# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_63 - 228 Cons_hypoth95 PF03602.10 183 1e-05 18.1 0.0 1 2 0.00027 0.032 6.8 0.0 112 168 18 76 9 83 0.68 # 54415 # 55098 # 1 # ID=1_63;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.576 1_63 - 228 Cons_hypoth95 PF03602.10 183 1e-05 18.1 0.0 2 2 3.9e-05 0.0047 9.5 0.0 41 62 162 183 145 219 0.78 # 54415 # 55098 # 1 # ID=1_63;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.576 1_25 - 505 HTH_IclR PF09339.5 52 2.2e-07 23.6 0.2 1 2 8.2e-08 5e-06 19.3 0.0 17 41 14 38 1 38 0.81 # 22449 # 23963 # 1 # ID=1_25;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.542 1_25 - 505 HTH_IclR PF09339.5 52 2.2e-07 23.6 0.2 2 2 0.04 2.4 1.1 0.0 6 31 427 454 426 455 0.88 # 22449 # 23963 # 1 # ID=1_25;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.542 1_32 - 510 HTH_IclR PF09339.5 52 0.00057 12.7 0.1 1 1 5.6e-05 0.0034 10.2 0.1 25 49 228 252 228 255 0.92 # 28440 # 29969 # -1 # ID=1_32;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.697 1_6 - 518 ABC_tran PF00005.22 137 9.1e-05 16.0 0.0 1 1 5.3e-06 0.00032 14.2 0.0 12 37 226 251 217 288 0.81 # 4018 # 5571 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.469 1_113 - 383 ABC_tran PF00005.22 137 0.00014 15.4 0.0 1 1 4.3e-06 0.00026 14.5 0.0 16 35 162 181 152 211 0.87 # 101040 # 102188 # -1 # ID=1_113;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.516 1_63 - 228 TIGR00095 TIGR00095 194 0.00037 13.0 0.0 1 2 0.0015 0.18 4.3 0.0 123 138 19 34 8 79 0.74 # 54415 # 55098 # 1 # ID=1_63;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.576 1_63 - 228 TIGR00095 TIGR00095 194 0.00037 13.0 0.0 2 2 0.00024 0.029 6.9 0.0 53 86 164 199 155 219 0.77 # 54415 # 55098 # 1 # ID=1_63;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.576 1_26 - 262 DUF815 PF05673.8 250 0.00027 13.1 0.0 1 1 3.6e-06 0.00044 12.4 0.0 23 76 65 122 46 139 0.79 # 23950 # 24735 # 1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.501 1_25 - 505 HTH_AsnC-type PF13404.1 42 0.00071 12.3 0.0 1 1 1.6e-05 0.0019 10.9 0.0 18 35 16 33 13 36 0.94 # 22449 # 23963 # 1 # ID=1_25;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.542 1_118 - 302 rve_3 PF13683.1 67 7.9e-20 63.4 0.1 1 1 2.4e-21 2.9e-19 61.6 0.0 2 67 216 281 215 281 0.98 # 104603 # 105508 # 1 # ID=1_118;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.550 1_25 - 505 HTH_40 PF14493.1 91 7.3e-05 16.2 0.0 1 1 4.2e-06 0.00051 13.5 0.0 10 36 12 38 6 51 0.90 # 22449 # 23963 # 1 # ID=1_25;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.542 1_25 - 505 HTH_38 PF13936.1 44 2.1e-05 17.2 0.2 1 1 3.9e-07 4.7e-05 16.1 0.2 13 41 7 36 5 38 0.87 # 22449 # 23963 # 1 # ID=1_25;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.542 1_113 - 383 MobB PF03205.9 140 2.3e-05 17.3 0.0 1 2 0.017 2 1.3 0.0 14 60 61 108 61 127 0.88 # 101040 # 102188 # -1 # ID=1_113;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.516 1_113 - 383 MobB PF03205.9 140 2.3e-05 17.3 0.0 2 2 3.1e-06 0.00038 13.4 0.0 5 26 162 183 160 193 0.90 # 101040 # 102188 # -1 # ID=1_113;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.516 1_25 - 505 TetR_N PF00440.18 47 0.00022 14.1 0.0 1 1 3.9e-06 0.00047 13.0 0.0 15 40 14 39 14 40 0.91 # 22449 # 23963 # 1 # ID=1_25;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.542 1_26 - 262 AAA_19 PF13245.1 76 4.5e-07 22.8 0.0 1 1 1.9e-08 1.2e-06 21.4 0.0 11 37 101 126 95 147 0.81 # 23950 # 24735 # 1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.501 1_6 - 518 AAA_19 PF13245.1 76 0.00011 15.1 0.0 1 1 5.3e-06 0.00032 13.7 0.0 10 46 226 259 218 268 0.79 # 4018 # 5571 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.469 1_57 - 211 CbiA PF01656.18 195 7.7e-16 51.2 0.1 1 1 1.5e-17 1.9e-15 50.0 0.1 3 178 7 164 5 180 0.75 # 49833 # 50465 # 1 # ID=1_57;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.469 1_26 - 262 KTI12 PF08433.5 270 0.00021 13.7 0.4 1 2 6.4e-05 0.0077 8.6 0.0 4 81 102 172 101 174 0.68 # 23950 # 24735 # 1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.501 1_26 - 262 KTI12 PF08433.5 270 0.00021 13.7 0.4 2 2 0.0037 0.44 2.8 0.1 34 59 232 257 212 261 0.77 # 23950 # 24735 # 1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.501 1_63 - 228 MethyltransfD12 PF02086.10 260 0.0005 12.7 0.0 1 2 0.014 1.7 1.1 0.0 175 188 18 31 8 91 0.80 # 54415 # 55098 # 1 # ID=1_63;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.576 1_63 - 228 MethyltransfD12 PF02086.10 260 0.0005 12.7 0.0 2 2 4e-05 0.0048 9.5 0.0 20 46 163 189 148 197 0.78 # 54415 # 55098 # 1 # ID=1_63;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.576 1_18 - 96 Sigma70_r4_2 PF08281.7 54 5.9e-08 25.3 0.1 1 1 2.9e-09 1.7e-07 23.8 0.0 10 54 21 64 12 64 0.83 # 14692 # 14979 # -1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.448 1_25 - 505 Sigma70_r4_2 PF08281.7 54 6.6e-06 18.8 0.1 1 1 3.5e-07 2.1e-05 17.2 0.0 23 48 12 37 9 38 0.91 # 22449 # 23963 # 1 # ID=1_25;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.542 1_23 - 550 rve PF00665.21 120 2.1e-26 85.6 0.0 1 1 9.6e-28 3.9e-26 84.7 0.0 2 120 163 303 162 303 0.95 # 19826 # 21475 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.646 1_118 - 302 rve PF00665.21 120 2.4e-26 85.4 0.0 1 1 1.1e-27 4.4e-26 84.6 0.0 3 119 123 243 121 244 0.97 # 104603 # 105508 # 1 # ID=1_118;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.550 1_25 - 505 rve PF00665.21 120 2e-15 50.2 0.2 1 1 9.5e-17 3.8e-15 49.2 0.2 4 119 127 253 125 254 0.95 # 22449 # 23963 # 1 # ID=1_25;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.542 1_76 - 392 zf-ribbon_3 PF13248.1 26 0.00087 11.7 3.8 1 2 0.0086 0.52 2.9 1.5 16 25 321 330 319 332 0.72 # 63026 # 64201 # 1 # ID=1_76;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.487 1_76 - 392 zf-ribbon_3 PF13248.1 26 0.00087 11.7 3.8 2 2 0.00014 0.0086 8.6 0.0 4 13 342 351 340 357 0.80 # 63026 # 64201 # 1 # ID=1_76;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.487 1_32 - 510 zf-ribbon_3 PF13248.1 26 0.092 5.3 11.3 1 2 0.00014 0.0087 8.6 0.9 18 24 102 108 100 116 0.66 # 28440 # 29969 # -1 # ID=1_32;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.697 1_32 - 510 zf-ribbon_3 PF13248.1 26 0.092 5.3 11.3 2 2 0.0094 0.57 2.8 0.1 19 23 461 465 456 469 0.69 # 28440 # 29969 # -1 # ID=1_32;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.697 1_26 - 262 MCM PF00493.18 331 0.00025 13.1 0.0 1 2 7.5e-06 0.0009 11.2 0.0 56 120 98 162 82 172 0.81 # 23950 # 24735 # 1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.501 1_26 - 262 MCM PF00493.18 331 0.00025 13.1 0.0 2 2 0.034 4.1 -0.8 0.0 161 211 190 237 186 259 0.71 # 23950 # 24735 # 1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.501 1_6 - 518 AAA_23 PF13476.1 202 0.00015 15.3 0.2 1 1 9.7e-06 0.00059 13.4 0.0 20 38 226 244 208 249 0.84 # 4018 # 5571 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.469 1_113 - 383 AAA_23 PF13476.1 202 0.00027 14.5 0.0 1 1 7.3e-06 0.00044 13.8 0.0 19 40 157 178 142 209 0.83 # 101040 # 102188 # -1 # ID=1_113;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.516 1_22 - 283 TIGR00573 TIGR00573 217 1.9e-15 49.8 0.0 1 1 2.7e-17 3.3e-15 49.0 0.0 12 181 107 274 103 281 0.80 # 18660 # 19508 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.564 1_63 - 228 Methyltransf_26 PF13659.1 117 1.4e-11 37.7 0.1 1 2 2.6e-07 3.1e-05 17.2 0.0 57 114 7 71 2 74 0.69 # 54415 # 55098 # 1 # ID=1_63;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.576 1_63 - 228 Methyltransf_26 PF13659.1 117 1.4e-11 37.7 0.1 2 2 1e-07 1.3e-05 18.5 0.0 4 44 167 206 164 221 0.82 # 54415 # 55098 # 1 # ID=1_63;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.576 1_6 - 518 AAA_30 PF13604.1 196 0.00039 13.2 0.0 1 1 1.2e-05 0.0007 12.4 0.0 4 44 211 251 209 276 0.84 # 4018 # 5571 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.469 1_26 - 262 AAA_30 PF13604.1 196 0.00057 12.7 0.2 1 1 2.8e-05 0.0017 11.1 0.1 16 49 97 131 87 162 0.73 # 23950 # 24735 # 1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.501 1_117 - 122 CPSase_L_D3 PF02787.14 123 0.00062 12.7 0.2 1 2 0.0027 0.33 3.9 0.0 5 31 11 37 8 49 0.85 # 104280 # 104645 # 1 # ID=1_117;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.525 1_117 - 122 CPSase_L_D3 PF02787.14 123 0.00062 12.7 0.2 2 2 0.00031 0.038 7.0 0.1 42 80 76 112 73 117 0.89 # 104280 # 104645 # 1 # ID=1_117;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.525 1_117 - 122 HTH_Tnp_1 PF01527.15 76 4.5e-21 67.8 1.1 1 1 4.8e-23 5.9e-21 67.5 0.6 2 74 8 87 7 89 0.89 # 104280 # 104645 # 1 # ID=1_117;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.525 1_18 - 96 GerE PF00196.14 58 1.7e-06 20.5 0.0 1 1 1.9e-08 2.3e-06 20.1 0.0 3 49 21 67 19 72 0.89 # 14692 # 14979 # -1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.448 1_87 - 764 TraG-D_C PF12696.2 128 6.3e-07 22.5 0.2 1 1 1.2e-08 1.4e-06 21.4 0.2 1 88 437 524 437 554 0.82 # 73398 # 75689 # -1 # ID=1_87;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.500 1_26 - 262 Bac_DnaA PF00308.13 219 1.6e-10 34.2 0.0 1 1 2.1e-12 2.5e-10 33.5 0.0 36 136 101 199 80 221 0.87 # 23950 # 24735 # 1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.501 1_57 - 211 MipZ PF09140.6 261 7.4e-09 28.2 0.2 1 3 7.2e-07 8.7e-05 14.8 0.1 5 51 7 53 3 59 0.89 # 49833 # 50465 # 1 # ID=1_57;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.469 1_57 - 211 MipZ PF09140.6 261 7.4e-09 28.2 0.2 2 3 1.2e-05 0.0014 10.8 0.0 88 135 69 116 58 151 0.82 # 49833 # 50465 # 1 # ID=1_57;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.469 1_57 - 211 MipZ PF09140.6 261 7.4e-09 28.2 0.2 3 3 0.066 7.9 -1.4 0.0 206 237 161 193 137 202 0.76 # 49833 # 50465 # 1 # ID=1_57;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.469 1_63 - 228 UPF0020 PF01170.13 180 1.5e-05 17.8 0.0 1 2 0.00028 0.033 6.9 0.0 103 121 17 35 4 89 0.71 # 54415 # 55098 # 1 # ID=1_63;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.576 1_63 - 228 UPF0020 PF01170.13 180 1.5e-05 17.8 0.0 2 2 6.3e-05 0.0076 9.0 0.0 28 54 163 189 158 220 0.67 # 54415 # 55098 # 1 # ID=1_63;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.576 1_12 - 197 Trp_repressor PF01371.14 88 0.00048 13.2 0.0 1 1 6.1e-06 0.00074 12.6 0.0 1 40 102 141 102 145 0.95 # 10543 # 11133 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.372 1_26 - 262 AAA PF00004.24 132 1.3e-07 25.1 0.0 1 1 5.3e-09 2.1e-07 24.4 0.0 1 111 102 202 102 230 0.70 # 23950 # 24735 # 1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.501 1_6 - 518 AAA PF00004.24 132 0.0003 14.2 0.1 1 2 0.00098 0.04 7.3 0.0 1 21 228 248 228 278 0.83 # 4018 # 5571 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.469 1_6 - 518 AAA PF00004.24 132 0.0003 14.2 0.1 2 2 0.051 2.1 1.8 0.0 9 66 442 508 436 515 0.64 # 4018 # 5571 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.469 1_57 - 211 AAA PF00004.24 132 0.001 12.5 0.0 1 1 4.3e-05 0.0017 11.7 0.0 8 38 13 55 9 104 0.73 # 49833 # 50465 # 1 # ID=1_57;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.469 1_63 - 228 N6_N4_Mtase PF01555.13 231 5e-36 117.5 0.0 1 2 7.6e-15 9.2e-13 41.3 0.0 1 114 21 124 21 137 0.89 # 54415 # 55098 # 1 # ID=1_63;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.576 1_63 - 228 N6_N4_Mtase PF01555.13 231 5e-36 117.5 0.0 2 2 5.4e-25 6.5e-23 74.5 0.0 169 228 141 200 126 203 0.90 # 54415 # 55098 # 1 # ID=1_63;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.576 1_59 - 325 Hydantoinase_A PF01968.13 290 1e-05 17.9 2.1 1 2 1.3e-06 0.00016 14.0 0.6 75 119 164 205 149 232 0.79 # 51078 # 52052 # 1 # ID=1_59;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.459 1_59 - 325 Hydantoinase_A PF01968.13 290 1e-05 17.9 2.1 2 2 0.0028 0.34 3.1 0.0 222 262 252 296 213 311 0.71 # 51078 # 52052 # 1 # ID=1_59;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.459 1_25 - 505 MerR_1 PF13411.1 69 0.00013 15.0 0.0 1 1 2.7e-06 0.00033 13.6 0.0 2 30 17 45 16 51 0.90 # 22449 # 23963 # 1 # ID=1_25;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.542 1_24 - 287 AAA_16 PF13191.1 185 1.7e-05 18.1 0.0 1 2 3.1e-05 0.00094 12.3 0.0 8 52 45 94 43 146 0.70 # 21478 # 22338 # 1 # ID=1_24;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.656 1_24 - 287 AAA_16 PF13191.1 185 1.7e-05 18.1 0.0 2 2 0.015 0.47 3.6 0.0 139 183 134 184 114 186 0.72 # 21478 # 22338 # 1 # ID=1_24;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.656 1_6 - 518 AAA_16 PF13191.1 185 0.00011 15.4 0.0 1 1 1.3e-05 0.00039 13.6 0.0 8 51 213 252 212 301 0.78 # 4018 # 5571 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.469 1_26 - 262 AAA_16 PF13191.1 185 0.00017 14.7 0.1 1 1 1.4e-05 0.00041 13.5 0.1 23 51 98 126 84 166 0.79 # 23950 # 24735 # 1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.501 1_113 - 383 AAA_16 PF13191.1 185 0.00035 13.7 0.0 1 1 2.5e-05 0.00074 12.7 0.0 27 52 160 188 148 282 0.82 # 101040 # 102188 # -1 # ID=1_113;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.516 1_32 - 510 zf-NADH-PPase PF09297.6 32 0.039 6.7 11.8 1 4 0.021 2.5 0.9 0.3 23 30 83 90 80 90 0.87 # 28440 # 29969 # -1 # ID=1_32;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.697 1_32 - 510 zf-NADH-PPase PF09297.6 32 0.039 6.7 11.8 2 4 0.00034 0.041 6.7 0.6 4 12 101 109 98 115 0.84 # 28440 # 29969 # -1 # ID=1_32;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.697 1_32 - 510 zf-NADH-PPase PF09297.6 32 0.039 6.7 11.8 3 4 0.064 7.7 -0.6 0.0 7 17 176 186 175 191 0.74 # 28440 # 29969 # -1 # ID=1_32;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.697 1_32 - 510 zf-NADH-PPase PF09297.6 32 0.039 6.7 11.8 4 4 0.0031 0.37 3.6 0.2 6 16 461 471 461 474 0.86 # 28440 # 29969 # -1 # ID=1_32;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.697 1_24 - 287 AAA_22 PF13401.1 131 4.6e-17 55.6 0.0 1 1 2.7e-18 8.1e-17 54.8 0.0 7 126 64 190 59 194 0.94 # 21478 # 22338 # 1 # ID=1_24;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.656 1_26 - 262 AAA_22 PF13401.1 131 3.3e-06 20.5 0.1 1 2 1.1e-05 0.00033 14.0 0.2 2 28 97 123 96 159 0.74 # 23950 # 24735 # 1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.501 1_26 - 262 AAA_22 PF13401.1 131 3.3e-06 20.5 0.1 2 2 0.0083 0.25 4.7 0.0 87 117 151 196 132 204 0.62 # 23950 # 24735 # 1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.501 1_113 - 383 AAA_22 PF13401.1 131 1.2e-05 18.6 0.0 1 1 9.8e-07 3e-05 17.4 0.0 4 46 157 196 152 233 0.76 # 101040 # 102188 # -1 # ID=1_113;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.516 1_6 - 518 AAA_22 PF13401.1 131 0.00032 14.0 0.0 1 1 2.5e-05 0.00077 12.8 0.0 6 28 227 249 222 330 0.77 # 4018 # 5571 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.469 1_26 - 262 TIGR00362 TIGR00362 437 5.5e-13 41.5 0.0 1 1 7.2e-15 8.7e-13 40.9 0.0 138 240 100 200 77 220 0.90 # 23950 # 24735 # 1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.501 1_83 - 283 Methyltransf_27 PF13708.1 194 3.1e-67 219.0 0.0 1 1 3.6e-69 4.3e-67 218.5 0.0 2 194 85 278 84 278 0.96 # 68816 # 69664 # 1 # ID=1_83;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.508 1_26 - 262 AAA_29 PF13555.1 62 1.7e-05 17.5 0.0 1 1 8.4e-07 3.4e-05 16.5 0.0 5 47 80 125 78 136 0.83 # 23950 # 24735 # 1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.501 1_6 - 518 AAA_29 PF13555.1 62 3.4e-05 16.5 0.0 1 1 1.7e-06 6.9e-05 15.6 0.0 21 40 224 242 217 254 0.83 # 4018 # 5571 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.469 1_113 - 383 AAA_29 PF13555.1 62 4.6e-05 16.1 0.0 1 1 3.4e-06 0.00014 14.6 0.0 26 44 160 178 151 186 0.83 # 101040 # 102188 # -1 # ID=1_113;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.516 1_25 - 505 HTH_Tnp_Tc3_1 PF11427.3 50 0.00076 12.3 0.1 1 1 1.6e-05 0.002 11.0 0.1 20 42 15 37 11 41 0.91 # 22449 # 23963 # 1 # ID=1_25;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.542 1_26 - 262 AAA_28 PF13521.1 163 1.1e-05 18.6 1.1 1 1 4.6e-07 5.5e-05 16.3 0.8 1 24 101 124 101 239 0.90 # 23950 # 24735 # 1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.501 1_22 - 283 RNase_H_2 PF13482.1 164 0.00014 14.9 0.0 1 1 7.8e-06 0.00094 12.2 0.0 1 79 105 199 105 255 0.57 # 18660 # 19508 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.564 1_82 - 84 HTH_3 PF01381.17 55 4.8e-05 16.4 0.0 1 1 1e-06 0.00012 15.1 0.0 1 34 6 39 6 45 0.90 # 67985 # 68236 # -1 # ID=1_82;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.560 1_117 - 122 HTH_23 PF13384.1 50 2.8e-07 23.3 0.1 1 1 2.8e-08 5.6e-07 22.3 0.1 3 48 14 60 12 62 0.90 # 104280 # 104645 # 1 # ID=1_117;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.525 1_25 - 505 HTH_23 PF13384.1 50 4.6e-07 22.6 0.5 1 1 7.2e-08 1.4e-06 21.0 0.5 14 39 12 37 2 39 0.87 # 22449 # 23963 # 1 # ID=1_25;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.542 1_23 - 550 HTH_23 PF13384.1 50 3.4e-06 19.8 0.4 1 1 1.7e-07 3.4e-06 19.8 0.4 4 45 14 61 13 66 0.86 # 19826 # 21475 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.646 1_72 - 683 HTH_23 PF13384.1 50 5.9e-06 19.1 0.0 1 1 4.7e-06 9.4e-05 15.2 0.0 13 40 179 206 173 210 0.91 # 59643 # 61691 # 1 # ID=1_72;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.589 1_18 - 96 HTH_23 PF13384.1 50 4.4e-05 16.3 0.0 1 1 3e-06 6.1e-05 15.9 0.0 12 41 31 60 24 73 0.76 # 14692 # 14979 # -1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.448 1_82 - 84 HTH_23 PF13384.1 50 7.7e-05 15.5 0.2 1 1 2.1e-05 0.00043 13.2 0.1 17 33 14 30 6 38 0.86 # 67985 # 68236 # -1 # ID=1_82;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.560 1_51 - 116 zf-DHHC PF01529.15 174 0.0028 10.2 4.8 1 1 2.9e-05 0.0036 9.9 4.8 88 151 32 108 10 113 0.82 # 45802 # 46149 # -1 # ID=1_51;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.345 1_25 - 505 HTH_7 PF02796.10 45 5.8e-06 19.3 0.1 1 1 1.1e-07 1.4e-05 18.1 0.1 20 43 14 37 12 39 0.92 # 22449 # 23963 # 1 # ID=1_25;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.542 1_82 - 84 HTH_19 PF12844.2 64 0.0001 15.5 0.0 1 1 1.2e-06 0.00014 15.1 0.0 7 53 9 56 5 67 0.87 # 67985 # 68236 # -1 # ID=1_82;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.560 1_82 - 84 DUF1870 PF08965.5 118 0.0003 13.6 1.0 1 1 3e-06 0.00036 13.4 1.0 1 75 1 78 1 82 0.69 # 67985 # 68236 # -1 # ID=1_82;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.560 1_26 - 262 Mg_chelatase PF01078.16 207 0.00061 12.1 0.0 1 1 1.1e-05 0.0013 11.1 0.0 23 43 100 120 96 153 0.86 # 23950 # 24735 # 1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.501 1_23 - 550 HTH_29 PF13551.1 112 4.2e-06 20.1 0.3 1 1 1.4e-07 4.2e-06 20.1 0.3 13 76 29 98 17 121 0.79 # 19826 # 21475 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.646 1_117 - 122 HTH_29 PF13551.1 112 2.8e-05 17.5 0.2 1 1 1.4e-06 4.1e-05 16.9 0.2 11 71 29 88 18 109 0.67 # 104280 # 104645 # 1 # ID=1_117;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.525 1_18 - 96 HTH_29 PF13551.1 112 0.00018 14.9 0.0 1 1 8.6e-06 0.00026 14.3 0.0 8 36 33 60 27 76 0.79 # 14692 # 14979 # -1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.448 1_25 - 505 HTH_29 PF13551.1 112 0.0004 13.7 0.0 1 1 3.7e-05 0.0011 12.3 0.0 9 34 13 37 9 66 0.92 # 22449 # 23963 # 1 # ID=1_25;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.542 1_76 - 392 OrfB_Zn_ribbon PF07282.6 69 3.8e-28 90.2 0.2 1 1 7.4e-30 8.9e-28 89.0 0.2 1 69 293 363 293 363 0.98 # 63026 # 64201 # 1 # ID=1_76;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.487 1_22 - 283 DNA_pol_A_exo1 PF01612.15 176 1.5e-05 17.7 0.0 1 1 2.7e-07 3.3e-05 16.6 0.0 20 95 102 196 87 266 0.84 # 18660 # 19508 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.564 1_6 - 518 G-alpha PF00503.15 389 0.00076 11.3 0.0 1 2 0.054 6.6 -1.6 0.0 234 272 70 113 29 117 0.79 # 4018 # 5571 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.469 1_6 - 518 G-alpha PF00503.15 389 0.00076 11.3 0.0 2 2 1.9e-05 0.0023 9.8 0.0 58 87 225 254 214 325 0.84 # 4018 # 5571 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.469 1_81 - 77 UBA PF00627.26 37 0.00027 14.0 0.2 1 2 0.027 3.3 1.0 0.0 6 16 4 14 1 15 0.84 # 67724 # 67954 # 1 # ID=1_81;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.476 1_81 - 77 UBA PF00627.26 37 0.00027 14.0 0.2 2 2 2e-05 0.0025 10.9 0.0 5 22 43 60 40 60 0.87 # 67724 # 67954 # 1 # ID=1_81;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.476 1_108 - 231 OB_NTP_bind PF07717.11 114 0.00066 12.7 0.0 1 1 7.8e-06 0.00094 12.2 0.0 24 83 28 97 16 158 0.79 # 95276 # 95968 # -1 # ID=1_108;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.508 1_116 - 139 DNA_pol3_delta PF06144.8 172 2.1e-06 20.5 0.0 1 1 2e-08 2.4e-06 20.3 0.0 42 99 43 96 25 124 0.82 # 103853 # 104269 # -1 # ID=1_116;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.386 1_26 - 262 PhoH PF02562.11 205 1.5e-08 27.2 0.1 1 1 2.9e-10 3.5e-08 26.0 0.1 3 61 83 142 81 179 0.77 # 23950 # 24735 # 1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.501 1_26 - 262 AAA_5 PF07728.9 139 0.00023 14.1 0.2 1 1 4.3e-06 0.00052 12.9 0.2 1 19 101 119 101 243 0.78 # 23950 # 24735 # 1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.501 1_87 - 764 TrwB_AAD_bind PF10412.4 386 2.8e-06 19.3 0.2 1 2 9.3e-05 0.011 7.4 0.0 11 32 132 153 126 157 0.84 # 73398 # 75689 # -1 # ID=1_87;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.500 1_87 - 764 TrwB_AAD_bind PF10412.4 386 2.8e-06 19.3 0.2 2 2 3e-05 0.0036 9.0 0.1 247 332 440 525 427 555 0.88 # 73398 # 75689 # -1 # ID=1_87;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.500 1_57 - 211 TIGR01968 TIGR01968 261 1.7e-06 20.4 0.5 1 2 3.4e-06 0.00041 12.6 0.1 3 40 4 41 2 43 0.91 # 49833 # 50465 # 1 # ID=1_57;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.469 1_57 - 211 TIGR01968 TIGR01968 261 1.7e-06 20.4 0.5 2 2 0.00028 0.034 6.3 0.0 110 169 78 137 63 157 0.76 # 49833 # 50465 # 1 # ID=1_57;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.469 1_113 - 383 AAA_18 PF13238.1 129 1.8e-05 18.2 0.0 1 1 6e-07 3.6e-05 17.3 0.0 2 42 161 197 161 230 0.83 # 101040 # 102188 # -1 # ID=1_113;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.516 1_6 - 518 AAA_18 PF13238.1 129 0.00039 13.9 0.0 1 1 2.1e-05 0.0013 12.2 0.0 1 18 228 245 228 316 0.86 # 4018 # 5571 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.469 1_24 - 287 AAA_32 PF13654.1 509 0.00017 13.5 0.1 1 2 6.6e-06 0.00079 11.3 0.0 8 81 34 112 26 124 0.86 # 21478 # 22338 # 1 # ID=1_24;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.656 1_24 - 287 AAA_32 PF13654.1 509 0.00017 13.5 0.1 2 2 0.02 2.5 -0.3 0.1 472 502 255 285 242 286 0.89 # 21478 # 22338 # 1 # ID=1_24;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.656 1_63 - 228 Methyltransf_15 PF09445.5 164 0.00096 11.9 0.0 1 2 0.045 5.4 -0.3 0.0 53 79 4 29 2 32 0.90 # 54415 # 55098 # 1 # ID=1_63;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.576 1_63 - 228 Methyltransf_15 PF09445.5 164 0.00096 11.9 0.0 2 2 4.3e-05 0.0053 9.5 0.0 3 31 166 194 164 208 0.86 # 54415 # 55098 # 1 # ID=1_63;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.576 1_24 - 287 TniB PF05621.6 302 4.2e-201 659.2 5.6 1 1 3.8e-203 4.7e-201 659.0 5.6 1 285 1 285 1 286 1.00 # 21478 # 22338 # 1 # ID=1_24;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.656 1_22 - 283 TIGR01406 TIGR01406 231 3.7e-17 55.5 0.0 1 1 5.2e-19 6.3e-17 54.8 0.0 4 170 106 268 104 280 0.78 # 18660 # 19508 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.564 1_26 - 262 AAA_3 PF07726.6 131 0.00062 12.6 0.0 1 1 1.2e-05 0.0015 11.4 0.0 2 72 102 171 101 201 0.70 # 23950 # 24735 # 1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.501 1_105 - 235 DUF3810 PF12725.2 318 0.0011 11.1 0.8 1 1 1.4e-05 0.0017 10.4 0.8 90 174 106 189 95 194 0.86 # 92286 # 92990 # -1 # ID=1_105;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.504 1_113 - 383 DUF87 PF01935.12 229 0.00074 12.5 0.0 1 1 1.1e-05 0.0014 11.7 0.0 28 56 162 191 161 192 0.88 # 101040 # 102188 # -1 # ID=1_113;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.516 1_23 - 550 HTH_28 PF13518.1 52 9.6e-09 28.4 0.1 1 1 1.3e-09 4.1e-08 26.4 0.1 1 46 16 68 16 77 0.76 # 19826 # 21475 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.646 1_117 - 122 HTH_28 PF13518.1 52 2.2e-08 27.2 0.5 1 1 1.6e-09 4.7e-08 26.2 0.0 1 43 17 60 17 63 0.93 # 104280 # 104645 # 1 # ID=1_117;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.525 1_25 - 505 HTH_28 PF13518.1 52 7.6e-06 19.1 0.4 1 1 7.8e-07 2.4e-05 17.5 0.4 5 34 6 37 3 38 0.82 # 22449 # 23963 # 1 # ID=1_25;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.542 1_18 - 96 HTH_28 PF13518.1 52 0.00018 14.7 0.0 1 1 1.7e-05 0.00053 13.2 0.0 9 38 33 62 26 75 0.86 # 14692 # 14979 # -1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.448 1_26 - 262 DnaB_C PF03796.10 259 0.00018 13.6 0.0 1 1 2.4e-06 0.00029 12.9 0.0 16 55 96 135 85 158 0.90 # 23950 # 24735 # 1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.501 1_25 - 505 HTH_24 PF13412.1 48 3.9e-07 22.6 0.1 1 1 1e-08 1.3e-06 21.0 0.1 7 39 2 37 1 39 0.90 # 22449 # 23963 # 1 # ID=1_25;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.542 1_26 - 262 Sigma54_activ_2 PF14532.1 138 0.00036 13.8 0.1 1 1 7.7e-06 0.00093 12.4 0.0 3 44 79 122 77 151 0.81 # 23950 # 24735 # 1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.501 1_25 - 505 HTH_30 PF13556.1 59 0.0002 14.1 0.3 1 1 5.2e-06 0.00063 12.6 0.1 7 34 10 37 8 38 0.90 # 22449 # 23963 # 1 # ID=1_25;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.542 1_22 - 283 TIGR01298 TIGR01298 200 7.2e-07 22.0 1.0 1 1 5.7e-08 6.9e-06 18.8 1.0 93 189 167 267 97 275 0.80 # 18660 # 19508 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.564 1_82 - 84 HTH_31 PF13560.1 64 7e-07 22.6 1.7 1 1 1.9e-08 1.1e-06 21.9 1.1 3 43 3 43 2 58 0.86 # 67985 # 68236 # -1 # ID=1_82;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.560 1_25 - 505 HTH_31 PF13560.1 64 0.00053 13.4 0.2 1 1 2.2e-05 0.0014 12.1 0.2 12 43 13 44 4 54 0.82 # 22449 # 23963 # 1 # ID=1_25;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.542 1_76 - 392 HTH_OrfB_IS605 PF12323.3 46 5.1e-21 67.0 0.2 1 1 1e-22 1.2e-20 65.8 0.2 1 45 1 45 1 46 0.98 # 63026 # 64201 # 1 # ID=1_76;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.487 1_25 - 505 HTH_36 PF13730.1 55 1.4e-05 18.4 0.0 1 1 2.9e-07 3.5e-05 17.1 0.0 26 47 16 37 2 38 0.88 # 22449 # 23963 # 1 # ID=1_25;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.542 1_6 - 518 T2SE PF00437.15 272 2.9e-41 134.3 0.1 1 1 9.6e-43 5.8e-41 133.3 0.0 10 271 97 373 90 374 0.85 # 4018 # 5571 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.469 1_113 - 383 T2SE PF00437.15 272 9.7e-36 116.2 0.0 1 1 2.4e-37 1.5e-35 115.6 0.0 120 269 149 306 127 309 0.88 # 101040 # 102188 # -1 # ID=1_113;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.516 1_23 - 550 HTH_Tnp_Mu_2 PF09039.6 108 1.4e-05 18.0 0.0 1 1 2.7e-07 3.3e-05 16.8 0.0 37 101 90 153 73 156 0.91 # 19826 # 21475 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.646 1_59 - 325 StbA PF06406.6 318 1.7e-136 447.4 1.2 1 1 1.6e-138 1.9e-136 447.3 1.2 1 317 1 319 1 320 0.99 # 51078 # 52052 # 1 # ID=1_59;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.459 1_26 - 262 NACHT PF05729.7 166 0.0015 11.4 2.1 1 2 5.9e-05 0.0071 9.2 0.3 3 23 102 122 100 148 0.84 # 23950 # 24735 # 1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.501 1_26 - 262 NACHT PF05729.7 166 0.0015 11.4 2.1 2 2 0.012 1.4 1.7 0.1 80 127 156 200 139 221 0.76 # 23950 # 24735 # 1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.501 1_113 - 383 AAA_17 PF13207.1 121 2.2e-05 18.4 0.1 1 1 7.1e-06 0.00029 14.9 0.0 3 47 161 208 161 251 0.76 # 101040 # 102188 # -1 # ID=1_113;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.516 1_6 - 518 AAA_17 PF13207.1 121 2.6e-05 18.2 0.2 1 1 3.1e-06 0.00012 16.0 0.0 1 24 227 255 227 345 0.72 # 4018 # 5571 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.469 1_26 - 262 AAA_17 PF13207.1 121 0.00013 15.9 0.0 1 1 4.7e-06 0.00019 15.4 0.0 2 38 102 133 101 232 0.74 # 23950 # 24735 # 1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.501 1_32 - 510 DZR PF12773.2 50 0.0027 10.7 4.0 1 2 0.00039 0.048 6.8 3.1 15 36 84 107 71 117 0.55 # 28440 # 29969 # -1 # ID=1_32;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.697 1_32 - 510 DZR PF12773.2 50 0.0027 10.7 4.0 2 2 0.014 1.7 1.8 0.0 13 22 459 468 452 488 0.76 # 28440 # 29969 # -1 # ID=1_32;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.697 1_31 - 412 Transposase_mut PF00872.13 381 3.5e-127 417.2 0.0 1 1 3.6e-129 4.4e-127 416.8 0.0 18 380 30 387 18 388 0.96 # 26937 # 28172 # -1 # ID=1_31;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.673 1_21 - 87 TIGR02211 TIGR02211 221 0.00023 13.6 0.0 1 1 1.9e-06 0.00023 13.6 0.0 121 168 15 66 1 80 0.81 # 18360 # 18620 # 1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.548 1_26 - 262 AAA_25 PF13481.1 194 0.00013 14.6 0.0 1 1 5.4e-06 0.00022 13.8 0.0 29 57 95 123 76 170 0.86 # 23950 # 24735 # 1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.501 1_113 - 383 AAA_25 PF13481.1 194 0.00024 13.7 0.0 1 1 1.1e-05 0.00043 12.9 0.0 24 58 148 182 124 207 0.78 # 101040 # 102188 # -1 # ID=1_113;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.516 1_6 - 518 AAA_25 PF13481.1 194 0.00034 13.2 0.1 1 2 0.00013 0.0053 9.3 0.0 25 65 217 260 200 270 0.72 # 4018 # 5571 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.469 1_6 - 518 AAA_25 PF13481.1 194 0.00034 13.2 0.1 2 2 0.058 2.3 0.7 0.0 153 190 297 337 292 340 0.74 # 4018 # 5571 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.469 1_26 - 262 RuvB_N PF05496.7 234 0.00063 12.0 0.0 1 1 7.1e-06 0.00086 11.5 0.0 48 75 97 124 45 170 0.84 # 23950 # 24735 # 1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.501 1_6 - 518 AAA_14 PF13173.1 128 0.00095 12.3 0.0 1 1 3.7e-05 0.0045 10.1 0.0 5 30 228 254 225 286 0.80 # 4018 # 5571 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.469 1_18 - 96 HTH_Tnp_ISL3 PF13542.1 52 7.3e-05 15.1 0.0 1 1 1.9e-06 0.00012 14.5 0.0 29 50 38 59 34 60 0.89 # 14692 # 14979 # -1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.448 1_117 - 122 HTH_Tnp_ISL3 PF13542.1 52 0.00042 12.7 1.6 1 1 1.4e-05 0.00087 11.7 0.1 7 42 8 44 8 46 0.92 # 104280 # 104645 # 1 # ID=1_117;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.525 1_25 - 505 MerR PF00376.18 38 0.00015 14.5 0.1 1 1 2.9e-06 0.00035 13.3 0.1 1 28 17 43 17 48 0.85 # 22449 # 23963 # 1 # ID=1_25;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.542 1_26 - 262 AAA_33 PF13671.1 143 0.00044 13.3 0.2 1 1 8.9e-06 0.0011 12.1 0.2 2 36 102 142 102 255 0.67 # 23950 # 24735 # 1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.501 1_117 - 122 CENP-B_N PF04218.8 53 3.8e-06 19.5 0.0 1 1 6e-08 7.2e-06 18.6 0.0 3 44 9 51 8 55 0.86 # 104280 # 104645 # 1 # ID=1_117;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.525 1_113 - 383 RNA_helicase PF00910.17 107 0.00012 15.5 0.0 1 1 1.9e-06 0.00023 14.5 0.0 2 28 161 187 160 205 0.83 # 101040 # 102188 # -1 # ID=1_113;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.516 1_113 - 383 ATP_bind_1 PF03029.12 238 5.6e-05 15.9 0.0 1 1 7.2e-07 8.7e-05 15.3 0.0 1 23 162 184 162 197 0.86 # 101040 # 102188 # -1 # ID=1_113;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.516 1_31 - 412 DDE_Tnp_IS240 PF13610.1 140 3.4e-05 17.0 0.0 1 2 0.0084 1 2.5 0.0 16 90 189 265 185 306 0.74 # 26937 # 28172 # -1 # ID=1_31;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.673 1_31 - 412 DDE_Tnp_IS240 PF13610.1 140 3.4e-05 17.0 0.0 2 2 1e-05 0.0012 12.0 0.0 90 126 338 374 318 384 0.88 # 26937 # 28172 # -1 # ID=1_31;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.673 1_6 - 518 DAP3 PF10236.4 309 0.00075 11.6 0.0 1 1 1.2e-05 0.0014 10.7 0.0 21 42 223 244 215 253 0.86 # 4018 # 5571 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.469 1_59 - 325 MreB_Mbl PF06723.8 327 0.00018 13.3 0.6 1 2 0.00012 0.015 7.0 0.1 123 162 142 183 116 193 0.73 # 51078 # 52052 # 1 # ID=1_59;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.459 1_59 - 325 MreB_Mbl PF06723.8 327 0.00018 13.3 0.6 2 2 0.00056 0.068 4.8 0.1 272 318 274 320 236 324 0.67 # 51078 # 52052 # 1 # ID=1_59;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.459 1_25 - 505 HTH_17 PF12728.2 51 0.00053 13.5 0.0 1 1 1.8e-05 0.0022 11.5 0.0 3 25 17 39 17 53 0.90 # 22449 # 23963 # 1 # ID=1_25;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.542 1_32 - 510 Zn-ribbon_8 PF09723.5 42 0.0014 11.8 7.1 1 2 0.00087 0.1 5.8 4.8 8 35 84 109 83 114 0.88 # 28440 # 29969 # -1 # ID=1_32;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.697 1_32 - 510 Zn-ribbon_8 PF09723.5 42 0.0014 11.8 7.1 2 2 0.0011 0.14 5.4 0.0 22 38 454 469 447 473 0.77 # 28440 # 29969 # -1 # ID=1_32;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.697 1_25 - 505 HTH_11 PF08279.7 55 0.00058 12.7 0.2 1 1 1.3e-05 0.0016 11.3 0.1 16 37 16 37 11 38 0.89 # 22449 # 23963 # 1 # ID=1_25;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.542 1_25 - 505 TrmB PF01978.14 68 0.00025 14.0 0.0 1 1 8e-06 0.00097 12.1 0.1 22 45 15 38 13 38 0.92 # 22449 # 23963 # 1 # ID=1_25;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.542 1_25 - 505 LacI PF00356.16 46 0.00024 13.9 0.0 1 1 4.1e-06 0.00049 12.9 0.0 1 23 17 39 17 44 0.91 # 22449 # 23963 # 1 # ID=1_25;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.542 1_22 - 283 RNase_T PF00929.19 164 4.1e-26 85.4 0.0 1 1 4.3e-28 5.2e-26 85.0 0.0 1 163 105 262 105 263 0.95 # 18660 # 19508 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.564 1_100 - 1015 AAA_10 PF12846.2 304 8.9e-30 97.3 0.0 1 1 6.9e-31 2.1e-29 96.0 0.0 8 302 502 897 498 898 0.89 # 87134 # 90178 # -1 # ID=1_100;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.510 1_87 - 764 AAA_10 PF12846.2 304 3.1e-05 16.6 1.0 1 1 3.1e-06 9.5e-05 15.1 1.0 2 287 137 501 136 514 0.62 # 73398 # 75689 # -1 # ID=1_87;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.500 1_6 - 518 AAA_10 PF12846.2 304 0.00027 13.6 0.0 1 1 1.7e-05 0.00051 12.7 0.0 4 30 228 256 226 320 0.81 # 4018 # 5571 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.469 1_113 - 383 AAA_10 PF12846.2 304 0.00062 12.4 0.0 1 1 4e-05 0.0012 11.4 0.0 2 21 158 177 157 196 0.83 # 101040 # 102188 # -1 # ID=1_113;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.516 1_25 - 505 HTH_20 PF12840.2 61 0.00024 14.1 0.2 1 1 5.5e-06 0.00067 12.7 0.0 13 45 1 36 1 38 0.94 # 22449 # 23963 # 1 # ID=1_25;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.542 1_57 - 211 ArsA_ATPase PF02374.10 305 0.00035 12.8 1.2 1 2 7.6e-06 0.00092 11.4 0.8 5 32 7 34 1 48 0.85 # 49833 # 50465 # 1 # ID=1_57;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.469 1_57 - 211 ArsA_ATPase PF02374.10 305 0.00035 12.8 1.2 2 2 0.04 4.8 -0.8 0.0 108 134 57 87 35 89 0.66 # 49833 # 50465 # 1 # ID=1_57;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.469 1_57 - 211 AAA_31 PF13614.1 157 1.1e-06 21.8 0.0 1 2 8.4e-07 0.0001 15.5 0.0 2 44 4 46 4 61 0.86 # 49833 # 50465 # 1 # ID=1_57;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.469 1_57 - 211 AAA_31 PF13614.1 157 1.1e-06 21.8 0.0 2 2 0.0023 0.28 4.3 0.0 112 151 72 112 57 117 0.82 # 49833 # 50465 # 1 # ID=1_57;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.469 1_29 - 280 Pterin_bind PF00809.17 210 3.1e-58 189.7 0.0 1 1 3e-60 3.7e-58 189.5 0.0 1 210 7 216 7 216 0.98 # 25539 # 26378 # -1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.617 1_81 - 77 Yae1_N PF09811.4 39 1.4e-08 27.4 10.4 1 1 2.9e-10 3.5e-08 26.1 10.4 5 30 11 36 8 40 0.63 # 67724 # 67954 # 1 # ID=1_81;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.476 1_31 - 412 MULE PF10551.4 93 7.7e-13 41.7 0.0 1 1 1.8e-14 2.2e-12 40.2 0.0 16 91 193 268 181 270 0.83 # 26937 # 28172 # -1 # ID=1_31;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.673 1_26 - 262 IstB_IS21 PF01695.12 178 3.7e-69 224.8 0.1 1 1 4.1e-71 4.9e-69 224.4 0.1 2 177 55 230 54 231 0.98 # 23950 # 24735 # 1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.501 1_26 - 262 AAA_11 PF13086.1 236 0.00055 12.7 0.3 1 1 8.7e-06 0.0011 11.8 0.3 6 44 89 142 82 260 0.72 # 23950 # 24735 # 1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.501 1_70 - 176 SSB PF00436.20 104 1.2e-40 130.7 0.3 1 1 1.3e-42 1.6e-40 130.4 0.3 1 101 6 109 6 112 0.96 # 58856 # 59383 # 1 # ID=1_70;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.597 1_118 - 302 HTH_21 PF13276.1 60 3.1e-19 62.0 1.4 1 2 2.3e-19 2.8e-17 55.7 0.6 6 57 49 106 44 109 0.80 # 104603 # 105508 # 1 # ID=1_118;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.550 1_118 - 302 HTH_21 PF13276.1 60 3.1e-19 62.0 1.4 2 2 0.0023 0.28 4.5 0.0 11 34 264 289 255 301 0.77 # 104603 # 105508 # 1 # ID=1_118;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.550 # # Program: hmmsearch # Version: 3.1b1 (May 2013) # Pipeline mode: SEARCH # Query file: /tmp/1976cf10-36f9-4982-93fe-d66bfab05be7 # Target file: checkm_output/bins/pm354/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm354/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/1976cf10-36f9-4982-93fe-d66bfab05be7 checkm_output/bins/pm354/genes.faa # Current dir: /mnt/data/azomer/reads-for-assembly/files/output/allcontigs/output_1512029421078392887 # Date: Thu Nov 30 10:03:42 2017 # [ok]