# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_4 - 295 ABC_tran PF00005.22 137 1.1e-07 21.2 0.1 1 1 4.3e-08 2.6e-07 20.0 0.0 7 36 33 62 27 118 0.82 # 3095 # 3979 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.363 1_4 - 295 Sigma54_activat PF00158.21 168 1.3e-05 13.6 0.0 1 1 4.1e-06 2.5e-05 12.7 0.0 9 45 24 60 18 81 0.86 # 3095 # 3979 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.363 1_4 - 295 AAA_23 PF13476.1 202 0.00043 9.6 5.2 1 1 0.0002 0.0012 8.1 5.2 20 39 38 57 29 248 0.82 # 3095 # 3979 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.363 1_4 - 295 NAD_Gly3P_dh_N PF01210.18 157 3.1e-06 15.9 0.3 1 2 0.03 0.18 0.5 0.0 41 74 46 79 15 84 0.76 # 3095 # 3979 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.363 1_4 - 295 NAD_Gly3P_dh_N PF01210.18 157 3.1e-06 15.9 0.3 2 2 4.2e-06 2.5e-05 13.0 0.3 33 127 174 271 153 287 0.77 # 3095 # 3979 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.363 1_5 - 145 zf-dskA_traR PF01258.12 36 0.00015 10.6 15.1 1 4 0.0063 0.038 2.8 0.1 3 13 35 46 34 49 0.77 # 4015 # 4449 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.384 1_5 - 145 zf-dskA_traR PF01258.12 36 0.00015 10.6 15.1 2 4 0.0021 0.013 4.3 0.4 4 11 68 75 65 81 0.72 # 4015 # 4449 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.384 1_5 - 145 zf-dskA_traR PF01258.12 36 0.00015 10.6 15.1 3 4 0.0022 0.013 4.3 0.3 24 34 97 107 95 109 0.85 # 4015 # 4449 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.384 1_5 - 145 zf-dskA_traR PF01258.12 36 0.00015 10.6 15.1 4 4 0.0003 0.0018 7.1 1.0 2 12 123 135 122 138 0.87 # 4015 # 4449 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.384 1_4 - 295 AAA_22 PF13401.1 131 1.3e-05 14.4 0.0 1 2 7.6e-05 0.00046 9.3 0.0 7 29 40 62 34 121 0.65 # 3095 # 3979 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.363 1_4 - 295 AAA_22 PF13401.1 131 1.3e-05 14.4 0.0 2 2 0.0075 0.045 2.9 0.0 36 69 183 236 161 261 0.72 # 3095 # 3979 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.363 1_4 - 295 FeoB_N PF02421.13 156 1.2e-08 23.3 0.1 1 2 4.3e-08 2.6e-07 19.0 0.0 3 86 40 123 38 165 0.74 # 3095 # 3979 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.363 1_4 - 295 FeoB_N PF02421.13 156 1.2e-08 23.3 0.1 2 2 0.0077 0.046 1.9 0.0 135 156 196 217 174 217 0.78 # 3095 # 3979 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.363 1_5 - 145 A2L_zn_ribbon PF08792.5 33 7.1e-05 11.3 10.8 1 3 0.012 0.069 1.8 0.1 24 30 39 45 36 48 0.77 # 4015 # 4449 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.384 1_5 - 145 A2L_zn_ribbon PF08792.5 33 7.1e-05 11.3 10.8 2 3 0.00063 0.0038 5.8 0.3 24 31 70 77 68 78 0.77 # 4015 # 4449 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.384 1_5 - 145 A2L_zn_ribbon PF08792.5 33 7.1e-05 11.3 10.8 3 3 6.3e-05 0.00038 9.0 0.2 4 15 127 138 125 143 0.83 # 4015 # 4449 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.384 1_4 - 295 NB-ARC PF00931.17 287 2.2e-05 12.3 1.5 1 3 6.2e-05 0.00037 8.3 0.0 20 42 38 60 22 67 0.86 # 3095 # 3979 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.363 1_4 - 295 NB-ARC PF00931.17 287 2.2e-05 12.3 1.5 2 3 0.018 0.11 0.2 0.1 64 120 106 170 98 183 0.61 # 3095 # 3979 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.363 1_4 - 295 NB-ARC PF00931.17 287 2.2e-05 12.3 1.5 3 3 0.0077 0.046 1.4 0.0 52 95 199 243 176 265 0.68 # 3095 # 3979 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.363 1_5 - 145 OrfB_Zn_ribbon PF07282.6 69 0.007 5.1 17.5 1 3 0.0016 0.0093 4.7 1.9 23 43 31 51 21 65 0.72 # 4015 # 4449 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.384 1_5 - 145 OrfB_Zn_ribbon PF07282.6 69 0.007 5.1 17.5 2 3 0.0009 0.0054 5.4 1.5 9 46 47 85 44 98 0.75 # 4015 # 4449 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.384 1_5 - 145 OrfB_Zn_ribbon PF07282.6 69 0.007 5.1 17.5 3 3 0.00065 0.0039 5.9 0.7 30 40 128 138 121 144 0.74 # 4015 # 4449 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.384 1_4 - 295 AAA_18 PF13238.1 129 7.8e-06 15.2 0.2 1 1 4.7e-06 2.8e-05 13.4 0.2 1 67 40 148 40 199 0.61 # 3095 # 3979 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.363 1_4 - 295 DUF258 PF03193.11 161 9.9e-10 26.7 0.0 1 1 3.9e-10 2.3e-09 25.5 0.0 23 112 24 110 3 121 0.77 # 3095 # 3979 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.363 1_4 - 295 DUF87 PF01935.12 229 8.3e-05 11.4 3.0 1 2 1.3e-05 8e-05 11.4 0.7 26 48 40 62 36 80 0.90 # 3095 # 3979 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.363 1_4 - 295 DUF87 PF01935.12 229 8.3e-05 11.4 3.0 2 2 0.069 0.42 -0.7 0.0 134 139 98 103 65 217 0.63 # 3095 # 3979 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.363 1_4 - 295 AIG1 PF04548.11 212 1.3e-11 32.9 0.0 1 1 3.5e-12 2.1e-11 32.2 0.0 5 101 42 134 39 168 0.76 # 3095 # 3979 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.363 1_4 - 295 MMR_HSR1 PF01926.18 116 1.2e-19 59.4 0.1 1 1 5.7e-20 3.4e-19 57.9 0.0 2 115 40 155 39 156 0.78 # 3095 # 3979 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.363 1_4 - 295 Miro PF08477.8 119 9e-07 18.4 0.0 1 1 3e-07 1.8e-06 17.4 0.0 2 81 40 123 39 158 0.77 # 3095 # 3979 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.363 1_4 - 295 AAA_17 PF13207.1 121 1.6e-06 17.9 1.4 1 1 7.6e-07 4.6e-06 16.5 1.4 1 80 39 135 39 281 0.71 # 3095 # 3979 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.363 1_4 - 295 ArgK PF03308.11 267 1.3e-06 16.2 0.7 1 2 0.00016 0.00097 6.8 0.1 20 50 28 58 11 70 0.80 # 3095 # 3979 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.363 1_4 - 295 ArgK PF03308.11 267 1.3e-06 16.2 0.7 2 2 7.8e-05 0.00047 7.8 0.1 204 263 196 255 151 259 0.86 # 3095 # 3979 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.363 1_4 - 295 Gtr1_RagA PF04670.7 232 3.6e-09 25.0 0.0 1 1 9.2e-10 5.5e-09 24.3 0.0 4 126 42 165 40 248 0.77 # 3095 # 3979 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.363 1_4 - 295 TIGR03594 TIGR03594 432 1.3e-21 65.6 0.0 1 2 2.4e-18 1.4e-17 52.3 0.0 1 122 38 161 38 171 0.89 # 3095 # 3979 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.363 1_4 - 295 TIGR03594 TIGR03594 432 1.3e-21 65.6 0.0 2 2 6.6e-06 3.9e-05 11.3 0.0 124 167 185 228 176 250 0.70 # 3095 # 3979 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.363 1_4 - 295 TIGR03598 TIGR03598 186 1.4e-09 26.5 0.0 1 1 4.3e-10 2.6e-09 25.6 0.0 16 144 35 162 21 218 0.71 # 3095 # 3979 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.363 1_4 - 295 KAP_NTPase PF07693.9 325 3.6e-05 11.7 0.1 1 1 1.3e-05 7.5e-05 10.7 0.1 8 41 26 58 20 61 0.74 # 3095 # 3979 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.363 1_4 - 295 AAA_10 PF12846.2 304 3.6e-05 12.2 0.0 1 1 1.1e-05 6.5e-05 11.3 0.0 4 28 40 64 37 94 0.87 # 3095 # 3979 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.363 1_4 - 295 Dynamin_N PF00350.18 168 1.3e-12 36.8 0.0 1 2 6.9e-07 4.2e-06 15.6 0.1 1 38 40 78 40 81 0.87 # 3095 # 3979 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.363 1_4 - 295 Dynamin_N PF00350.18 168 1.3e-12 36.8 0.0 2 2 6.5e-08 3.9e-07 18.9 0.0 97 167 81 156 76 157 0.88 # 3095 # 3979 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.363 1_4 - 295 TIGR00436 TIGR00436 270 1.5e-18 55.6 0.0 1 1 1.5e-18 8.9e-18 53.1 0.0 3 182 40 240 38 249 0.70 # 3095 # 3979 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.363 1_4 - 295 Septin PF00735.13 281 1.8e-05 12.7 0.0 1 1 9e-06 5.4e-05 11.2 0.0 9 107 42 129 36 146 0.71 # 3095 # 3979 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.363 1_4 - 295 GTP_EFTU PF00009.22 188 4.8e-10 28.1 0.0 1 1 7.4e-09 4.5e-08 21.6 0.0 6 187 40 222 35 223 0.65 # 3095 # 3979 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.363 # # Program: hmmsearch # Version: 3.1b1 (May 2013) # Pipeline mode: SEARCH # Query file: /tmp/af126e03-5df5-40a7-940c-03f25751d65e # Target file: checkm_output/bins/pm402/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm402/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/af126e03-5df5-40a7-940c-03f25751d65e checkm_output/bins/pm402/genes.faa # Current dir: /mnt/data/azomer/reads-for-assembly/files/output/allcontigs/output_1512029421078392887 # Date: Thu Nov 30 10:04:51 2017 # [ok]