# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_103 - 228 Cons_hypoth95 PF03602.10 183 8.3e-06 18.3 0.0 1 2 0.00024 0.026 6.9 0.0 112 168 18 76 9 83 0.68 # 90407 # 91090 # -1 # ID=1_103;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.573 1_103 - 228 Cons_hypoth95 PF03602.10 183 8.3e-06 18.3 0.0 2 2 4e-05 0.0043 9.4 0.0 41 62 162 183 145 218 0.78 # 90407 # 91090 # -1 # ID=1_103;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.573 1_42 - 518 ABC_tran PF00005.22 137 8e-05 16.0 0.0 1 1 5.3e-06 0.00029 14.2 0.0 12 37 226 251 217 288 0.81 # 32293 # 33846 # 1 # ID=1_42;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.470 1_55 - 383 ABC_tran PF00005.22 137 0.00012 15.4 0.0 1 1 4.3e-06 0.00023 14.5 0.0 16 35 162 181 152 211 0.87 # 45580 # 46728 # 1 # ID=1_55;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.514 1_103 - 228 TIGR00095 TIGR00095 194 0.00032 13.1 0.0 1 2 0.0015 0.16 4.3 0.0 123 138 19 34 8 79 0.74 # 90407 # 91090 # -1 # ID=1_103;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.573 1_103 - 228 TIGR00095 TIGR00095 194 0.00032 13.1 0.0 2 2 0.00024 0.026 6.8 0.0 53 86 164 199 155 218 0.77 # 90407 # 91090 # -1 # ID=1_103;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.573 1_107 - 415 HHH_5 PF14520.1 60 0.00036 13.8 0.0 1 1 8.9e-06 0.00095 12.4 0.0 9 37 184 212 175 229 0.93 # 93476 # 94720 # 1 # ID=1_107;partial=01;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.517 1_55 - 383 MobB PF03205.9 140 2e-05 17.3 0.0 1 2 0.017 1.8 1.3 0.0 14 60 61 108 61 127 0.88 # 45580 # 46728 # 1 # ID=1_55;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.514 1_55 - 383 MobB PF03205.9 140 2e-05 17.3 0.0 2 2 3.1e-06 0.00033 13.4 0.0 5 26 162 183 160 193 0.90 # 45580 # 46728 # 1 # ID=1_55;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.514 1_63 - 235 DUF3584 PF12128.3 1201 0.00029 11.2 2.8 1 1 3.4e-06 0.00036 10.9 2.8 341 434 67 159 62 179 0.80 # 54778 # 55482 # 1 # ID=1_63;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.511 1_91 - 199 TilS_C PF11734.3 74 0.00029 13.1 0.0 1 1 6.3e-06 0.00068 11.9 0.0 29 45 7 23 6 28 0.88 # 82006 # 82602 # -1 # ID=1_91;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.536 1_42 - 518 AAA_19 PF13245.1 76 0.0001 15.1 0.0 1 1 2.6e-06 0.00028 13.7 0.0 10 46 226 259 218 268 0.79 # 32293 # 33846 # 1 # ID=1_42;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.470 1_4 - 215 CbiA PF01656.18 195 1.3e-09 30.7 0.1 1 1 1.8e-11 1.9e-09 30.2 0.1 1 145 4 124 4 173 0.79 # 2255 # 2899 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.428 1_103 - 228 MethyltransfD12 PF02086.10 260 0.00046 12.7 0.0 1 2 0.015 1.6 1.0 0.0 175 188 18 31 8 88 0.82 # 90407 # 91090 # -1 # ID=1_103;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.573 1_103 - 228 MethyltransfD12 PF02086.10 260 0.00046 12.7 0.0 2 2 4e-05 0.0043 9.5 0.0 20 46 163 189 148 197 0.78 # 90407 # 91090 # -1 # ID=1_103;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.573 1_30 - 96 Sigma70_r4_2 PF08281.7 54 5.2e-08 25.3 0.1 1 1 1.4e-09 1.5e-07 23.8 0.0 10 54 21 64 12 64 0.83 # 22885 # 23172 # 1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.448 1_42 - 518 AAA_23 PF13476.1 202 0.00014 15.3 0.2 1 1 9.7e-06 0.00052 13.4 0.0 20 38 226 244 208 249 0.84 # 32293 # 33846 # 1 # ID=1_42;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.470 1_55 - 383 AAA_23 PF13476.1 202 0.00024 14.5 0.0 1 1 7.3e-06 0.00039 13.8 0.0 19 40 157 178 142 209 0.83 # 45580 # 46728 # 1 # ID=1_55;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.514 1_26 - 283 TIGR00573 TIGR00573 217 1.7e-15 49.8 0.0 1 1 2.7e-17 2.9e-15 49.0 0.0 12 181 107 274 103 281 0.80 # 18356 # 19204 # -1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.565 1_103 - 228 Methyltransf_26 PF13659.1 117 8.3e-12 38.2 0.1 1 2 1.9e-07 2e-05 17.6 0.0 57 114 7 71 2 74 0.72 # 90407 # 91090 # -1 # ID=1_103;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.573 1_103 - 228 Methyltransf_26 PF13659.1 117 8.3e-12 38.2 0.1 2 2 9.7e-08 1e-05 18.6 0.0 4 45 167 207 164 223 0.82 # 90407 # 91090 # -1 # ID=1_103;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.573 1_42 - 518 AAA_30 PF13604.1 196 0.00034 13.2 0.0 1 1 5.8e-06 0.00062 12.4 0.0 4 44 211 251 209 276 0.84 # 32293 # 33846 # 1 # ID=1_42;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.470 1_91 - 199 TIGR02433 TIGR02433 47 0.0002 13.5 0.1 1 1 4.4e-06 0.00048 12.3 0.0 29 45 7 23 6 25 0.90 # 82006 # 82602 # -1 # ID=1_91;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.536 1_30 - 96 GerE PF00196.14 58 1.5e-06 20.5 0.0 1 1 1.9e-08 2e-06 20.1 0.0 3 49 21 67 19 72 0.89 # 22885 # 23172 # 1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.448 1_80 - 764 TraG-D_C PF12696.2 128 5.6e-07 22.5 0.2 1 1 1.2e-08 1.3e-06 21.4 0.2 1 88 437 524 437 554 0.82 # 70584 # 72875 # 1 # ID=1_80;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.498 1_4 - 215 MipZ PF09140.6 261 2.5e-08 26.2 2.3 1 2 0.0008 0.086 4.8 0.5 7 25 8 26 2 38 0.71 # 2255 # 2899 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.428 1_4 - 215 MipZ PF09140.6 261 2.5e-08 26.2 2.3 2 2 9e-09 9.6e-07 21.1 0.1 70 133 45 108 25 125 0.84 # 2255 # 2899 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.428 1_103 - 228 UPF0020 PF01170.13 180 1.1e-05 18.1 0.0 1 2 0.00022 0.024 7.2 0.0 103 127 17 41 4 89 0.69 # 90407 # 91090 # -1 # ID=1_103;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.573 1_103 - 228 UPF0020 PF01170.13 180 1.1e-05 18.1 0.0 2 2 6.2e-05 0.0066 9.0 0.0 28 54 163 189 158 221 0.67 # 90407 # 91090 # -1 # ID=1_103;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.573 1_36 - 197 Trp_repressor PF01371.14 88 0.00043 13.2 0.0 1 1 6.1e-06 0.00066 12.6 0.0 1 40 102 141 102 145 0.95 # 26731 # 27321 # 1 # ID=1_36;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.371 1_42 - 518 AAA PF00004.24 132 0.00027 14.2 0.1 1 3 0.064 6.8 -0.1 0.0 38 57 81 100 52 110 0.81 # 32293 # 33846 # 1 # ID=1_42;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.470 1_42 - 518 AAA PF00004.24 132 0.00027 14.2 0.1 2 3 0.00033 0.035 7.3 0.0 1 21 228 248 228 278 0.83 # 32293 # 33846 # 1 # ID=1_42;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.470 1_42 - 518 AAA PF00004.24 132 0.00027 14.2 0.1 3 3 0.017 1.8 1.8 0.0 9 66 442 508 436 515 0.64 # 32293 # 33846 # 1 # ID=1_42;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.470 1_94 - 683 KorB PF08535.5 93 2.1e-05 17.7 0.0 1 1 6.3e-07 6.8e-05 16.0 0.0 2 43 182 223 181 234 0.93 # 83804 # 85852 # -1 # ID=1_94;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.581 1_18 - 400 zf-C4_Topoisom PF01396.14 39 0.013 8.1 9.2 1 3 0.0002 0.022 7.4 0.3 22 36 53 66 43 69 0.86 # 11825 # 13024 # 1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.563 1_18 - 400 zf-C4_Topoisom PF01396.14 39 0.013 8.1 9.2 2 3 0.0041 0.44 3.2 0.5 2 10 73 81 72 82 0.83 # 11825 # 13024 # 1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.563 1_18 - 400 zf-C4_Topoisom PF01396.14 39 0.013 8.1 9.2 3 3 0.022 2.3 0.9 0.2 3 15 362 374 361 379 0.86 # 11825 # 13024 # 1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.563 1_103 - 228 N6_N4_Mtase PF01555.13 231 3.5e-36 117.8 0.0 1 1 1.3e-35 1.4e-33 109.3 0.0 1 228 21 200 21 203 0.90 # 90407 # 91090 # -1 # ID=1_103;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.573 1_2 - 327 Hydantoinase_A PF01968.13 290 7.1e-09 28.1 0.3 1 2 1.7e-06 0.00018 13.6 0.1 66 98 154 185 141 192 0.79 # 466 # 1446 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.440 1_2 - 327 Hydantoinase_A PF01968.13 290 7.1e-09 28.1 0.3 2 2 5.2e-06 0.00055 12.0 0.0 211 263 244 296 201 301 0.84 # 466 # 1446 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.440 1_42 - 518 AAA_16 PF13191.1 185 0.0001 15.4 0.0 1 1 6.4e-06 0.00034 13.6 0.0 8 51 213 252 212 301 0.78 # 32293 # 33846 # 1 # ID=1_42;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.470 1_55 - 383 AAA_16 PF13191.1 185 0.00031 13.7 0.0 1 1 1.2e-05 0.00066 12.7 0.0 27 52 160 188 148 282 0.82 # 45580 # 46728 # 1 # ID=1_55;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.514 1_55 - 383 AAA_22 PF13401.1 131 1.1e-05 18.6 0.0 1 1 4.9e-07 2.6e-05 17.4 0.0 4 46 157 196 152 233 0.76 # 45580 # 46728 # 1 # ID=1_55;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.514 1_42 - 518 AAA_22 PF13401.1 131 0.00028 14.0 0.0 1 1 1.3e-05 0.00068 12.8 0.0 6 28 227 249 222 330 0.77 # 32293 # 33846 # 1 # ID=1_42;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.470 1_84 - 283 Methyltransf_27 PF13708.1 194 3.6e-67 218.6 0.0 1 1 4.4e-69 4.7e-67 218.2 0.0 2 194 85 278 84 278 0.96 # 76609 # 77457 # -1 # ID=1_84;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.502 1_42 - 518 AAA_29 PF13555.1 62 3e-05 16.5 0.0 1 1 1.1e-06 6.1e-05 15.6 0.0 21 40 224 242 217 254 0.83 # 32293 # 33846 # 1 # ID=1_42;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.470 1_55 - 383 AAA_29 PF13555.1 62 4.1e-05 16.1 0.0 1 1 2.3e-06 0.00012 14.6 0.0 26 44 160 178 151 186 0.83 # 45580 # 46728 # 1 # ID=1_55;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.514 1_2 - 327 TIGR02350 TIGR02350 596 0.00011 13.3 0.5 1 3 0.083 8.8 -2.9 0.0 362 381 80 99 67 130 0.59 # 466 # 1446 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.440 1_2 - 327 TIGR02350 TIGR02350 596 0.00011 13.3 0.5 2 3 0.00011 0.011 6.7 0.0 175 200 159 181 142 198 0.82 # 466 # 1446 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.440 1_2 - 327 TIGR02350 TIGR02350 596 0.00011 13.3 0.5 3 3 0.00057 0.061 4.3 0.0 274 348 223 295 205 308 0.84 # 466 # 1446 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.440 1_26 - 283 RNase_H_2 PF13482.1 164 0.00012 14.9 0.0 1 1 7.8e-06 0.00083 12.2 0.0 1 79 105 199 105 255 0.57 # 18356 # 19204 # -1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.565 1_85 - 84 HTH_3 PF01381.17 55 4.2e-05 16.4 0.0 1 1 1e-06 0.00011 15.1 0.0 1 34 6 39 6 45 0.90 # 78038 # 78289 # 1 # ID=1_85;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.563 1_94 - 683 HTH_23 PF13384.1 50 1e-06 21.3 0.5 1 1 2.3e-07 8.2e-06 18.5 0.0 13 40 179 206 173 210 0.91 # 83804 # 85852 # -1 # ID=1_94;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.581 1_30 - 96 HTH_23 PF13384.1 50 3.9e-05 16.3 0.0 1 1 1.5e-06 5.4e-05 15.9 0.0 12 41 31 60 24 73 0.76 # 22885 # 23172 # 1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.448 1_85 - 84 HTH_23 PF13384.1 50 6.8e-05 15.5 0.2 1 1 1.1e-05 0.00038 13.2 0.1 17 33 14 30 6 38 0.86 # 78038 # 78289 # 1 # ID=1_85;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.563 1_85 - 84 HTH_19 PF12844.2 64 9.2e-05 15.5 0.0 1 1 1.2e-06 0.00012 15.1 0.0 7 53 9 56 5 67 0.87 # 78038 # 78289 # 1 # ID=1_85;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.563 1_85 - 84 DUF1870 PF08965.5 118 0.00027 13.6 1.0 1 1 3e-06 0.00032 13.4 1.0 1 75 1 78 1 82 0.69 # 78038 # 78289 # 1 # ID=1_85;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.563 1_30 - 96 HTH_29 PF13551.1 112 0.00016 14.9 0.0 1 1 4.3e-06 0.00023 14.3 0.0 8 36 33 60 27 76 0.79 # 22885 # 23172 # 1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.448 1_94 - 683 HTH_29 PF13551.1 112 0.00029 14.0 0.0 1 1 2.1e-05 0.0011 12.1 0.0 4 37 175 208 172 264 0.85 # 83804 # 85852 # -1 # ID=1_94;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.581 1_26 - 283 DNA_pol_A_exo1 PF01612.15 176 1.3e-05 17.7 0.0 1 1 2.7e-07 2.9e-05 16.6 0.0 20 95 102 196 87 266 0.84 # 18356 # 19204 # -1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.565 1_42 - 518 G-alpha PF00503.15 389 0.00067 11.3 0.0 1 2 0.054 5.8 -1.6 0.0 234 272 70 113 29 117 0.79 # 32293 # 33846 # 1 # ID=1_42;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.470 1_42 - 518 G-alpha PF00503.15 389 0.00067 11.3 0.0 2 2 1.9e-05 0.002 9.8 0.0 58 87 225 254 214 325 0.84 # 32293 # 33846 # 1 # ID=1_42;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.470 1_52 - 195 DNA_pol3_delta PF06144.8 172 2.2e-06 20.3 0.0 1 1 3e-08 3.2e-06 19.7 0.0 35 99 92 152 74 179 0.80 # 43331 # 43915 # 1 # ID=1_52;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.403 1_80 - 764 TrwB_AAD_bind PF10412.4 386 2.4e-06 19.3 0.2 1 2 9.3e-05 0.01 7.4 0.0 11 32 132 153 126 157 0.84 # 70584 # 72875 # 1 # ID=1_80;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.498 1_80 - 764 TrwB_AAD_bind PF10412.4 386 2.4e-06 19.3 0.2 2 2 3e-05 0.0032 9.0 0.1 247 332 440 525 427 555 0.88 # 70584 # 72875 # 1 # ID=1_80;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.498 1_4 - 215 TIGR01968 TIGR01968 261 8.3e-05 14.7 2.1 1 2 8.1e-06 0.00043 12.3 0.8 3 50 3 44 1 49 0.80 # 2255 # 2899 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.428 1_4 - 215 TIGR01968 TIGR01968 261 8.3e-05 14.7 2.1 2 2 0.017 0.9 1.5 0.0 101 140 63 102 49 123 0.75 # 2255 # 2899 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.428 1_2 - 327 TIGR01968 TIGR01968 261 0.00046 12.2 1.5 1 1 3.5e-05 0.0019 10.2 1.4 46 128 63 155 60 215 0.74 # 466 # 1446 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.440 1_55 - 383 AAA_18 PF13238.1 129 1.6e-05 18.2 0.0 1 1 6e-07 3.2e-05 17.3 0.0 2 42 161 197 161 230 0.83 # 45580 # 46728 # 1 # ID=1_55;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.514 1_42 - 518 AAA_18 PF13238.1 129 0.00035 13.9 0.0 1 1 2.1e-05 0.0011 12.2 0.0 1 18 228 245 228 316 0.86 # 32293 # 33846 # 1 # ID=1_42;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.470 1_107 - 415 IMS_HHH PF11798.3 32 1.1e-08 27.9 0.2 1 1 3e-10 3.2e-08 26.4 0.2 6 32 175 201 170 201 0.92 # 93476 # 94720 # 1 # ID=1_107;partial=01;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.517 1_103 - 228 Methyltransf_15 PF09445.5 164 0.00082 11.9 0.0 1 2 0.042 4.5 -0.2 0.0 53 79 4 29 2 33 0.90 # 90407 # 91090 # -1 # ID=1_103;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.573 1_103 - 228 Methyltransf_15 PF09445.5 164 0.00082 11.9 0.0 2 2 4.2e-05 0.0045 9.5 0.0 3 31 166 194 164 209 0.86 # 90407 # 91090 # -1 # ID=1_103;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.573 1_26 - 283 TIGR01406 TIGR01406 231 3.3e-17 55.5 0.0 1 1 5.2e-19 5.6e-17 54.8 0.0 4 170 106 268 104 280 0.78 # 18356 # 19204 # -1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.565 1_63 - 235 DUF3810 PF12725.2 318 0.0011 10.8 1.1 1 1 1.7e-05 0.0018 10.1 1.1 90 174 106 189 95 194 0.84 # 54778 # 55482 # 1 # ID=1_63;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.511 1_55 - 383 DUF87 PF01935.12 229 0.00066 12.5 0.0 1 1 1.1e-05 0.0012 11.7 0.0 28 56 162 191 161 192 0.88 # 45580 # 46728 # 1 # ID=1_55;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.514 1_30 - 96 HTH_28 PF13518.1 52 0.00016 14.7 0.0 1 1 4.3e-06 0.00047 13.2 0.0 9 38 33 62 26 75 0.86 # 22885 # 23172 # 1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.448 1_26 - 283 TIGR01298 TIGR01298 200 6.4e-07 22.0 1.0 1 1 5.7e-08 6.1e-06 18.8 1.0 93 189 167 267 97 275 0.80 # 18356 # 19204 # -1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.565 1_85 - 84 HTH_31 PF13560.1 64 6.2e-07 22.6 1.7 1 1 9.5e-09 1e-06 21.9 1.1 3 43 3 43 2 58 0.86 # 78038 # 78289 # 1 # ID=1_85;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.563 1_42 - 518 T2SE PF00437.15 272 2.6e-41 134.3 0.1 1 1 9.6e-43 5.1e-41 133.3 0.0 10 271 97 373 90 374 0.85 # 32293 # 33846 # 1 # ID=1_42;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.470 1_55 - 383 T2SE PF00437.15 272 8.6e-36 116.2 0.0 1 1 2.4e-37 1.3e-35 115.6 0.0 120 269 149 306 127 309 0.88 # 45580 # 46728 # 1 # ID=1_55;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.514 1_2 - 327 StbA PF06406.6 318 1.1e-156 513.5 1.2 1 1 1.2e-158 1.3e-156 513.4 1.2 1 318 1 319 1 319 1.00 # 466 # 1446 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.440 1_55 - 383 AAA_17 PF13207.1 121 2e-05 18.4 0.1 1 2 4.7e-06 0.00025 14.9 0.0 3 47 161 208 161 251 0.76 # 45580 # 46728 # 1 # ID=1_55;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.514 1_55 - 383 AAA_17 PF13207.1 121 2e-05 18.4 0.1 2 2 0.086 4.6 1.1 0.1 24 113 332 363 274 374 0.60 # 45580 # 46728 # 1 # ID=1_55;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.514 1_42 - 518 AAA_17 PF13207.1 121 2.3e-05 18.2 0.2 1 1 2.1e-06 0.00011 16.0 0.0 1 24 227 255 227 345 0.72 # 32293 # 33846 # 1 # ID=1_42;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.470 1_27 - 94 TIGR02211 TIGR02211 221 0.00014 14.1 0.0 1 1 1.4e-06 0.00015 14.0 0.0 114 167 14 72 2 87 0.78 # 19244 # 19525 # -1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.535 1_55 - 383 AAA_25 PF13481.1 194 0.00021 13.7 0.0 1 1 7e-06 0.00038 12.9 0.0 24 58 148 182 124 207 0.78 # 45580 # 46728 # 1 # ID=1_55;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.514 1_42 - 518 AAA_25 PF13481.1 194 0.0003 13.2 0.1 1 2 8.7e-05 0.0047 9.3 0.0 25 65 217 260 200 270 0.72 # 32293 # 33846 # 1 # ID=1_42;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.470 1_42 - 518 AAA_25 PF13481.1 194 0.0003 13.2 0.1 2 2 0.039 2.1 0.7 0.0 153 190 297 337 292 340 0.74 # 32293 # 33846 # 1 # ID=1_42;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.470 1_42 - 518 AAA_14 PF13173.1 128 0.00084 12.3 0.0 1 1 3.7e-05 0.004 10.1 0.0 5 30 228 254 225 286 0.80 # 32293 # 33846 # 1 # ID=1_42;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.470 1_4 - 215 VirC1 PF07015.6 231 0.00044 12.4 0.0 1 2 0.00073 0.078 5.0 0.0 3 29 3 29 1 36 0.81 # 2255 # 2899 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.428 1_4 - 215 VirC1 PF07015.6 231 0.00044 12.4 0.0 2 2 0.00052 0.055 5.5 0.0 87 190 77 181 59 194 0.70 # 2255 # 2899 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.428 1_30 - 96 HTH_Tnp_ISL3 PF13542.1 52 6.5e-05 15.1 0.0 1 1 9.7e-07 0.0001 14.5 0.0 29 50 38 59 34 60 0.89 # 22885 # 23172 # 1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.448 1_9 - 197 PaaX PF07848.7 70 0.00038 13.5 0.0 1 1 6.7e-06 0.00072 12.6 0.0 15 68 23 80 13 82 0.77 # 5745 # 6335 # 1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.650 1_55 - 383 RNA_helicase PF00910.17 107 0.0001 15.5 0.0 1 1 1.9e-06 0.0002 14.5 0.0 2 28 161 187 160 205 0.83 # 45580 # 46728 # 1 # ID=1_55;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.514 1_55 - 383 ATP_bind_1 PF03029.12 238 5e-05 15.9 0.0 1 1 7.2e-07 7.7e-05 15.3 0.0 1 23 162 184 162 197 0.86 # 45580 # 46728 # 1 # ID=1_55;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.514 1_42 - 518 DAP3 PF10236.4 309 0.00067 11.6 0.0 1 1 1.2e-05 0.0013 10.7 0.0 21 42 223 244 215 253 0.86 # 32293 # 33846 # 1 # ID=1_42;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.470 1_18 - 400 Zn_Tnp_IS1595 PF12760.2 46 0.0073 9.2 6.7 1 2 0.0026 0.28 4.1 1.2 19 32 73 85 57 97 0.74 # 11825 # 13024 # 1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.563 1_18 - 400 Zn_Tnp_IS1595 PF12760.2 46 0.0073 9.2 6.7 2 2 0.0005 0.054 6.4 0.4 8 32 350 374 346 379 0.84 # 11825 # 13024 # 1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.563 1_26 - 283 RNase_T PF00929.19 164 3.6e-26 85.4 0.0 1 1 4.3e-28 4.6e-26 85.0 0.0 1 163 105 262 105 263 0.95 # 18356 # 19204 # -1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.565 1_68 - 1015 AAA_10 PF12846.2 304 1.2e-30 99.9 0.0 1 1 1e-31 2.8e-30 98.7 0.0 8 302 502 897 498 898 0.89 # 57590 # 60634 # 1 # ID=1_68;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.508 1_80 - 764 AAA_10 PF12846.2 304 2.8e-05 16.6 1.0 1 1 3.1e-06 8.4e-05 15.1 1.0 2 287 137 501 136 514 0.62 # 70584 # 72875 # 1 # ID=1_80;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.498 1_42 - 518 AAA_10 PF12846.2 304 0.00024 13.6 0.0 1 1 1.7e-05 0.00045 12.7 0.0 4 30 228 256 226 320 0.81 # 32293 # 33846 # 1 # ID=1_42;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.470 1_55 - 383 AAA_10 PF12846.2 304 0.00055 12.4 0.0 1 1 4e-05 0.0011 11.4 0.0 2 21 158 177 157 196 0.83 # 45580 # 46728 # 1 # ID=1_55;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.514 1_86 - 61 Yae1_N PF09811.4 39 6.2e-05 15.5 0.4 1 1 8.5e-07 9.1e-05 15.0 0.4 15 26 9 20 8 26 0.92 # 78320 # 78502 # -1 # ID=1_86;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.525 1_96 - 176 SSB PF00436.20 104 6.5e-41 131.5 0.3 1 1 7.9e-43 8.5e-41 131.1 0.3 1 101 6 109 6 112 0.96 # 86112 # 86639 # -1 # ID=1_96;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.602 # # Program: hmmsearch # Version: 3.1b1 (May 2013) # Pipeline mode: SEARCH # Query file: /tmp/7408d8a1-d55b-4348-a5e0-4f2a3e59b754 # Target file: checkm_output/bins/pm365/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm365/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/7408d8a1-d55b-4348-a5e0-4f2a3e59b754 checkm_output/bins/pm365/genes.faa # Current dir: /mnt/data/azomer/reads-for-assembly/files/output/allcontigs/output_1512029421078392887 # Date: Thu Nov 30 10:04:05 2017 # [ok]