# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_18 - 344 KaiC PF06745.8 227 4.7e-05 14.3 0.1 1 1 1.8e-06 8.1e-05 13.5 0.1 7 37 151 181 147 187 0.93 # 13067 # 14098 # 1 # ID=1_18;partial=00;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.408 1_18 - 344 ABC_tran PF00005.22 137 3.4e-05 15.9 0.0 1 1 2.1e-06 9.5e-05 14.5 0.0 7 32 159 184 155 226 0.85 # 13067 # 14098 # 1 # ID=1_18;partial=00;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.408 1_27 - 116 HTH_22 PF13309.1 64 7.5e-05 14.3 0.0 1 1 3.2e-06 0.00014 13.4 0.0 45 62 25 42 13 44 0.94 # 20498 # 20845 # -1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.509 1_26 - 83 rve_3 PF13683.1 67 2.5e-16 50.8 0.2 1 1 6.9e-18 3e-16 50.5 0.2 12 67 2 63 1 63 0.89 # 20213 # 20461 # -1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.454 1_33 - 215 HTH_38 PF13936.1 44 0.0003 12.2 0.1 1 2 0.062 2.7 -0.5 0.0 3 20 81 98 79 99 0.86 # 29999 # 30643 # -1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.476 1_33 - 215 HTH_38 PF13936.1 44 0.0003 12.2 0.1 2 2 6.7e-06 0.0003 12.2 0.1 28 43 191 206 171 207 0.80 # 29999 # 30643 # -1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.476 1_18 - 344 MobB PF03205.9 140 5.2e-05 14.7 0.0 1 1 2.1e-06 9.4e-05 13.9 0.0 2 42 165 204 164 227 0.86 # 13067 # 14098 # 1 # ID=1_18;partial=00;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.408 1_28 - 844 SecA_DEAD PF07517.9 266 8.7e-05 13.6 0.0 1 1 4.4e-06 0.00019 12.4 0.0 91 138 54 102 40 113 0.80 # 21199 # 23730 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.331 1_27 - 116 HTH_8 PF02954.14 42 0.00011 13.5 0.0 1 1 5.1e-06 0.00022 12.5 0.0 20 37 24 41 18 41 0.94 # 20498 # 20845 # -1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.509 1_26 - 83 rve PF00665.21 120 4.1e-06 18.7 0.0 1 1 2.4e-07 1.1e-05 17.3 0.0 102 120 2 20 1 20 0.93 # 20213 # 20461 # -1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.454 1_29 - 634 AAA_23 PF13476.1 202 5e-07 21.9 0.5 1 1 2.3e-08 5e-07 21.9 0.5 24 143 28 158 8 264 0.57 # 25003 # 26904 # -1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.354 1_18 - 344 AAA_23 PF13476.1 202 0.00019 13.5 0.2 1 1 1.7e-05 0.00037 12.6 0.2 21 38 165 182 158 185 0.89 # 13067 # 14098 # 1 # ID=1_18;partial=00;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.408 1_18 - 344 Zeta_toxin PF06414.7 201 1.1e-05 16.3 0.0 1 1 3.9e-07 1.7e-05 15.7 0.0 11 59 157 208 148 232 0.81 # 13067 # 14098 # 1 # ID=1_18;partial=00;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.408 1_29 - 634 SMC_N PF02463.14 220 4.2e-06 17.8 1.2 1 2 3.3e-07 1.4e-05 16.1 0.4 3 46 4 45 2 55 0.81 # 25003 # 26904 # -1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.354 1_29 - 634 SMC_N PF02463.14 220 4.2e-06 17.8 1.2 2 2 0.089 3.9 -1.7 0.0 86 113 155 182 140 203 0.59 # 25003 # 26904 # -1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.354 1_27 - 116 HTH_Tnp_1 PF01527.15 76 8.9e-05 14.2 0.0 1 1 2.8e-06 0.00012 13.8 0.0 12 58 12 62 10 77 0.77 # 20498 # 20845 # -1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.509 1_19 - 612 TraG-D_C PF12696.2 128 1.5e-27 87.8 0.0 1 1 6.3e-29 2.8e-27 86.9 0.0 2 127 416 534 415 535 0.86 # 14101 # 15936 # 1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.421 1_29 - 634 AAA_21 PF13304.1 303 1.5e-14 46.3 9.6 1 2 3.5e-16 1.5e-14 46.3 9.6 4 302 28 374 26 375 0.70 # 25003 # 26904 # -1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.354 1_29 - 634 AAA_21 PF13304.1 303 1.5e-14 46.3 9.6 2 2 0.067 2.9 -0.6 1.9 44 133 388 461 378 544 0.60 # 25003 # 26904 # -1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.354 1_22 - 718 zf-C4_Topoisom PF01396.14 39 0.00058 11.2 1.3 1 1 2.7e-05 0.0012 10.2 1.3 4 21 635 650 632 661 0.78 # 16732 # 18885 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.458 1_26 - 83 rve_2 PF13333.1 52 6.2e-07 21.2 0.2 1 1 2.3e-08 1e-06 20.6 0.2 12 46 25 65 10 65 0.77 # 20213 # 20461 # -1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.454 1_18 - 344 AAA_22 PF13401.1 131 0.00022 13.1 0.0 1 1 8.7e-06 0.00038 12.4 0.0 4 30 163 189 160 240 0.68 # 13067 # 14098 # 1 # ID=1_18;partial=00;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.408 1_18 - 344 AAA_29 PF13555.1 62 2.2e-05 15.7 0.0 1 1 1.1e-06 4.8e-05 14.7 0.0 10 43 150 183 143 186 0.82 # 13067 # 14098 # 1 # ID=1_18;partial=00;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.408 1_27 - 116 LZ_Tnp_IS481 PF13011.1 85 4.2e-06 18.9 0.0 1 1 1.3e-07 5.7e-06 18.4 0.0 23 80 20 77 9 81 0.87 # 20498 # 20845 # -1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.509 1_27 - 116 HTH_32 PF13565.1 77 1.3e-05 17.7 0.0 1 2 0.035 1.5 1.5 0.0 66 76 31 42 18 43 0.72 # 20498 # 20845 # -1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.509 1_27 - 116 HTH_32 PF13565.1 77 1.3e-05 17.7 0.0 2 2 5.9e-07 2.6e-05 16.8 0.0 1 74 38 108 38 111 0.69 # 20498 # 20845 # -1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.509 1_33 - 215 HTH_23 PF13384.1 50 2.9e-09 28.2 0.1 1 1 3e-10 6.7e-09 27.0 0.1 5 46 171 210 167 214 0.89 # 29999 # 30643 # -1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.476 1_27 - 116 HTH_23 PF13384.1 50 7.6e-09 26.9 0.0 1 1 4.8e-10 1.1e-08 26.4 0.0 5 49 10 54 6 55 0.86 # 20498 # 20845 # -1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.509 1_33 - 215 HTH_7 PF02796.10 45 3e-08 25.2 1.8 1 2 0.00081 0.018 6.8 0.0 2 26 79 104 79 105 0.86 # 29999 # 30643 # -1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.476 1_33 - 215 HTH_7 PF02796.10 45 3e-08 25.2 1.8 2 2 4e-07 8.7e-06 17.4 0.0 1 38 165 200 165 201 0.96 # 29999 # 30643 # -1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.476 1_27 - 116 HTH_7 PF02796.10 45 2e-06 19.4 0.0 1 1 1.5e-07 3.4e-06 18.7 0.0 22 41 23 42 12 45 0.85 # 20498 # 20845 # -1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.509 1_27 - 116 HTH_29 PF13551.1 112 1.1e-25 81.8 0.0 1 1 6e-27 1.3e-25 81.5 0.0 2 108 12 111 11 113 0.93 # 20498 # 20845 # -1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.509 1_33 - 215 HTH_29 PF13551.1 112 0.00036 12.5 3.3 1 1 6e-05 0.0013 10.6 0.0 3 35 175 206 173 212 0.92 # 29999 # 30643 # -1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.476 1_28 - 844 ResIII PF04851.10 184 3.5e-10 31.7 0.0 1 1 2.8e-11 1.2e-09 29.9 0.0 4 80 35 112 33 192 0.84 # 21199 # 23730 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.331 1_19 - 612 TrwB_AAD_bind PF10412.4 386 4.7e-21 66.5 0.0 1 1 1.7e-22 7.5e-21 65.8 0.0 165 380 331 548 306 552 0.85 # 14101 # 15936 # 1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.421 1_29 - 634 TIGR00611 TIGR00611 365 2.8e-05 14.8 0.1 1 1 1.3e-06 5.9e-05 13.7 0.1 2 44 2 44 1 50 0.72 # 25003 # 26904 # -1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.354 1_18 - 344 DUF258 PF03193.11 161 9.1e-05 13.4 0.0 1 1 3.3e-06 0.00015 12.8 0.0 31 59 158 187 144 220 0.82 # 13067 # 14098 # 1 # ID=1_18;partial=00;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.408 1_27 - 116 HTH_28 PF13518.1 52 3.3e-11 34.8 0.0 1 1 2.1e-12 4.6e-11 34.4 0.0 7 51 17 61 11 62 0.87 # 20498 # 20845 # -1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.509 1_33 - 215 HTH_28 PF13518.1 52 6e-06 18.0 0.1 1 1 8.5e-07 1.9e-05 16.4 0.1 4 35 175 206 172 209 0.92 # 29999 # 30643 # -1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.476 1_28 - 844 DEAD PF00270.24 169 4e-10 31.2 0.0 1 1 6.8e-11 1.5e-09 29.3 0.0 13 133 52 165 36 194 0.76 # 21199 # 23730 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.331 1_18 - 344 DEAD PF00270.24 169 0.00012 13.3 0.0 1 1 8.8e-06 0.00019 12.7 0.0 6 33 154 182 151 246 0.77 # 13067 # 14098 # 1 # ID=1_18;partial=00;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.408 1_18 - 344 T2SE PF00437.15 272 4.3e-53 171.6 0.0 1 1 1.2e-54 5.3e-53 171.3 0.0 12 266 25 311 15 316 0.88 # 13067 # 14098 # 1 # ID=1_18;partial=00;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.408 1_18 - 344 UPF0079 PF02367.12 123 0.00015 13.2 0.0 1 1 6.2e-06 0.00027 12.3 0.0 8 39 156 187 151 196 0.83 # 13067 # 14098 # 1 # ID=1_18;partial=00;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.408 1_18 - 344 AAA_17 PF13207.1 121 2e-05 17.2 0.0 1 1 1e-06 4.4e-05 16.1 0.0 2 43 166 207 165 243 0.80 # 13067 # 14098 # 1 # ID=1_18;partial=00;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.408 1_18 - 344 AAA_25 PF13481.1 194 7.4e-05 13.9 0.0 1 1 2.4e-06 0.00011 13.4 0.0 22 51 152 181 137 247 0.87 # 13067 # 14098 # 1 # ID=1_18;partial=00;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.408 1_29 - 634 AAA_15 PF13175.1 415 1.8e-14 45.3 4.4 1 2 1.8e-09 7.9e-08 23.4 1.2 4 115 6 196 3 262 0.66 # 25003 # 26904 # -1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.354 1_29 - 634 AAA_15 PF13175.1 415 1.8e-14 45.3 4.4 2 2 3.7e-09 1.6e-07 22.3 0.1 339 413 302 372 282 374 0.81 # 25003 # 26904 # -1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.354 1_18 - 344 AAA_33 PF13671.1 143 7.1e-06 17.7 0.0 1 2 0.072 3.2 -0.6 0.0 7 39 96 127 93 151 0.79 # 13067 # 14098 # 1 # ID=1_18;partial=00;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.408 1_18 - 344 AAA_33 PF13671.1 143 7.1e-06 17.7 0.0 2 2 7.5e-07 3.3e-05 15.5 0.0 2 25 166 191 165 258 0.69 # 13067 # 14098 # 1 # ID=1_18;partial=00;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.408 1_33 - 215 CENP-B_N PF04218.8 53 9.9e-05 13.5 0.1 1 1 5.7e-06 0.00025 12.2 0.1 14 46 175 207 174 212 0.95 # 29999 # 30643 # -1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.476 1_19 - 612 T4SS-DNA_transf PF02534.9 469 5.4e-146 478.5 0.0 1 1 1.5e-147 6.7e-146 478.2 0.0 2 461 102 571 101 579 0.98 # 14101 # 15936 # 1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.421 1_18 - 344 ATP_bind_1 PF03029.12 238 0.0002 12.7 0.0 1 1 6.8e-06 0.0003 12.1 0.0 2 23 169 190 168 206 0.87 # 13067 # 14098 # 1 # ID=1_18;partial=00;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.408 1_22 - 718 Toprim_Crpt PF13342.1 62 3e-20 63.5 2.5 1 1 6.8e-22 3e-20 63.5 2.5 1 60 652 711 652 713 0.92 # 16732 # 18885 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.458 1_27 - 116 HTH_17 PF12728.2 51 1.8e-05 16.8 0.0 1 1 1.6e-06 3.4e-05 15.8 0.0 4 27 25 51 23 61 0.76 # 20498 # 20845 # -1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.509 1_33 - 215 HTH_17 PF12728.2 51 7.8e-05 14.7 0.1 1 2 0.019 0.42 2.7 0.0 16 29 89 102 88 112 0.85 # 29999 # 30643 # -1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.476 1_33 - 215 HTH_17 PF12728.2 51 7.8e-05 14.7 0.1 2 2 0.00027 0.0059 8.7 0.0 5 25 187 207 185 212 0.89 # 29999 # 30643 # -1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.476 1_29 - 634 DUF2813 PF11398.3 373 2.9e-06 18.3 0.0 1 2 3.2e-05 0.0014 9.4 0.0 25 87 26 86 1 95 0.77 # 25003 # 26904 # -1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.354 1_29 - 634 DUF2813 PF11398.3 373 2.9e-06 18.3 0.0 2 2 0.00023 0.0099 6.6 0.0 262 330 309 378 286 398 0.70 # 25003 # 26904 # -1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.354 1_11 - 918 AAA_10 PF12846.2 304 8.7e-36 115.5 0.0 1 1 3.4e-37 1.5e-35 114.8 0.0 3 294 539 825 538 832 0.93 # 5091 # 7844 # 1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.443 1_18 - 344 IstB_IS21 PF01695.12 178 0.00018 12.7 0.0 1 1 8.3e-06 0.00037 11.7 0.0 44 66 160 182 141 186 0.93 # 13067 # 14098 # 1 # ID=1_18;partial=00;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.408 1_28 - 844 Helicase_C_2 PF13307.1 167 5e-12 37.8 0.0 1 1 2.4e-13 1.1e-11 36.7 0.0 47 147 381 471 355 477 0.77 # 21199 # 23730 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.331 # # Program: hmmsearch # Version: 3.1b1 (May 2013) # Pipeline mode: SEARCH # Query file: /tmp/b85f7889-3992-4545-8702-af94d503da99 # Target file: checkm_output/bins/pm393/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm393/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/b85f7889-3992-4545-8702-af94d503da99 checkm_output/bins/pm393/genes.faa # Current dir: /mnt/data/azomer/reads-for-assembly/files/output/allcontigs/output_1512029421078392887 # Date: Thu Nov 30 10:04:40 2017 # [ok]