# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_9 - 468 KaiC PF06745.8 227 5.1e-05 14.1 0.0 1 1 2.6e-06 0.00011 13.0 0.0 18 53 69 104 65 107 0.93 # 3447 # 4850 # -1 # ID=1_9;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.635 2_2 - 186 HTH_IclR PF09339.5 52 5.3e-06 17.7 0.2 1 1 4.6e-07 1.9e-05 15.9 0.0 15 40 155 180 151 181 0.85 # 2840 # 3397 # 1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.532 1_15 - 187 HTH_22 PF13309.1 64 2.4e-06 19.0 0.3 1 2 0.045 0.94 1.1 0.0 23 38 70 85 58 87 0.81 # 11299 # 11859 # -1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.579 1_15 - 187 HTH_22 PF13309.1 64 2.4e-06 19.0 0.3 2 2 2.7e-06 5.6e-05 14.6 0.0 47 64 166 183 164 183 0.93 # 11299 # 11859 # -1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.579 2_2 - 186 HTH_22 PF13309.1 64 0.0001 13.8 1.2 1 1 2.4e-05 0.0005 11.6 0.1 35 63 156 179 143 180 0.76 # 2840 # 3397 # 1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.532 4_1 - 57 HTH_Tnp_Tc3_2 PF01498.13 72 9.3e-05 14.2 0.0 1 1 7.3e-06 0.0001 14.1 0.0 14 39 26 51 11 55 0.89 # 1 # 171 # -1 # ID=4_1;partial=10;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.538 2_5 - 57 HTH_Tnp_Tc3_2 PF01498.13 72 9.7e-05 14.1 0.0 1 1 7e-06 9.8e-05 14.1 0.0 14 39 26 51 11 55 0.88 # 4536 # 4706 # 1 # ID=2_5;partial=01;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.532 5_3 - 57 HTH_Tnp_Tc3_2 PF01498.13 72 9.7e-05 14.1 0.0 1 1 7e-06 9.8e-05 14.1 0.0 14 39 26 51 11 55 0.88 # 1231 # 1401 # 1 # ID=5_3;partial=01;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.532 1_9 - 468 FtsK_SpoIIIE PF01580.13 205 0.00018 12.6 0.0 1 1 1.5e-05 0.00064 10.9 0.0 14 59 44 92 33 95 0.78 # 3447 # 4850 # -1 # ID=1_9;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.635 2_2 - 186 HTH_40 PF14493.1 91 0.00027 12.9 0.6 1 1 2.1e-05 0.0009 11.2 0.1 7 32 152 177 147 183 0.89 # 2840 # 3397 # 1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.532 2_2 - 186 HTH_38 PF13936.1 44 2.5e-06 18.7 0.0 1 1 2.9e-07 2.5e-06 18.7 0.0 9 41 147 179 145 182 0.93 # 2840 # 3397 # 1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.532 4_3 - 24 HTH_38 PF13936.1 44 3.9e-05 14.9 0.0 1 1 4.9e-06 4.1e-05 14.8 0.0 30 43 7 20 2 21 0.92 # 1538 # 1609 # 1 # ID=4_3;partial=01;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.542 4_1 - 57 HTH_38 PF13936.1 44 0.0001 13.5 0.0 1 1 3.9e-05 0.00033 11.9 0.0 30 43 40 53 38 54 0.90 # 1 # 171 # -1 # ID=4_1;partial=10;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.538 2_5 - 57 HTH_38 PF13936.1 44 0.00011 13.5 0.0 1 1 3.9e-05 0.00033 11.9 0.0 30 43 40 53 38 54 0.90 # 4536 # 4706 # 1 # ID=2_5;partial=01;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.532 5_3 - 57 HTH_38 PF13936.1 44 0.00011 13.5 0.0 1 1 3.9e-05 0.00033 11.9 0.0 30 43 40 53 38 54 0.90 # 1231 # 1401 # 1 # ID=5_3;partial=01;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.532 1_24 - 102 HTH_34 PF13601.1 80 2e-10 32.4 0.1 1 1 6.6e-12 2.8e-10 31.9 0.1 25 79 39 93 30 94 0.92 # 18439 # 18744 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.552 1_24 - 102 MarR PF01047.17 59 1.9e-05 16.1 0.0 1 1 1.2e-06 2.6e-05 15.6 0.0 29 58 40 69 13 70 0.92 # 18439 # 18744 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.552 1_8 - 244 MarR PF01047.17 59 6.1e-05 14.4 0.0 1 1 5.7e-06 0.00012 13.5 0.0 36 59 53 76 25 76 0.94 # 2716 # 3447 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.623 1_13 - 270 DUF3584 PF12128.3 1201 0.0071 5.3 22.4 1 2 2.7e-05 0.0011 7.9 3.3 598 657 28 87 21 94 0.90 # 7389 # 8198 # -1 # ID=1_13;partial=00;start_type=GTG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.459 1_13 - 270 DUF3584 PF12128.3 1201 0.0071 5.3 22.4 2 2 0.00076 0.032 3.1 11.2 608 674 107 173 101 180 0.83 # 7389 # 8198 # -1 # ID=1_13;partial=00;start_type=GTG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.459 1_15 - 187 HTH_8 PF02954.14 42 4.3e-05 14.7 0.2 1 2 0.023 0.98 0.8 0.1 2 12 114 124 113 124 0.85 # 11299 # 11859 # -1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.579 1_15 - 187 HTH_8 PF02954.14 42 4.3e-05 14.7 0.2 2 2 1.6e-05 0.00067 10.9 0.0 20 37 163 180 159 183 0.86 # 11299 # 11859 # -1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.579 1_26 - 195 TetR_N PF00440.18 47 1.4e-08 26.0 0.0 1 1 6.3e-10 2.6e-08 25.1 0.0 2 46 13 57 12 58 0.95 # 20228 # 20812 # -1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.607 1_9 - 468 AAA_19 PF13245.1 76 0.00033 12.1 0.0 1 1 2.4e-05 0.001 10.6 0.0 15 53 75 110 68 116 0.80 # 3447 # 4850 # -1 # ID=1_9;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.635 1_24 - 102 PadR PF03551.9 75 2.4e-23 73.4 0.5 1 1 1.6e-24 3.4e-23 73.0 0.5 1 74 15 84 15 85 0.97 # 18439 # 18744 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.552 1_8 - 244 PadR PF03551.9 75 9.4e-05 13.9 0.0 1 1 1.4e-05 0.0003 12.3 0.0 34 69 51 85 41 89 0.93 # 2716 # 3447 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.623 1_25 - 255 rve PF00665.21 120 4.5e-14 44.3 0.0 1 2 0.041 0.86 1.5 0.0 83 102 30 49 7 51 0.90 # 18971 # 19735 # 1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.610 1_25 - 255 rve PF00665.21 120 4.5e-14 44.3 0.0 2 2 3.4e-14 7e-13 40.5 0.0 8 117 73 179 69 182 0.90 # 18971 # 19735 # 1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.610 6_1 - 220 rve PF00665.21 120 1.3e-13 42.8 0.1 1 2 0.036 0.75 1.6 0.0 79 102 13 34 4 39 0.84 # 53 # 712 # -1 # ID=6_1;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.536 6_1 - 220 rve PF00665.21 120 1.3e-13 42.8 0.1 2 2 1e-13 2.2e-12 38.9 0.0 9 119 60 167 55 168 0.89 # 53 # 712 # -1 # ID=6_1;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.536 4_3 - 24 Terminase_5 PF06056.7 58 5.7e-05 14.4 0.1 1 1 1.4e-06 5.7e-05 14.4 0.1 23 37 7 21 3 24 0.87 # 1538 # 1609 # 1 # ID=4_3;partial=01;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.542 4_1 - 57 HTH_Tnp_1 PF01527.15 76 9.9e-06 17.2 0.8 1 1 1.9e-06 2e-05 16.3 0.8 4 47 6 54 4 57 0.81 # 1 # 171 # -1 # ID=4_1;partial=10;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.538 2_5 - 57 HTH_Tnp_1 PF01527.15 76 1.2e-05 17.0 0.5 1 1 2.2e-06 2.4e-05 16.0 0.5 4 47 6 54 4 57 0.81 # 4536 # 4706 # 1 # ID=2_5;partial=01;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.532 5_3 - 57 HTH_Tnp_1 PF01527.15 76 1.2e-05 17.0 0.5 1 1 2.2e-06 2.4e-05 16.0 0.5 4 47 6 54 4 57 0.81 # 1231 # 1401 # 1 # ID=5_3;partial=01;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.532 1_15 - 187 HTH_Tnp_1 PF01527.15 76 8.2e-05 14.3 0.1 1 1 1.8e-05 0.00019 13.1 0.1 15 44 154 182 140 186 0.79 # 11299 # 11859 # -1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.579 1_9 - 468 TraG-D_C PF12696.2 128 1.1e-09 29.9 0.0 1 1 4.6e-11 1.9e-09 29.1 0.0 1 127 278 404 278 405 0.79 # 3447 # 4850 # -1 # ID=1_9;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.635 6_1 - 220 DDE_3 PF13358.1 146 0.00026 12.4 0.0 1 1 1.6e-05 0.00069 11.1 0.0 32 90 67 126 44 138 0.88 # 53 # 712 # -1 # ID=6_1;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.536 1_8 - 244 Replic_Relax PF13814.1 191 1.7e-09 29.5 0.0 1 1 2.2e-10 4.6e-09 28.1 0.0 1 174 25 179 25 186 0.81 # 2716 # 3447 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.623 1_24 - 102 Replic_Relax PF13814.1 191 1.5e-05 16.6 0.1 1 1 7.8e-07 1.6e-05 16.5 0.1 16 77 31 90 17 96 0.85 # 18439 # 18744 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.552 1_8 - 244 HTH_27 PF13463.1 68 2e-06 19.8 0.0 1 2 7.8e-06 0.00033 12.7 0.0 35 60 50 76 24 85 0.78 # 2716 # 3447 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.623 1_8 - 244 HTH_27 PF13463.1 68 2e-06 19.8 0.0 2 2 0.0025 0.11 4.7 0.0 6 28 133 157 129 161 0.88 # 2716 # 3447 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.623 1_15 - 187 NUMOD1 PF07453.8 37 0.00022 12.8 0.0 1 1 1.1e-05 0.00045 11.8 0.0 19 37 164 182 164 182 0.94 # 11299 # 11859 # -1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.579 1_24 - 102 DUF3116 PF11313.3 85 0.00017 12.9 0.1 1 1 5.7e-06 0.00024 12.4 0.1 49 83 50 88 39 90 0.75 # 18439 # 18744 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.552 1_15 - 187 HTH_Tnp_IS630 PF01710.11 120 1.4e-05 16.5 0.0 1 1 1.3e-06 2.7e-05 15.6 0.0 10 42 157 185 151 186 0.86 # 11299 # 11859 # -1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.579 2_2 - 186 HTH_Tnp_IS630 PF01710.11 120 3.9e-05 15.0 0.0 1 1 3.9e-06 8.2e-05 14.0 0.0 8 44 148 184 145 185 0.90 # 2840 # 3397 # 1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.532 4_1 - 57 HTH_32 PF13565.1 77 2.4e-08 26.4 0.0 1 1 4.3e-09 3e-08 26.1 0.0 26 76 5 50 2 51 0.86 # 1 # 171 # -1 # ID=4_1;partial=10;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.538 2_5 - 57 HTH_32 PF13565.1 77 6.8e-08 25.0 0.0 1 1 1.2e-08 8.4e-08 24.7 0.0 26 76 5 50 2 51 0.84 # 4536 # 4706 # 1 # ID=2_5;partial=01;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.532 5_3 - 57 HTH_32 PF13565.1 77 6.8e-08 25.0 0.0 1 1 1.2e-08 8.4e-08 24.7 0.0 26 76 5 50 2 51 0.84 # 1231 # 1401 # 1 # ID=5_3;partial=01;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.532 6_1 - 220 HTH_32 PF13565.1 77 6.3e-06 18.7 0.7 1 1 2.8e-06 2e-05 17.1 0.1 46 76 9 35 1 36 0.81 # 53 # 712 # -1 # ID=6_1;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.536 1_25 - 255 HTH_32 PF13565.1 77 8.1e-05 15.1 0.2 1 1 4e-05 0.00028 13.4 0.2 37 76 15 50 6 51 0.83 # 18971 # 19735 # 1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.610 1_15 - 187 HTH_32 PF13565.1 77 0.0003 13.3 5.4 1 1 0.00016 0.0011 11.5 3.5 7 77 124 182 119 182 0.68 # 11299 # 11859 # -1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.579 1_15 - 187 HTH_3 PF01381.17 55 0.00018 13.1 0.4 1 1 1.1e-05 0.00048 11.7 0.4 2 31 152 183 151 184 0.86 # 11299 # 11859 # -1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.579 2_5 - 57 HTH_23 PF13384.1 50 1.5e-07 22.7 0.7 1 2 0.0092 0.055 5.0 0.1 7 27 11 35 7 36 0.72 # 4536 # 4706 # 1 # ID=2_5;partial=01;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.532 2_5 - 57 HTH_23 PF13384.1 50 1.5e-07 22.7 0.7 2 2 2.1e-06 1.3e-05 16.6 0.1 28 42 41 55 40 57 0.89 # 4536 # 4706 # 1 # ID=2_5;partial=01;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.532 5_3 - 57 HTH_23 PF13384.1 50 1.5e-07 22.7 0.7 1 2 0.0092 0.055 5.0 0.1 7 27 11 35 7 36 0.72 # 1231 # 1401 # 1 # ID=5_3;partial=01;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.532 5_3 - 57 HTH_23 PF13384.1 50 1.5e-07 22.7 0.7 2 2 2.1e-06 1.3e-05 16.6 0.1 28 42 41 55 40 57 0.89 # 1231 # 1401 # 1 # ID=5_3;partial=01;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.532 4_1 - 57 HTH_23 PF13384.1 50 3.9e-07 21.4 1.0 1 2 0.02 0.12 3.9 0.1 10 27 17 35 10 36 0.70 # 1 # 171 # -1 # ID=4_1;partial=10;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.538 4_1 - 57 HTH_23 PF13384.1 50 3.9e-07 21.4 1.0 2 2 2.1e-06 1.3e-05 16.6 0.1 28 42 41 55 40 57 0.89 # 1 # 171 # -1 # ID=4_1;partial=10;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.538 4_3 - 24 HTH_23 PF13384.1 50 1.3e-06 19.7 0.1 1 1 2.2e-07 1.3e-06 19.7 0.1 28 42 8 22 3 24 0.90 # 1538 # 1609 # 1 # ID=4_3;partial=01;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.542 6_1 - 220 HTH_23 PF13384.1 50 5e-06 17.8 0.6 1 1 1.2e-05 7.2e-05 14.2 0.1 28 42 26 40 25 48 0.87 # 53 # 712 # -1 # ID=6_1;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.536 1_15 - 187 HTH_23 PF13384.1 50 9.7e-06 16.9 1.3 1 1 2e-06 1.2e-05 16.6 0.1 10 39 151 183 148 184 0.82 # 11299 # 11859 # -1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.579 2_2 - 186 HTH_23 PF13384.1 50 1.9e-05 16.0 0.3 1 1 3.1e-06 1.9e-05 16.0 0.3 5 39 146 180 142 184 0.87 # 2840 # 3397 # 1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.532 1_15 - 187 HTH_7 PF02796.10 45 5.1e-17 53.3 0.3 1 1 4.7e-18 1e-16 52.3 0.3 1 44 141 184 141 185 0.98 # 11299 # 11859 # -1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.579 2_2 - 186 HTH_7 PF02796.10 45 7.7e-14 43.1 0.5 1 1 1e-14 2.2e-13 41.6 0.1 1 44 141 181 141 182 0.97 # 2840 # 3397 # 1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.532 1_24 - 102 FeoC PF09012.5 69 0.00039 11.8 0.0 1 1 1.4e-05 0.00059 11.3 0.0 24 48 38 62 30 72 0.81 # 18439 # 18744 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.552 2_2 - 186 HTH_29 PF13551.1 112 4.5e-05 15.3 0.6 1 2 0.025 1 1.3 0.2 24 46 114 136 88 153 0.67 # 2840 # 3397 # 1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.532 2_2 - 186 HTH_29 PF13551.1 112 4.5e-05 15.3 0.6 2 2 1e-05 0.00043 12.2 0.0 4 35 151 181 148 184 0.90 # 2840 # 3397 # 1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.532 6_1 - 220 DDE_Tnp_IS66 PF03050.9 271 3.9e-12 37.6 0.5 1 1 5.9e-13 5e-12 37.2 0.5 15 132 5 129 1 160 0.87 # 53 # 712 # -1 # ID=6_1;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.536 1_25 - 255 DDE_Tnp_IS66 PF03050.9 271 4.7e-10 30.7 0.4 1 1 8.4e-11 7e-10 30.2 0.4 11 133 16 144 8 183 0.86 # 18971 # 19735 # 1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.610 4_1 - 57 DDE_Tnp_IS66 PF03050.9 271 4.9e-07 20.8 0.0 1 1 5.8e-08 4.9e-07 20.8 0.0 4 50 9 55 6 57 0.92 # 1 # 171 # -1 # ID=4_1;partial=10;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.538 2_5 - 57 DDE_Tnp_IS66 PF03050.9 271 1.2e-06 19.6 0.0 1 1 1.4e-07 1.2e-06 19.6 0.0 4 50 9 55 6 57 0.90 # 4536 # 4706 # 1 # ID=2_5;partial=01;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.532 5_3 - 57 DDE_Tnp_IS66 PF03050.9 271 1.2e-06 19.6 0.0 1 1 1.4e-07 1.2e-06 19.6 0.0 4 50 9 55 6 57 0.90 # 1231 # 1401 # 1 # ID=5_3;partial=01;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.532 1_9 - 468 TrwB_AAD_bind PF10412.4 386 1.6e-07 21.9 0.0 1 2 3.2e-07 1.3e-05 15.6 0.0 14 57 69 113 60 126 0.85 # 3447 # 4850 # -1 # ID=1_9;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.635 1_9 - 468 TrwB_AAD_bind PF10412.4 386 1.6e-07 21.9 0.0 2 2 0.00083 0.035 4.3 0.0 296 368 333 406 238 420 0.83 # 3447 # 4850 # -1 # ID=1_9;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.635 1_15 - 187 HTH_psq PF05225.11 45 5.2e-05 14.5 0.0 1 1 2.5e-06 0.00011 13.5 0.0 21 39 166 184 165 186 0.91 # 11299 # 11859 # -1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.579 4_3 - 24 HTH_28 PF13518.1 52 1.4e-06 20.0 0.1 1 1 2.4e-07 1.4e-06 20.0 0.1 23 36 8 21 3 22 0.91 # 1538 # 1609 # 1 # ID=4_3;partial=01;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.542 2_5 - 57 HTH_28 PF13518.1 52 2.4e-06 19.2 1.9 1 1 1.7e-06 1e-05 17.2 1.9 14 36 27 54 10 55 0.69 # 4536 # 4706 # 1 # ID=2_5;partial=01;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.532 5_3 - 57 HTH_28 PF13518.1 52 2.4e-06 19.2 1.9 1 1 1.7e-06 1e-05 17.2 1.9 14 36 27 54 10 55 0.69 # 1231 # 1401 # 1 # ID=5_3;partial=01;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.532 4_1 - 57 HTH_28 PF13518.1 52 3.2e-06 18.9 2.6 1 1 2.6e-06 1.6e-05 16.6 2.6 12 36 25 54 10 55 0.69 # 1 # 171 # -1 # ID=4_1;partial=10;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.538 1_15 - 187 HTH_28 PF13518.1 52 2e-05 16.3 0.1 1 1 3.4e-06 2e-05 16.3 0.1 9 34 158 183 147 184 0.84 # 11299 # 11859 # -1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.579 6_1 - 220 HTH_28 PF13518.1 52 2.3e-05 16.1 1.1 1 1 1.6e-05 9.7e-05 14.1 1.1 22 36 25 39 2 40 0.76 # 53 # 712 # -1 # ID=6_1;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.536 2_2 - 186 HTH_28 PF13518.1 52 5.5e-05 14.9 0.0 1 1 3e-05 0.00018 13.2 0.0 8 33 154 179 148 184 0.82 # 2840 # 3397 # 1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.532 1_24 - 102 HTH_12 PF08461.5 66 1.1e-06 20.0 0.7 1 1 4.3e-08 1.8e-06 19.3 0.7 6 65 15 82 12 83 0.77 # 18439 # 18744 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.552 1_24 - 102 FUR PF01475.14 120 8.4e-06 17.4 0.0 1 1 2.1e-07 8.8e-06 17.4 0.0 29 74 29 77 12 99 0.79 # 18439 # 18744 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.552 1_15 - 187 HTH_10 PF04967.7 53 4.9e-06 17.8 0.2 1 2 0.055 2.3 -0.3 0.1 3 18 124 139 123 154 0.71 # 11299 # 11859 # -1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.579 1_15 - 187 HTH_10 PF04967.7 53 4.9e-06 17.8 0.2 2 2 8.6e-07 3.6e-05 15.0 0.0 27 45 165 183 162 185 0.93 # 11299 # 11859 # -1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.579 1_24 - 102 Penicillinase_R PF03965.11 115 1.1e-05 17.3 0.0 1 1 2.8e-07 1.2e-05 17.1 0.0 22 58 28 67 13 99 0.81 # 18439 # 18744 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.552 1_15 - 187 CENP-B_N PF04218.8 53 1.2e-06 19.6 0.0 1 1 5.4e-08 2.2e-06 18.7 0.0 17 43 156 182 152 186 0.92 # 11299 # 11859 # -1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.579 4_1 - 57 Arg_repressor PF01316.16 70 0.00013 13.2 0.0 1 1 1.3e-05 0.00018 12.7 0.0 23 46 29 52 26 54 0.92 # 1 # 171 # -1 # ID=4_1;partial=10;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.538 2_5 - 57 Arg_repressor PF01316.16 70 0.00013 13.2 0.0 1 1 1.3e-05 0.00018 12.7 0.0 23 46 29 52 26 54 0.92 # 4536 # 4706 # 1 # ID=2_5;partial=01;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.532 5_3 - 57 Arg_repressor PF01316.16 70 0.00013 13.2 0.0 1 1 1.3e-05 0.00018 12.7 0.0 23 46 29 52 26 54 0.92 # 1231 # 1401 # 1 # ID=5_3;partial=01;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.532 1_25 - 255 DDE_Tnp_IS240 PF13610.1 140 4.3e-54 174.0 0.0 1 1 2.6e-55 5.5e-54 173.6 0.0 3 139 73 211 71 212 0.98 # 18971 # 19735 # 1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.610 6_1 - 220 DDE_Tnp_IS240 PF13610.1 140 2.7e-53 171.4 0.0 1 1 1.7e-54 3.7e-53 171.0 0.0 4 139 60 197 58 198 0.99 # 53 # 712 # -1 # ID=6_1;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.536 1_15 - 187 HTH_11 PF08279.7 55 5.1e-05 14.6 0.1 1 2 0.076 3.2 -0.7 0.0 33 47 74 88 72 95 0.66 # 11299 # 11859 # -1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.579 1_15 - 187 HTH_11 PF08279.7 55 5.1e-05 14.6 0.1 2 2 1.3e-05 0.00053 11.4 0.0 20 37 166 183 162 184 0.91 # 11299 # 11859 # -1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.579 1_8 - 244 MarR_2 PF12802.2 62 1.5e-05 16.3 0.7 1 1 7.3e-07 3.1e-05 15.4 0.3 15 62 29 75 5 75 0.82 # 2716 # 3447 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.623 2_2 - 186 TrmB PF01978.14 68 2.4e-05 15.7 0.0 1 1 3.4e-06 4.8e-05 14.8 0.0 19 44 155 180 150 181 0.89 # 2840 # 3397 # 1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.532 1_24 - 102 TrmB PF01978.14 68 0.0001 13.7 0.1 1 1 2.2e-05 0.00031 12.2 0.1 34 62 40 73 31 78 0.84 # 18439 # 18744 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.552 1_8 - 244 TrmB PF01978.14 68 0.00032 12.1 0.1 1 1 9e-05 0.0013 10.2 0.0 23 55 34 67 28 72 0.85 # 2716 # 3447 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.623 1_28 - 302 LYTB PF02401.13 281 0.00029 11.5 0.0 1 1 2e-05 0.00083 9.9 0.0 236 272 81 117 70 124 0.91 # 22047 # 22952 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.657 1_9 - 468 AAA_10 PF12846.2 304 4.7e-16 50.7 0.0 1 1 1.9e-16 7.9e-15 46.7 0.0 3 293 72 352 70 360 0.78 # 3447 # 4850 # -1 # ID=1_9;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.635 2_2 - 186 HTH_20 PF12840.2 61 1.8e-06 19.4 0.1 1 2 0.0081 0.34 2.5 0.0 33 52 8 27 6 28 0.90 # 2840 # 3397 # 1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.532 2_2 - 186 HTH_20 PF12840.2 61 1.8e-06 19.4 0.1 2 2 9.1e-06 0.00038 12.0 0.1 3 43 110 177 108 180 0.91 # 2840 # 3397 # 1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.532 1_13 - 270 AAA_13 PF13166.1 712 0.034 4.2 22.3 1 2 0.00031 0.013 5.6 4.5 406 458 33 85 8 94 0.54 # 7389 # 8198 # -1 # ID=1_13;partial=00;start_type=GTG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.459 1_13 - 270 AAA_13 PF13166.1 712 0.034 4.2 22.3 2 2 0.00054 0.023 4.7 9.9 82 160 106 168 88 206 0.52 # 7389 # 8198 # -1 # ID=1_13;partial=00;start_type=GTG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.459 1_21 - 280 Pterin_bind PF00809.17 210 1.1e-58 189.7 0.0 1 1 3e-60 1.3e-58 189.5 0.0 1 210 7 216 7 216 0.98 # 15897 # 16736 # 1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.617 # # Program: hmmsearch # Version: 3.1b1 (May 2013) # Pipeline mode: SEARCH # Query file: /tmp/0cbcbbb1-f42f-4d81-8921-63414dba6161 # Target file: checkm_output/bins/pm430/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm430/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/0cbcbbb1-f42f-4d81-8921-63414dba6161 checkm_output/bins/pm430/genes.faa # Current dir: /mnt/data/azomer/reads-for-assembly/files/output/allcontigs/output_1512029421078392887 # Date: Thu Nov 30 10:05:38 2017 # [ok]