/reads-for-assembly/files/output/allcontigs/output_1512029421078392887 # Date: Thu Nov 30 10:05:55 2017 # [ok]