# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_26 - 293 HHH_5 PF14520.1 60 0.00031 12.1 0.1 1 1 4.1e-05 0.0011 10.3 0.0 9 37 184 212 174 217 0.92 # 22347 # 23225 # 1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.535 1_2 - 215 Sigma70_r4_2 PF08281.7 54 0.00013 12.6 0.0 1 1 8e-06 0.00022 11.8 0.0 10 43 139 171 138 182 0.91 # 1980 # 2624 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.451 1_2 - 215 GerE PF00196.14 58 1.1e-14 44.7 0.4 1 1 1.7e-15 2.4e-14 43.6 0.4 2 56 138 192 137 194 0.96 # 1980 # 2624 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.451 1_3 - 183 GerE PF00196.14 58 1.7e-05 15.3 1.7 1 2 0.0023 0.032 4.8 0.5 3 15 104 116 102 118 0.90 # 2875 # 3423 # -1 # ID=1_3;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.437 1_3 - 183 GerE PF00196.14 58 1.7e-05 15.3 1.7 2 2 9.1e-05 0.0013 9.3 0.0 29 47 139 157 137 159 0.91 # 2875 # 3423 # -1 # ID=1_3;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.437 1_6 - 280 GyrI-like PF06445.10 155 8.4e-07 20.2 0.0 1 1 5e-08 1.4e-06 19.5 0.0 66 153 192 277 156 279 0.81 # 4721 # 5560 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.385 1_6 - 280 HTH_AraC PF00165.18 42 9.2e-12 35.7 0.7 1 2 0.0063 0.18 3.0 0.0 3 40 15 52 13 54 0.83 # 4721 # 5560 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.385 1_6 - 280 HTH_AraC PF00165.18 42 9.2e-12 35.7 0.7 2 2 1.1e-11 3.2e-10 30.8 0.3 2 42 66 104 65 104 0.95 # 4721 # 5560 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.385 1_3 - 183 DUF1870 PF08965.5 118 0.00013 12.7 0.1 1 2 3.1e-05 0.00087 10.1 0.0 20 56 5 41 3 49 0.89 # 2875 # 3423 # -1 # ID=1_3;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.437 1_3 - 183 DUF1870 PF08965.5 118 0.00013 12.7 0.1 2 2 0.079 2.2 -0.9 0.0 43 65 59 81 56 89 0.73 # 2875 # 3423 # -1 # ID=1_3;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.437 1_26 - 293 IMS_HHH PF11798.3 32 4.3e-09 27.3 0.0 1 1 3.5e-10 9.7e-09 26.2 0.0 6 32 175 201 170 201 0.91 # 22347 # 23225 # 1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.535 1_6 - 280 HTH_18 PF12833.2 81 7.8e-19 58.8 0.9 1 1 4.4e-20 1.2e-18 58.2 0.9 5 80 30 104 26 105 0.96 # 4721 # 5560 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.385 1_22 - 539 UvrD_C_2 PF13538.1 104 9.3e-10 29.8 0.1 1 1 9.4e-11 2.6e-09 28.3 0.1 3 103 135 240 133 241 0.77 # 18874 # 20490 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.617 1_3 - 183 Trans_reg_C PF00486.23 77 1.1e-22 71.0 0.6 1 1 3.9e-24 1.1e-22 71.0 0.6 3 77 102 171 100 171 0.97 # 2875 # 3423 # -1 # ID=1_3;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.437 1_3 - 183 HTH_11 PF08279.7 55 8.4e-07 19.8 1.3 1 1 8.2e-08 2.3e-06 18.4 1.3 1 55 108 170 108 170 0.90 # 2875 # 3423 # -1 # ID=1_3;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.437 1_26 - 293 DNA_pol_lambd_f PF10391.4 52 0.00017 12.3 0.0 1 1 1.8e-05 0.00049 10.8 0.0 6 29 184 207 182 217 0.88 # 22347 # 23225 # 1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.535 # # Program: hmmsearch # Version: 3.1b1 (May 2013) # Pipeline mode: SEARCH # Query file: /tmp/4cc3219a-018e-41bd-9b89-f9176db0a4ef # Target file: checkm_output/bins/pm391/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm391/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/4cc3219a-018e-41bd-9b89-f9176db0a4ef checkm_output/bins/pm391/genes.faa # Current dir: /mnt/data/azomer/reads-for-assembly/files/output/allcontigs/output_1512029421078392887 # Date: Thu Nov 30 10:04:39 2017 # [ok]