# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_1 - 312 HTH_38 PF13936.1 44 5.8e-08 21.0 0.0 1 2 0.017 0.083 1.3 0.0 14 35 141 162 137 163 0.88 # 155 # 1090 # -1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.536 1_1 - 312 HTH_38 PF13936.1 44 5.8e-08 21.0 0.0 2 2 2.2e-07 1.1e-06 16.9 0.0 16 39 283 306 275 307 0.91 # 155 # 1090 # -1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.536 1_1 - 312 Sigma70_r4_2 PF08281.7 54 1e-07 20.1 0.1 1 2 0.005 0.025 2.9 0.0 23 42 144 163 139 166 0.84 # 155 # 1090 # -1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.536 1_1 - 312 Sigma70_r4_2 PF08281.7 54 1e-07 20.1 0.1 2 2 1.2e-06 5.9e-06 14.5 0.0 24 46 285 307 276 309 0.89 # 155 # 1090 # -1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.536 1_3 - 108 RecR PF02132.10 41 1.7e-05 13.0 0.8 1 2 0.095 0.48 -1.3 0.0 26 37 65 76 63 77 0.64 # 1978 # 2301 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.358 1_3 - 108 RecR PF02132.10 41 1.7e-05 13.0 0.8 2 2 1.4e-05 6.8e-05 11.1 0.0 1 24 79 101 79 105 0.90 # 1978 # 2301 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.358 1_1 - 312 Terminase_5 PF06056.7 58 2.2e-07 19.1 0.0 1 1 1.6e-07 7.8e-07 17.4 0.0 12 35 286 309 275 310 0.88 # 155 # 1090 # -1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.536 1_1 - 312 GerE PF00196.14 58 1.2e-08 23.0 0.2 1 2 0.00066 0.0033 5.5 0.0 8 32 137 161 136 163 0.95 # 155 # 1090 # -1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.536 1_1 - 312 GerE PF00196.14 58 1.2e-08 23.0 0.2 2 2 7.3e-07 3.7e-06 15.0 0.1 12 38 281 307 279 309 0.90 # 155 # 1090 # -1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.536 1_1 - 312 Trp_repressor PF01371.14 88 2.5e-05 12.9 0.0 1 1 1.4e-05 7e-05 11.5 0.0 41 66 280 304 271 308 0.87 # 155 # 1090 # -1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.536 1_1 - 312 Sigma70_r4 PF04545.11 50 4.1e-08 21.2 0.0 1 2 0.00011 0.00055 8.0 0.0 9 35 137 162 136 167 0.81 # 155 # 1090 # -1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.536 1_1 - 312 Sigma70_r4 PF04545.11 50 4.1e-08 21.2 0.0 2 2 1.5e-05 7.5e-05 10.8 0.0 17 39 278 306 275 309 0.82 # 155 # 1090 # -1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.536 1_1 - 312 HTH_3 PF01381.17 55 9.3e-09 23.8 0.0 1 2 0.0054 0.027 3.2 0.0 3 24 142 162 140 163 0.77 # 155 # 1090 # -1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.536 1_1 - 312 HTH_3 PF01381.17 55 9.3e-09 23.8 0.0 2 2 1e-07 5.1e-07 18.3 0.0 5 33 283 311 279 311 0.90 # 155 # 1090 # -1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.536 1_1 - 312 HTH_23 PF13384.1 50 1.1e-11 32.9 0.1 1 1 1.5e-11 7.5e-11 30.2 0.0 5 39 275 309 272 310 0.94 # 155 # 1090 # -1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.536 1_1 - 312 HTH_19 PF12844.2 64 3.5e-06 15.8 0.0 1 2 0.034 0.17 0.8 0.0 10 27 146 162 140 167 0.77 # 155 # 1090 # -1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.536 1_1 - 312 HTH_19 PF12844.2 64 3.5e-06 15.8 0.0 2 2 1.9e-05 9.7e-05 11.2 0.1 10 36 285 311 282 311 0.95 # 155 # 1090 # -1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.536 1_1 - 312 HTH_29 PF13551.1 112 3.5e-06 15.9 0.2 1 1 3.3e-06 1.7e-05 13.7 0.0 1 33 277 308 277 310 0.93 # 155 # 1090 # -1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.536 1_1 - 312 HTH_28 PF13518.1 52 2.4e-08 22.7 0.3 1 1 1.5e-08 7.6e-08 21.1 0.0 2 33 277 308 276 310 0.86 # 155 # 1090 # -1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.536 1_1 - 312 HTH_Tnp_ISL3 PF13542.1 52 2.3e-05 12.3 0.0 1 1 1.5e-05 7.5e-05 10.7 0.0 29 47 289 307 284 307 0.92 # 155 # 1090 # -1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.536 1_1 - 312 HTH_17 PF12728.2 51 1.2e-07 20.6 0.6 1 3 0.00087 0.0043 6.1 0.1 2 16 148 162 147 164 0.91 # 155 # 1090 # -1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.536 1_1 - 312 HTH_17 PF12728.2 51 1.2e-07 20.6 0.6 2 3 0.049 0.25 0.5 0.0 13 25 182 194 177 198 0.84 # 155 # 1090 # -1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.536 1_1 - 312 HTH_17 PF12728.2 51 1.2e-07 20.6 0.6 3 3 5.7e-05 0.00029 9.9 0.0 2 25 288 310 288 311 0.86 # 155 # 1090 # -1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.536 1_1 - 312 HTH_11 PF08279.7 55 8.6e-08 20.5 0.0 1 2 0.0021 0.011 4.3 0.0 15 30 146 162 138 163 0.79 # 155 # 1090 # -1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.536 1_1 - 312 HTH_11 PF08279.7 55 8.6e-08 20.5 0.0 2 2 3.6e-06 1.8e-05 13.1 0.0 16 34 288 306 277 306 0.86 # 155 # 1090 # -1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.536 1_1 - 312 Phage_terminase PF10668.4 60 1.5e-06 16.7 0.0 1 1 1e-06 5.2e-06 15.0 0.0 25 44 290 309 284 311 0.90 # 155 # 1090 # -1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.536 # # Program: hmmsearch # Version: 3.1b1 (May 2013) # Pipeline mode: SEARCH # Query file: /tmp/495c284c-0237-4fce-a70e-3c2c1be77492 # Target file: checkm_output/bins/pm405/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm405/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/495c284c-0237-4fce-a70e-3c2c1be77492 checkm_output/bins/pm405/genes.faa # Current dir: /mnt/data/azomer/reads-for-assembly/files/output/allcontigs/output_1512029421078392887 # Date: Thu Nov 30 10:04:56 2017 # [ok]