# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_25 - 323 KaiC PF06745.8 227 0.00014 13.4 0.1 1 1 4.3e-06 0.00032 12.3 0.1 12 43 33 63 27 149 0.80 # 18389 # 19357 # -1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.542 1_27 - 187 HTH_IclR PF09339.5 52 9.7e-06 17.6 0.0 1 1 7.7e-07 2.8e-05 16.2 0.0 18 40 158 180 144 181 0.92 # 20995 # 21555 # -1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.561 1_24 - 346 HTH_IclR PF09339.5 52 7.6e-05 14.8 2.7 1 2 0.00024 0.0087 8.2 0.0 16 37 38 59 27 68 0.84 # 17163 # 18200 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.518 1_24 - 346 HTH_IclR PF09339.5 52 7.6e-05 14.8 2.7 2 2 0.0023 0.083 5.1 0.5 30 40 127 137 125 138 0.90 # 17163 # 18200 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.518 1_25 - 323 ABC_tran PF00005.22 137 5.2e-06 19.3 0.1 1 1 1.4e-07 1e-05 18.4 0.1 2 90 31 120 30 159 0.75 # 18389 # 19357 # -1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.542 1_27 - 187 HTH_22 PF13309.1 64 1e-05 17.8 0.1 1 1 4.5e-06 0.00017 13.9 0.0 45 63 161 179 158 180 0.87 # 20995 # 21555 # -1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.561 1_22 - 298 HTH_22 PF13309.1 64 0.00058 12.1 0.2 1 2 0.0045 0.16 4.3 0.0 24 48 6 30 4 33 0.91 # 15662 # 16555 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.405 1_22 - 298 HTH_22 PF13309.1 64 0.00058 12.1 0.2 2 2 0.003 0.11 4.8 0.1 1 33 104 136 104 140 0.92 # 15662 # 16555 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.405 1_54 - 72 DUF463 PF04317.7 443 0.00068 10.7 0.0 1 1 1.1e-05 0.00078 10.5 0.0 4 30 41 67 38 71 0.88 # 42977 # 43192 # 1 # ID=1_54;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.394 1_37 - 425 Cdd1 PF11731.3 93 0.00024 13.5 0.0 1 1 8.1e-06 0.00059 12.3 0.0 10 47 178 215 141 227 0.85 # 30315 # 31589 # -1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.540 1_26 - 555 rve_3 PF13683.1 67 0.00016 13.7 1.3 1 1 7.8e-06 0.00057 11.9 1.3 12 58 282 331 278 339 0.84 # 19347 # 21011 # -1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.556 1_24 - 346 HTH_38 PF13936.1 44 3.2e-07 22.4 0.8 1 1 5.7e-08 2.1e-06 19.7 0.0 10 41 30 61 26 62 0.89 # 17163 # 18200 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.518 1_27 - 187 HTH_38 PF13936.1 44 6e-05 15.1 0.1 1 1 6.3e-06 0.00023 13.2 0.0 13 41 150 179 147 181 0.88 # 20995 # 21555 # -1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.561 1_25 - 323 MobB PF03205.9 140 0.00023 13.3 0.1 1 1 1.1e-05 0.00082 11.6 0.0 2 31 42 70 41 86 0.78 # 18389 # 19357 # -1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.542 1_26 - 555 HTH_Tnp_4 PF13613.1 53 0.00024 13.1 0.4 1 1 1.1e-05 0.00081 11.4 0.0 26 44 38 56 35 57 0.90 # 19347 # 21011 # -1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.556 1_30 - 372 DUF3584 PF12128.3 1201 0.032 3.9 61.1 1 1 0.0042 0.31 0.6 61.0 261 533 79 352 68 366 0.56 # 23903 # 25018 # 1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.584 1_27 - 187 HTH_8 PF02954.14 42 0.00016 13.7 0.1 1 1 5.9e-06 0.00043 12.3 0.1 24 42 164 182 161 182 0.89 # 20995 # 21555 # -1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.561 1_27 - 187 TetR_N PF00440.18 47 0.00032 12.8 0.9 1 2 0.027 2 0.7 0.0 11 21 3 13 1 13 0.83 # 20995 # 21555 # -1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.561 1_27 - 187 TetR_N PF00440.18 47 0.00032 12.8 0.9 2 2 3.7e-05 0.0027 9.9 0.2 16 35 158 177 149 178 0.88 # 20995 # 21555 # -1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.561 1_25 - 323 AAA_19 PF13245.1 76 4.7e-05 15.6 0.2 1 1 6.6e-06 0.00024 13.3 0.1 6 37 36 67 32 119 0.75 # 18389 # 19357 # -1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.542 1_54 - 72 AAA_19 PF13245.1 76 0.00012 14.3 0.0 1 1 3.8e-06 0.00014 14.1 0.0 15 42 42 68 29 71 0.79 # 42977 # 43192 # 1 # ID=1_54;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.394 1_35 - 402 CbiA PF01656.18 195 1.7e-18 59.2 0.0 1 1 4.6e-20 3.4e-18 58.2 0.0 1 141 111 291 111 328 0.75 # 28054 # 29259 # 1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.470 1_25 - 323 PRK PF00485.13 194 0.00025 13.1 0.0 1 1 7e-06 0.00051 12.1 0.0 1 38 42 81 42 132 0.66 # 18389 # 19357 # -1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.542 1_36 - 325 Sigma70_r4_2 PF08281.7 54 0.00038 12.4 0.0 1 1 1.6e-05 0.0012 10.8 0.0 24 50 158 184 153 185 0.89 # 29259 # 30233 # 1 # ID=1_36;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.452 1_2 - 330 Rep_3 PF01051.16 222 6.1e-33 106.7 0.2 1 1 1.2e-34 9e-33 106.1 0.2 3 214 14 269 13 275 0.91 # 877 # 1866 # -1 # ID=1_2;partial=00;start_type=TTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.522 1_26 - 555 rve PF00665.21 120 9.6e-13 40.8 0.0 1 1 7.2e-14 2.6e-12 39.4 0.0 2 118 157 298 156 300 0.89 # 19347 # 21011 # -1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.556 1_24 - 346 rve PF00665.21 120 1.8e-10 33.4 0.0 1 1 1.3e-11 4.6e-10 32.2 0.0 18 118 206 305 190 307 0.91 # 17163 # 18200 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.518 1_24 - 346 Terminase_5 PF06056.7 58 0.00011 14.2 0.0 1 1 6.1e-06 0.00045 12.3 0.0 3 35 30 62 28 85 0.86 # 17163 # 18200 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.518 1_25 - 323 AAA_30 PF13604.1 196 0.00012 14.2 0.3 1 1 4.9e-06 0.00036 12.6 0.3 15 128 38 164 27 170 0.55 # 18389 # 19357 # -1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.542 1_36 - 325 CPSase_L_D3 PF02787.14 123 0.00024 13.3 0.5 1 1 1.1e-05 0.00078 11.7 0.1 50 98 135 186 128 191 0.79 # 29259 # 30233 # 1 # ID=1_36;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.452 1_67 - 117 GerE PF00196.14 58 4e-13 41.0 0.0 1 1 7.9e-15 5.8e-13 40.5 0.0 4 54 32 82 30 85 0.96 # 51774 # 52124 # -1 # ID=1_67;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.584 1_24 - 346 DDE_3 PF13358.1 146 9.8e-29 92.4 0.0 1 1 2.6e-30 1.9e-28 91.5 0.0 2 138 177 310 176 317 0.96 # 17163 # 18200 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.518 1_35 - 402 MipZ PF09140.6 261 4.1e-06 18.4 0.0 1 2 0.0025 0.18 3.2 0.0 3 50 111 163 109 201 0.73 # 28054 # 29259 # 1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.470 1_35 - 402 MipZ PF09140.6 261 4.1e-06 18.4 0.0 2 2 2.8e-06 0.0002 12.9 0.0 87 136 233 282 220 305 0.87 # 28054 # 29259 # 1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.470 1_52 - 474 DivIC PF04977.10 80 0.0018 10.2 6.6 1 2 1.7e-05 0.0012 10.8 3.5 17 66 75 123 71 124 0.91 # 40983 # 42404 # 1 # ID=1_52;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.580 1_52 - 474 DivIC PF04977.10 80 0.0018 10.2 6.6 2 2 0.055 4 -0.5 0.1 49 64 406 421 401 426 0.81 # 40983 # 42404 # 1 # ID=1_52;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.580 1_30 - 372 DUF2316 PF10078.4 89 0.0086 8.6 9.2 1 2 0.00014 0.01 8.4 2.5 5 45 198 238 193 249 0.88 # 23903 # 25018 # 1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.584 1_30 - 372 DUF2316 PF10078.4 89 0.0086 8.6 9.2 2 2 0.0082 0.6 2.7 0.6 5 42 251 288 247 301 0.86 # 23903 # 25018 # 1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.584 1_25 - 323 AAA PF00004.24 132 1.1e-06 21.3 0.0 1 1 3.5e-08 2.6e-06 20.2 0.0 3 97 45 152 43 181 0.68 # 18389 # 19357 # -1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.542 1_36 - 325 HTH_37 PF13744.1 80 8.5e-05 14.8 1.3 1 2 0.0091 0.66 2.4 0.1 27 55 9 37 6 43 0.82 # 29259 # 30233 # 1 # ID=1_36;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.452 1_36 - 325 HTH_37 PF13744.1 80 8.5e-05 14.8 1.3 2 2 3.8e-05 0.0028 10.0 0.1 27 53 156 182 153 186 0.90 # 29259 # 30233 # 1 # ID=1_36;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.452 1_25 - 323 TIGR00064 TIGR00064 279 5.2e-05 14.7 0.2 1 1 1.4e-06 0.0001 13.7 0.0 72 111 33 72 4 76 0.73 # 18389 # 19357 # -1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.542 1_54 - 72 cobW PF02492.14 178 0.00011 14.2 0.0 1 1 1.9e-06 0.00014 13.8 0.0 5 25 42 66 39 71 0.77 # 42977 # 43192 # 1 # ID=1_54;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.394 1_25 - 323 AAA_16 PF13191.1 185 2.6e-11 36.3 1.2 1 1 9.1e-12 3.3e-10 32.7 0.3 22 179 38 153 24 162 0.76 # 18389 # 19357 # -1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.542 1_54 - 72 AAA_16 PF13191.1 185 0.00021 13.7 0.1 1 1 6.3e-06 0.00023 13.6 0.1 26 51 39 64 27 71 0.85 # 42977 # 43192 # 1 # ID=1_54;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.394 1_25 - 323 AAA_22 PF13401.1 131 3.6e-16 52.0 0.3 1 1 2.2e-17 8.2e-16 50.8 0.3 3 129 39 170 36 172 0.77 # 18389 # 19357 # -1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.542 1_54 - 72 AAA_22 PF13401.1 131 0.00064 12.4 0.0 1 1 3.4e-05 0.0012 11.4 0.0 7 31 40 64 31 69 0.84 # 42977 # 43192 # 1 # ID=1_54;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.394 1_62 - 249 HTH_AraC PF00165.18 42 3.8e-17 54.1 3.8 1 2 8.9e-09 6.5e-07 21.6 0.0 4 39 154 188 151 191 0.87 # 48184 # 48930 # -1 # ID=1_62;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.473 1_62 - 249 HTH_AraC PF00165.18 42 3.8e-17 54.1 3.8 2 2 1.7e-12 1.2e-10 33.4 0.3 11 39 209 238 207 240 0.94 # 48184 # 48930 # -1 # ID=1_62;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.473 1_22 - 298 HTH_1 PF00126.22 60 2.9e-16 51.5 0.0 1 1 1.2e-17 8.5e-16 50.0 0.0 2 60 7 65 6 65 0.96 # 15662 # 16555 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.405 1_24 - 346 LZ_Tnp_IS481 PF13011.1 85 3.4e-06 19.8 0.2 1 1 1.1e-07 8.1e-06 18.6 0.2 12 69 27 82 15 89 0.91 # 17163 # 18200 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.518 1_24 - 346 HTH_32 PF13565.1 77 2.7e-12 39.9 2.9 1 2 0.0032 0.12 5.8 0.0 32 77 24 61 8 61 0.81 # 17163 # 18200 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.518 1_24 - 346 HTH_32 PF13565.1 77 2.7e-12 39.9 2.9 2 2 2.9e-13 1.1e-11 38.0 0.3 1 77 56 136 56 136 0.82 # 17163 # 18200 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.518 1_26 - 555 HTH_32 PF13565.1 77 8.3e-05 15.9 8.9 1 3 0.0033 0.12 5.7 0.1 33 77 11 52 2 52 0.67 # 19347 # 21011 # -1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.556 1_26 - 555 HTH_32 PF13565.1 77 8.3e-05 15.9 8.9 2 3 0.0011 0.041 7.2 0.1 21 63 61 113 54 120 0.69 # 19347 # 21011 # -1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.556 1_26 - 555 HTH_32 PF13565.1 77 8.3e-05 15.9 8.9 3 3 0.0055 0.2 5.0 0.1 1 18 131 148 131 160 0.79 # 19347 # 21011 # -1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.556 1_24 - 346 HTH_23 PF13384.1 50 1.3e-11 36.4 2.8 1 1 1.6e-12 2.9e-11 35.2 0.0 3 50 26 73 24 73 0.94 # 17163 # 18200 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.518 1_39 - 584 HTH_23 PF13384.1 50 6.8e-06 18.2 0.0 1 1 1.3e-06 2.4e-05 16.5 0.0 13 45 70 99 67 104 0.88 # 32282 # 34033 # 1 # ID=1_39;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.595 1_27 - 187 HTH_23 PF13384.1 50 9e-06 17.8 0.0 1 1 1.3e-06 2.3e-05 16.5 0.0 12 42 152 183 148 186 0.81 # 20995 # 21555 # -1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.561 1_26 - 555 HTH_23 PF13384.1 50 0.0026 10.0 0.1 1 2 0.00014 0.0026 10.0 0.1 20 39 34 53 29 57 0.88 # 19347 # 21011 # -1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.556 1_26 - 555 HTH_23 PF13384.1 50 0.0026 10.0 0.1 2 2 0.0023 0.042 6.1 0.5 32 42 130 140 128 147 0.84 # 19347 # 21011 # -1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.556 1_27 - 187 HTH_7 PF02796.10 45 5.5e-10 31.5 0.1 1 1 4.8e-11 1.2e-09 30.4 0.1 1 42 140 179 140 181 0.93 # 20995 # 21555 # -1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.561 1_26 - 555 HTH_7 PF02796.10 45 1.9e-05 16.9 0.2 1 1 3e-06 7.4e-05 15.1 0.2 23 43 33 53 30 54 0.93 # 19347 # 21011 # -1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.556 1_24 - 346 HTH_7 PF02796.10 45 0.00018 13.9 0.2 1 2 0.00013 0.0032 9.8 0.0 14 38 33 57 21 61 0.76 # 17163 # 18200 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.518 1_24 - 346 HTH_7 PF02796.10 45 0.00018 13.9 0.2 2 2 0.066 1.6 1.2 0.1 35 43 129 137 119 139 0.79 # 17163 # 18200 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.518 1_25 - 323 NB-ARC PF00931.17 287 0.00029 12.2 0.3 1 1 5.9e-06 0.00043 11.6 0.3 8 104 29 126 22 144 0.74 # 18389 # 19357 # -1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.542 1_24 - 346 HTH_29 PF13551.1 112 1.3e-18 59.7 0.1 1 1 1.4e-19 3.3e-18 58.4 0.1 1 111 30 139 30 140 0.92 # 17163 # 18200 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.518 1_26 - 555 HTH_29 PF13551.1 112 5.2e-06 19.1 0.5 1 2 3.4e-05 0.00083 12.0 0.1 14 91 33 109 25 121 0.65 # 19347 # 21011 # -1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.556 1_26 - 555 HTH_29 PF13551.1 112 5.2e-06 19.1 0.5 2 2 0.011 0.27 3.9 0.0 25 44 128 147 125 155 0.80 # 19347 # 21011 # -1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.556 1_27 - 187 HTH_29 PF13551.1 112 1e-05 18.2 1.2 1 2 0.067 1.6 1.4 0.1 32 62 120 149 104 156 0.71 # 20995 # 21555 # -1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.561 1_27 - 187 HTH_29 PF13551.1 112 1e-05 18.2 1.2 2 2 5.5e-06 0.00014 14.5 0.0 10 38 157 184 152 185 0.90 # 20995 # 21555 # -1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.561 1_25 - 323 Arch_ATPase PF01637.13 234 2.7e-05 16.4 0.2 1 1 8.6e-07 6.3e-05 15.2 0.2 8 135 30 142 27 164 0.68 # 18389 # 19357 # -1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.542 1_25 - 323 AAA_5 PF07728.9 139 5.9e-05 15.3 0.1 1 1 7e-06 0.00051 12.2 0.2 5 90 46 149 43 152 0.85 # 18389 # 19357 # -1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.542 1_25 - 323 ResIII PF04851.10 184 7.1e-06 18.4 0.2 1 2 1.7e-05 0.0013 11.1 0.3 29 101 44 110 20 121 0.72 # 18389 # 19357 # -1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.542 1_25 - 323 ResIII PF04851.10 184 7.1e-06 18.4 0.2 2 2 0.00058 0.042 6.1 0.0 131 162 109 140 96 153 0.63 # 18389 # 19357 # -1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.542 1_25 - 323 TrwB_AAD_bind PF10412.4 386 0.0001 13.4 0.5 1 3 1.7e-05 0.0012 9.9 0.0 14 44 39 69 35 76 0.83 # 18389 # 19357 # -1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.542 1_25 - 323 TrwB_AAD_bind PF10412.4 386 0.0001 13.4 0.5 2 3 0.021 1.5 -0.3 0.0 234 275 115 158 112 169 0.78 # 18389 # 19357 # -1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.542 1_25 - 323 TrwB_AAD_bind PF10412.4 386 0.0001 13.4 0.5 3 3 0.037 2.7 -1.1 0.0 128 182 251 306 240 311 0.71 # 18389 # 19357 # -1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.542 1_25 - 323 AAA_18 PF13238.1 129 6.7e-05 15.7 0.0 1 1 1.7e-06 0.00012 14.8 0.0 1 23 43 90 43 138 0.67 # 18389 # 19357 # -1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.542 1_37 - 425 IMS_HHH PF11798.3 32 2.4e-08 26.2 0.1 1 1 7.8e-10 5.7e-08 25.0 0.1 5 32 174 201 169 201 0.89 # 30315 # 31589 # -1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.540 1_31 - 170 TIGR01406 TIGR01406 231 0.00024 12.9 0.0 1 1 5e-06 0.00037 12.3 0.0 3 59 106 156 105 159 0.81 # 25011 # 25520 # 1 # ID=1_31;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.594 1_25 - 323 DUF87 PF01935.12 229 0.00043 12.6 0.2 1 3 5.2e-05 0.0038 9.5 0.0 26 52 43 69 40 73 0.85 # 18389 # 19357 # -1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.542 1_25 - 323 DUF87 PF01935.12 229 0.00043 12.6 0.2 2 3 0.083 6 -1.0 0.0 135 194 79 139 68 151 0.68 # 18389 # 19357 # -1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.542 1_25 - 323 DUF87 PF01935.12 229 0.00043 12.6 0.2 3 3 0.067 4.9 -0.7 0.0 121 195 198 299 171 308 0.59 # 18389 # 19357 # -1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.542 1_24 - 346 HTH_28 PF13518.1 52 6.9e-10 31.3 0.1 1 1 2.1e-10 5.2e-09 28.5 0.0 1 50 29 79 29 82 0.91 # 17163 # 18200 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.518 1_27 - 187 HTH_28 PF13518.1 52 1.2e-06 20.9 1.1 1 1 7.1e-08 1.7e-06 20.4 0.1 4 38 149 184 148 185 0.92 # 20995 # 21555 # -1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.561 1_26 - 555 HTH_28 PF13518.1 52 0.0013 11.2 0.0 1 2 5.4e-05 0.0013 11.2 0.0 15 35 34 54 32 64 0.90 # 19347 # 21011 # -1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.556 1_26 - 555 HTH_28 PF13518.1 52 0.0013 11.2 0.0 2 2 0.037 0.9 2.2 0.4 26 37 129 140 125 145 0.87 # 19347 # 21011 # -1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.556 1_25 - 323 TIGR00041 TIGR00041 196 0.00024 13.0 0.0 1 1 5.7e-06 0.00042 12.2 0.0 2 54 38 96 37 122 0.74 # 18389 # 19357 # -1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.542 1_36 - 325 HTH_24 PF13412.1 48 1.4e-05 16.9 0.2 1 1 1.3e-06 9.2e-05 14.3 0.0 13 39 157 182 153 184 0.84 # 29259 # 30233 # 1 # ID=1_36;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.452 1_62 - 249 HTH_18 PF12833.2 81 6.3e-16 50.8 0.2 1 1 1.9e-17 1.4e-15 49.7 0.0 1 79 164 240 164 241 0.96 # 48184 # 48930 # -1 # ID=1_62;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.473 1_24 - 346 HTH_33 PF13592.1 60 1e-09 30.3 0.7 1 1 6.2e-11 4.5e-09 28.3 0.3 3 50 108 155 107 157 0.94 # 17163 # 18200 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.518 1_25 - 323 DUF2075 PF09848.4 352 1.3e-06 20.0 0.1 1 1 5.2e-08 1.9e-06 19.5 0.1 2 97 41 138 40 165 0.71 # 18389 # 19357 # -1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.542 1_54 - 72 DUF2075 PF09848.4 352 1.7e-05 16.3 0.0 1 1 5.4e-07 2e-05 16.1 0.0 4 30 40 66 37 71 0.78 # 42977 # 43192 # 1 # ID=1_54;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.394 1_14 - 117 HTH_OrfB_IS605 PF12323.3 46 6e-19 59.7 0.0 1 1 1.3e-20 9.5e-19 59.0 0.0 1 45 1 45 1 46 0.98 # 9549 # 9899 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.462 1_25 - 323 T2SE PF00437.15 272 1.9e-06 19.3 0.7 1 1 1.3e-07 9.6e-06 17.1 0.7 110 161 22 72 6 137 0.81 # 18389 # 19357 # -1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.542 1_25 - 323 NACHT PF05729.7 166 0.00035 12.7 0.2 1 1 1.1e-05 0.00083 11.5 0.2 1 28 41 68 41 140 0.77 # 18389 # 19357 # -1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.542 1_25 - 323 UPF0079 PF02367.12 123 8.5e-05 14.7 0.0 1 1 2.2e-06 0.00016 13.8 0.0 3 45 28 70 26 114 0.84 # 18389 # 19357 # -1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.542 1_25 - 323 AAA_17 PF13207.1 121 0.00011 15.5 0.1 1 1 3.4e-06 0.00025 14.4 0.0 1 40 42 89 42 186 0.63 # 18389 # 19357 # -1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.542 1_25 - 323 TIGR02211 TIGR02211 221 0.00033 12.3 0.0 1 1 7.3e-06 0.00054 11.7 0.0 11 51 20 60 12 86 0.88 # 18389 # 19357 # -1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.542 1_54 - 72 Viral_helicase1 PF01443.13 234 0.00047 12.1 0.1 1 1 8.5e-06 0.00062 11.7 0.1 3 29 42 66 40 70 0.83 # 42977 # 43192 # 1 # ID=1_54;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.394 1_25 - 323 AAA_14 PF13173.1 128 3e-06 19.6 0.0 1 1 1.7e-07 1.3e-05 17.6 0.0 2 96 40 164 39 193 0.62 # 18389 # 19357 # -1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.542 1_24 - 346 HTH_Tnp_ISL3 PF13542.1 52 0.00022 12.9 0.4 1 1 2.3e-05 0.00083 11.0 0.4 18 49 30 62 26 62 0.79 # 17163 # 18200 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.518 1_26 - 555 HTH_Tnp_ISL3 PF13542.1 52 0.0003 12.5 0.0 1 1 2.7e-05 0.00097 10.8 0.0 30 49 34 53 32 55 0.90 # 19347 # 21011 # -1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.556 1_25 - 323 AAA_33 PF13671.1 143 0.00012 14.5 0.0 1 1 3.7e-06 0.00027 13.3 0.0 1 45 42 100 42 132 0.60 # 18389 # 19357 # -1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.542 1_54 - 72 ArgK PF03308.11 267 3.7e-05 15.0 0.0 1 1 5.2e-07 3.8e-05 15.0 0.0 28 59 36 67 17 70 0.83 # 42977 # 43192 # 1 # ID=1_54;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.394 1_24 - 346 DUF1836 PF08876.6 105 0.00035 12.8 0.0 1 1 1.4e-05 0.001 11.4 0.0 47 89 13 55 10 64 0.86 # 17163 # 18200 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.518 1_30 - 372 TIGR00422 TIGR00422 863 0.015 5.3 17.2 1 1 0.00031 0.023 4.7 17.0 719 856 133 270 70 276 0.82 # 23903 # 25018 # 1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.584 1_24 - 346 HTH_17 PF12728.2 51 9.4e-05 15.2 0.3 1 2 4.3e-05 0.0031 10.3 0.0 2 45 41 90 40 92 0.87 # 17163 # 18200 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.518 1_24 - 346 HTH_17 PF12728.2 51 9.4e-05 15.2 0.3 2 2 0.034 2.5 1.0 0.0 13 25 127 139 122 147 0.86 # 17163 # 18200 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.518 1_1 - 112 BOF PF04076.8 103 3e-44 141.6 0.7 1 1 4.8e-46 3.5e-44 141.4 0.7 2 102 8 108 7 109 0.98 # 1 # 336 # 1 # ID=1_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.488 1_25 - 323 PIF1 PF05970.9 364 2.1e-05 16.0 0.0 1 1 6.3e-07 4.6e-05 14.9 0.0 7 127 27 149 23 167 0.68 # 18389 # 19357 # -1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.542 1_27 - 187 TrmB PF01978.14 68 6.6e-05 15.1 0.0 1 1 1.8e-06 0.00013 14.1 0.0 21 45 157 181 148 184 0.88 # 20995 # 21555 # -1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.561 1_31 - 170 RNase_T PF00929.19 164 3.1e-07 23.3 0.0 1 1 6.3e-09 4.6e-07 22.7 0.0 1 55 106 152 106 158 0.89 # 25011 # 25520 # 1 # ID=1_31;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.594 1_25 - 323 AAA_10 PF12846.2 304 7.4e-07 21.3 0.1 1 3 8.4e-06 0.00031 12.7 0.0 3 34 42 73 40 106 0.73 # 18389 # 19357 # -1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.542 1_25 - 323 AAA_10 PF12846.2 304 7.4e-07 21.3 0.1 2 3 0.0013 0.047 5.5 0.0 216 245 120 150 79 207 0.83 # 18389 # 19357 # -1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.542 1_25 - 323 AAA_10 PF12846.2 304 7.4e-07 21.3 0.1 3 3 0.072 2.6 -0.3 0.0 106 170 239 301 179 314 0.57 # 18389 # 19357 # -1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.542 1_54 - 72 AAA_10 PF12846.2 304 0.0003 12.7 0.1 1 2 0.0013 0.046 5.5 0.0 272 285 15 32 2 34 0.75 # 42977 # 43192 # 1 # ID=1_54;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.394 1_54 - 72 AAA_10 PF12846.2 304 0.0003 12.7 0.1 2 2 0.0011 0.039 5.8 0.0 2 29 38 65 37 69 0.87 # 42977 # 43192 # 1 # ID=1_54;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.394 1_2 - 330 HTH_20 PF12840.2 61 0.00025 13.4 0.0 1 2 0.0028 0.21 4.0 0.0 24 46 106 128 101 129 0.89 # 877 # 1866 # -1 # ID=1_2;partial=00;start_type=TTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.522 1_2 - 330 HTH_20 PF12840.2 61 0.00025 13.4 0.0 2 2 0.00037 0.027 6.8 0.0 19 58 217 263 190 266 0.79 # 877 # 1866 # -1 # ID=1_2;partial=00;start_type=TTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.522 1_35 - 402 AAA_31 PF13614.1 157 0.00033 13.1 0.1 1 2 0.071 5.2 -0.6 0.0 12 61 120 174 110 209 0.55 # 28054 # 29259 # 1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.470 1_35 - 402 AAA_31 PF13614.1 157 0.00033 13.1 0.1 2 2 3.1e-05 0.0023 10.3 0.0 108 147 235 273 231 279 0.86 # 28054 # 29259 # 1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.470 1_37 - 425 DNA_pol_lambd_f PF10391.4 52 0.00022 13.2 0.0 1 1 1e-05 0.00075 11.5 0.0 5 29 183 207 179 218 0.85 # 30315 # 31589 # -1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.540 1_54 - 72 AAA_11 PF13086.1 236 0.00018 13.5 0.0 1 1 2.5e-06 0.00018 13.5 0.0 11 43 32 63 17 71 0.78 # 42977 # 43192 # 1 # ID=1_54;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.394 1_34 - 314 Glyco_trans_4_3 PF12000.3 171 1.5e-06 20.3 0.1 1 2 0.00013 0.0095 8.0 0.0 14 84 112 182 97 188 0.77 # 26698 # 27639 # -1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.545 1_34 - 314 Glyco_trans_4_3 PF12000.3 171 1.5e-06 20.3 0.1 2 2 3.4e-05 0.0025 9.9 0.0 19 65 209 256 201 261 0.90 # 26698 # 27639 # -1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.545 # # Program: hmmsearch # Version: 3.1b1 (May 2013) # Pipeline mode: SEARCH # Query file: /tmp/112f34dc-51ac-448b-9d5c-565de00e3b22 # Target file: checkm_output/bins/pm372/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm372/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/112f34dc-51ac-448b-9d5c-565de00e3b22 checkm_output/bins/pm372/genes.faa # Current dir: /mnt/data/azomer/reads-for-assembly/files/output/allcontigs/output_1512029421078392887 # Date: Thu Nov 30 10:04:10 2017 # [ok]