# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_6 - 220 TIGR00091 TIGR00091 194 0.00018 11.8 0.0 1 1 1.2e-05 0.00035 10.9 0.0 11 86 44 115 37 126 0.78 # 8420 # 9079 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.394 1_18 - 322 ThiF PF00899.16 136 2e-40 129.0 0.0 1 1 1.1e-41 3.4e-40 128.2 0.0 2 132 23 153 22 155 0.98 # 15681 # 16646 # 1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.634 1_7 - 195 HTH_38 PF13936.1 44 5e-06 17.3 0.1 1 2 0.044 1.3 -0.1 0.0 6 15 17 26 15 34 0.79 # 9409 # 9993 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.540 1_7 - 195 HTH_38 PF13936.1 44 5e-06 17.3 0.1 2 2 1.8e-06 5.5e-05 14.0 0.0 4 39 151 186 148 187 0.89 # 9409 # 9993 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.540 1_18 - 322 2-Hacid_dh_C PF02826.14 178 0.00025 11.4 0.0 1 1 1.5e-05 0.00046 10.6 0.0 28 73 15 61 1 77 0.74 # 15681 # 16646 # 1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.634 1_9 - 207 MobB PF03205.9 140 2.8e-05 15.1 0.1 1 1 5.2e-06 0.00016 12.6 0.1 10 102 12 86 2 105 0.68 # 10990 # 11610 # 1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.449 1_24 - 286 MarR PF01047.17 59 0.00015 12.7 0.1 1 1 9.6e-06 0.00029 11.8 0.1 4 44 4 42 1 42 0.82 # 22632 # 23489 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.570 1_20 - 117 HTH_Tnp_4 PF13613.1 53 0.00014 12.6 0.0 1 1 7.9e-06 0.00024 11.9 0.0 15 38 43 66 42 67 0.93 # 18120 # 18470 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.407 1_17 - 253 NanE PF04131.9 192 3.9e-05 13.9 0.0 1 1 3.1e-06 9.3e-05 12.6 0.0 144 190 172 221 163 223 0.84 # 14907 # 15665 # 1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.589 1_18 - 322 NAD_binding_7 PF13241.1 103 1.7e-05 16.3 0.0 1 1 1.3e-06 3.8e-05 15.2 0.0 5 91 21 144 19 148 0.71 # 15681 # 16646 # 1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.634 1_9 - 207 CbiA PF01656.18 195 7.6e-28 88.4 1.4 1 1 5.6e-29 1.7e-27 87.3 1.4 1 143 4 124 4 170 0.74 # 10990 # 11610 # 1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.449 1_30 - 323 Rep_3 PF01051.16 222 1.8e-56 182.4 0.0 1 1 7.7e-58 2.3e-56 182.0 0.0 1 222 1 232 1 232 0.92 # 27269 # 28237 # -1 # ID=1_30;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.499 1_6 - 220 Methyltransf_26 PF13659.1 117 2.4e-08 25.3 0.0 1 1 1.2e-09 3.5e-08 24.8 0.0 3 75 52 120 50 215 0.86 # 8420 # 9079 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.394 1_9 - 207 AAA_30 PF13604.1 196 9.8e-05 13.2 0.2 1 1 6.7e-06 0.0002 12.2 0.2 26 106 10 88 2 97 0.78 # 10990 # 11610 # 1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.449 1_17 - 253 His_biosynth PF00977.16 229 5.6e-07 20.2 0.0 1 2 0.00081 0.024 5.0 0.0 98 129 10 41 7 78 0.77 # 14907 # 15665 # 1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.589 1_17 - 253 His_biosynth PF00977.16 229 5.6e-07 20.2 0.0 2 2 2.6e-06 7.8e-05 13.2 0.0 73 132 171 229 152 245 0.77 # 14907 # 15665 # 1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.589 1_12 - 36 HTH_Tnp_1 PF01527.15 76 7e-07 20.4 0.0 1 1 2.6e-08 7.9e-07 20.3 0.0 4 27 3 26 1 27 0.91 # 12467 # 12574 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.463 1_4 - 333 TIGR00464 TIGR00464 470 4e-05 13.4 2.1 1 1 3.5e-06 5.2e-05 13.1 2.1 343 466 196 320 173 324 0.86 # 4690 # 5688 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.567 1_22 - 519 TIGR00464 TIGR00464 470 0.011 5.4 9.1 1 2 5.1e-05 0.00077 9.2 1.7 341 463 252 376 235 382 0.72 # 19262 # 20818 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.510 1_22 - 519 TIGR00464 TIGR00464 470 0.011 5.4 9.1 2 2 0.038 0.57 -0.2 1.0 356 419 437 501 397 515 0.45 # 19262 # 20818 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.510 1_9 - 207 MipZ PF09140.6 261 6.5e-14 42.7 0.9 1 2 2.4e-10 7.2e-09 26.2 0.0 2 47 3 47 2 56 0.88 # 10990 # 11610 # 1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.449 1_9 - 207 MipZ PF09140.6 261 6.5e-14 42.7 0.9 2 2 5.1e-07 1.5e-05 15.3 0.3 96 141 73 118 49 150 0.84 # 10990 # 11610 # 1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.449 1_6 - 220 Methyltransf_25 PF13649.1 101 1.2e-07 23.3 0.0 1 1 6.6e-09 2e-07 22.6 0.0 2 82 54 129 53 150 0.79 # 8420 # 9079 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.394 1_9 - 207 LexA_DNA_bind PF01726.11 65 0.00022 12.1 0.0 1 1 1.6e-05 0.00047 11.0 0.0 8 34 143 169 138 175 0.91 # 10990 # 11610 # 1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.449 1_20 - 117 MerR_1 PF13411.1 69 0.0001 13.3 0.0 1 2 0.00091 0.027 5.5 0.0 1 18 26 43 26 44 0.93 # 18120 # 18470 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.407 1_20 - 117 MerR_1 PF13411.1 69 0.0001 13.3 0.0 2 2 0.00095 0.028 5.5 0.0 4 26 51 73 48 78 0.84 # 18120 # 18470 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.407 1_9 - 207 cobW PF02492.14 178 0.00015 12.5 0.1 1 2 2.8e-05 0.00083 10.0 0.0 10 38 12 41 3 48 0.86 # 10990 # 11610 # 1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.449 1_9 - 207 cobW PF02492.14 178 0.00015 12.5 0.1 2 2 0.031 0.94 0.1 0.0 114 146 115 147 71 158 0.76 # 10990 # 11610 # 1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.449 1_6 - 220 NodS PF05401.6 201 3.3e-07 21.1 0.0 1 1 1.5e-08 4.5e-07 20.6 0.0 16 146 20 160 15 169 0.75 # 8420 # 9079 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.394 1_15 - 361 Pyr_redox PF00070.22 80 0.00014 13.5 0.0 1 2 0.00014 0.0043 8.7 0.0 2 30 54 82 53 86 0.88 # 13627 # 14709 # 1 # ID=1_15;partial=00;start_type=TTG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.625 1_15 - 361 Pyr_redox PF00070.22 80 0.00014 13.5 0.0 2 2 0.019 0.57 1.9 0.0 40 58 185 203 179 209 0.84 # 13627 # 14709 # 1 # ID=1_15;partial=00;start_type=TTG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.625 1_24 - 286 HTH_1 PF00126.22 60 7.7e-22 68.1 0.2 1 1 5.3e-23 1.6e-21 67.1 0.2 1 60 3 62 3 62 0.95 # 22632 # 23489 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.570 1_20 - 117 HTH_3 PF01381.17 55 6.2e-08 23.7 0.3 1 2 0.033 0.99 0.6 0.0 10 26 26 42 23 43 0.78 # 18120 # 18470 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.407 1_20 - 117 HTH_3 PF01381.17 55 6.2e-08 23.7 0.3 2 2 8.5e-09 2.5e-07 21.7 0.2 2 49 40 86 40 91 0.92 # 18120 # 18470 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.407 1_7 - 195 HTH_23 PF13384.1 50 1.6e-06 18.9 0.1 1 1 1.1e-07 3.4e-06 17.9 0.1 5 39 155 189 151 191 0.90 # 9409 # 9993 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.540 1_9 - 207 Fer4_NifH PF00142.13 273 9.2e-08 22.7 0.0 1 1 5.2e-09 1.6e-07 22.0 0.0 8 63 10 65 3 91 0.88 # 10990 # 11610 # 1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.449 1_7 - 195 HTH_7 PF02796.10 45 2.1e-14 44.4 0.0 1 1 1.5e-15 4.6e-14 43.3 0.0 1 44 147 190 147 191 0.96 # 9409 # 9993 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.540 1_20 - 117 HTH_19 PF12844.2 64 9.5e-06 16.9 0.1 1 1 4.8e-07 1.5e-05 16.3 0.1 1 51 36 85 36 89 0.83 # 18120 # 18470 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.407 1_18 - 322 Saccharop_dh PF03435.13 386 8.6e-07 19.3 0.3 1 2 3e-07 9e-06 16.0 0.6 1 100 26 159 26 211 0.71 # 15681 # 16646 # 1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.634 1_18 - 322 Saccharop_dh PF03435.13 386 8.6e-07 19.3 0.3 2 2 0.028 0.84 -0.4 0.0 261 307 256 298 223 306 0.75 # 15681 # 16646 # 1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.634 1_7 - 195 HTH_29 PF13551.1 112 1.2e-05 16.7 0.7 1 2 0.00043 0.013 6.9 0.1 38 70 133 164 124 166 0.82 # 9409 # 9993 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.540 1_7 - 195 HTH_29 PF13551.1 112 1.2e-05 16.7 0.7 2 2 3.1e-05 0.00094 10.6 0.1 4 34 160 189 159 192 0.91 # 9409 # 9993 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.540 1_18 - 322 ApbA PF02558.11 151 0.00032 11.3 0.1 1 1 1.7e-05 0.0005 10.8 0.1 1 51 26 79 26 118 0.76 # 15681 # 16646 # 1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.634 1_9 - 207 DUF1611 PF07755.6 301 8.3e-07 19.1 0.4 1 1 4.4e-08 1.3e-06 18.4 0.4 124 200 13 90 11 105 0.87 # 10990 # 11610 # 1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.449 1_6 - 220 Methyltransf_31 PF13847.1 152 1.3e-11 35.5 0.0 1 1 7.3e-13 2.2e-11 34.8 0.0 5 106 51 152 47 166 0.89 # 8420 # 9079 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.394 1_9 - 207 TIGR01968 TIGR01968 261 9.5e-13 38.9 2.1 1 2 1.8e-09 5.5e-08 23.3 0.1 2 39 2 39 1 47 0.90 # 10990 # 11610 # 1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.449 1_9 - 207 TIGR01968 TIGR01968 261 9.5e-13 38.9 2.1 2 2 4.2e-07 1.3e-05 15.5 0.4 107 218 72 183 56 202 0.74 # 10990 # 11610 # 1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.449 1_6 - 220 Methyltransf_12 PF08242.7 99 1.3e-15 49.0 0.1 1 2 2.3e-16 7e-15 46.6 0.0 1 99 54 152 54 152 0.95 # 8420 # 9079 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.394 1_6 - 220 Methyltransf_12 PF08242.7 99 1.3e-15 49.0 0.1 2 2 0.081 2.4 -0.0 0.0 49 70 181 202 161 210 0.76 # 8420 # 9079 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.394 1_7 - 195 HTH_28 PF13518.1 52 2.1e-06 19.0 0.1 1 1 1.5e-07 4.6e-06 17.9 0.1 1 34 156 189 156 192 0.89 # 9409 # 9993 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.540 1_17 - 253 ThiG PF05690.9 247 2.9e-106 345.2 0.0 1 1 1.1e-107 3.2e-106 345.0 0.0 3 247 3 244 1 244 0.98 # 14907 # 15665 # 1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.589 1_18 - 322 Shikimate_DH PF01488.15 135 4.1e-05 14.9 0.2 1 1 2.4e-06 7.3e-05 14.1 0.2 7 36 18 47 12 53 0.87 # 15681 # 16646 # 1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.634 1_24 - 286 HTH_30 PF13556.1 59 6.6e-06 17.0 0.1 1 1 4.4e-07 1.3e-05 16.0 0.1 10 48 13 51 5 58 0.82 # 22632 # 23489 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.570 1_6 - 220 TIGR03533 TIGR03533 284 0.0001 12.6 0.0 1 1 5.8e-06 0.00017 11.8 0.0 113 191 41 117 36 121 0.76 # 8420 # 9079 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.394 1_6 - 220 TIGR03534 TIGR03534 253 2.8e-06 17.8 0.0 1 1 1.5e-07 4.6e-06 17.1 0.0 81 159 42 118 35 120 0.83 # 8420 # 9079 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.394 1_20 - 117 HTH_31 PF13560.1 64 2.1e-07 22.3 0.1 1 1 1.1e-08 3.3e-07 21.7 0.1 4 55 37 86 27 93 0.88 # 18120 # 18470 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.407 1_17 - 253 PcrB PF01884.12 231 3.7e-06 17.5 0.0 1 2 0.00068 0.02 5.3 0.0 134 164 68 96 60 113 0.79 # 14907 # 15665 # 1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.589 1_17 - 253 PcrB PF01884.12 231 3.7e-06 17.5 0.0 2 2 2.1e-05 0.00062 10.2 0.0 162 219 152 209 141 221 0.84 # 14907 # 15665 # 1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.589 1_9 - 207 AAA_17 PF13207.1 121 0.0002 13.4 0.0 1 1 1.1e-05 0.00033 12.7 0.0 9 80 12 86 11 156 0.69 # 10990 # 11610 # 1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.449 1_15 - 361 FAD_binding_2 PF00890.19 417 4.5e-06 16.9 0.2 1 1 2.9e-07 8.7e-06 15.9 0.1 4 49 56 100 55 147 0.91 # 13627 # 14709 # 1 # ID=1_15;partial=00;start_type=TTG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.625 1_9 - 207 VirC1 PF07015.6 231 5.7e-15 46.2 0.2 1 1 3.5e-16 1.1e-14 45.3 0.2 1 129 1 121 1 157 0.81 # 10990 # 11610 # 1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.449 1_7 - 195 CENP-B_N PF04218.8 53 5.5e-05 13.8 0.0 1 1 4.6e-06 0.00014 12.6 0.0 11 42 156 187 151 191 0.89 # 9409 # 9993 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.540 1_9 - 207 ArgK PF03308.11 267 3.5e-05 13.8 0.0 1 1 2.7e-06 8.1e-05 12.6 0.0 39 72 12 45 5 54 0.89 # 10990 # 11610 # 1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.449 1_16 - 66 ThiS PF02597.15 77 1.8e-12 38.8 0.0 1 1 7.1e-14 2.1e-12 38.6 0.0 17 77 10 65 3 65 0.90 # 14706 # 14903 # 1 # ID=1_16;partial=00;start_type=TTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.551 1_6 - 220 MTS PF05175.9 170 6.5e-13 39.6 0.2 1 1 5.5e-14 1.6e-12 38.3 0.1 21 136 39 152 36 158 0.88 # 8420 # 9079 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.394 1_6 - 220 Methyltransf_23 PF13489.1 161 9.7e-12 36.1 0.0 1 1 4.2e-13 1.3e-11 35.7 0.0 15 152 43 196 29 203 0.84 # 8420 # 9079 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.394 1_9 - 207 ATP_bind_1 PF03029.12 238 6.9e-06 16.9 0.1 1 1 3.7e-07 1.1e-05 16.2 0.1 6 44 12 50 10 74 0.84 # 10990 # 11610 # 1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.449 1_24 - 286 MarR_2 PF12802.2 62 4.2e-05 14.4 0.1 1 1 2.9e-06 8.8e-05 13.4 0.1 3 47 1 41 1 43 0.95 # 22632 # 23489 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.570 1_15 - 361 DAO PF01266.19 358 2.6e-31 99.9 2.1 1 1 8.6e-31 2.6e-29 93.3 2.1 4 356 56 351 53 354 0.84 # 13627 # 14709 # 1 # ID=1_15;partial=00;start_type=TTG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.625 1_22 - 519 Seryl_tRNA_N PF02403.17 108 0.076 4.3 15.4 1 2 0.0011 0.033 5.5 0.4 36 106 243 314 218 316 0.72 # 19262 # 20818 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.510 1_22 - 519 Seryl_tRNA_N PF02403.17 108 0.076 4.3 15.4 2 2 0.00048 0.014 6.7 2.0 26 93 436 507 414 517 0.81 # 19262 # 20818 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.510 1_9 - 207 AAA_10 PF12846.2 304 2e-05 15.3 0.0 1 1 7.9e-07 2.4e-05 15.1 0.0 11 47 12 50 10 171 0.91 # 10990 # 11610 # 1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.449 1_24 - 286 HTH_20 PF12840.2 61 9.3e-05 13.5 0.1 1 1 7e-06 0.00021 12.3 0.1 12 50 5 41 4 44 0.93 # 22632 # 23489 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.570 1_6 - 220 Methyltransf_18 PF12847.2 112 3.7e-11 34.9 0.0 1 1 2.8e-12 8.4e-11 33.7 0.0 3 107 51 152 50 157 0.86 # 8420 # 9079 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.394 1_6 - 220 Methyltransf_11 PF08241.7 95 1.7e-13 42.1 0.0 1 1 1.1e-14 3.4e-13 41.2 0.0 1 93 54 152 54 153 0.91 # 8420 # 9079 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.394 1_9 - 207 ArsA_ATPase PF02374.10 305 1.9e-07 21.6 0.2 1 1 1e-08 3.1e-07 20.9 0.1 5 45 6 46 1 84 0.91 # 10990 # 11610 # 1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.449 1_9 - 207 AAA_31 PF13614.1 157 1.8e-08 25.7 0.2 1 2 1.2e-07 3.7e-06 18.2 0.0 1 39 2 40 2 46 0.94 # 10990 # 11610 # 1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.449 1_9 - 207 AAA_31 PF13614.1 157 1.8e-08 25.7 0.2 2 2 0.0011 0.032 5.4 0.0 115 152 74 109 58 114 0.83 # 10990 # 11610 # 1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.449 1_16 - 66 TGS PF02824.16 60 0.00029 11.9 0.0 1 1 1.5e-05 0.00045 11.3 0.0 28 59 24 59 10 60 0.75 # 14706 # 14903 # 1 # ID=1_16;partial=00;start_type=TTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.551 1_6 - 220 Methyltransf_9 PF08003.6 315 2.2e-05 14.4 0.0 1 1 8.2e-07 2.5e-05 14.3 0.0 95 174 30 104 10 167 0.71 # 8420 # 9079 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.394 # # Program: hmmsearch # Version: 3.1b1 (May 2013) # Pipeline mode: SEARCH # Query file: /tmp/65fffe22-22dc-41a1-b3cd-3a69d373c40a # Target file: checkm_output/bins/pm39/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm39/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/65fffe22-22dc-41a1-b3cd-3a69d373c40a checkm_output/bins/pm39/genes.faa # Current dir: /mnt/data/azomer/reads-for-assembly/files/output/allcontigs/output_1512029421078392887 # Date: Thu Nov 30 10:04:29 2017 # [ok]