# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_41 - 294 RepC PF06504.6 283 9.2e-165 539.4 0.0 1 1 9.7e-167 1.1e-164 539.2 0.0 5 282 3 278 1 279 0.99 # 33370 # 34251 # 1 # ID=1_41;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.591 1_52 - 111 HTH_IclR PF09339.5 52 9.1e-07 21.5 0.2 1 1 3.3e-08 3.6e-06 19.6 0.2 7 49 20 63 5 66 0.87 # 41306 # 41638 # -1 # ID=1_52;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.622 1_89 - 383 ABC_tran PF00005.22 137 2.3e-05 17.7 0.0 1 1 8.1e-07 4.4e-05 16.8 0.0 15 37 161 183 150 212 0.84 # 77339 # 78487 # -1 # ID=1_89;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.560 1_99 - 503 ABC_tran PF00005.22 137 0.00038 13.8 0.0 1 1 1.2e-05 0.00067 13.0 0.0 12 37 230 255 224 364 0.90 # 86709 # 88217 # -1 # ID=1_99;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.558 1_10 - 424 HHH_5 PF14520.1 60 0.00035 13.8 0.0 1 1 8.5e-06 0.00092 12.5 0.0 9 37 184 212 172 229 0.92 # 7680 # 8951 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.517 1_82 - 238 AAA_27 PF13514.1 1111 0.00038 11.2 2.7 1 1 4.5e-06 0.00049 10.8 2.7 316 391 97 171 94 182 0.90 # 68817 # 69530 # -1 # ID=1_82;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.592 1_89 - 383 Sigma54_activat PF00158.21 168 0.00071 12.1 0.0 1 1 1.3e-05 0.0014 11.2 0.0 26 47 161 182 145 193 0.84 # 77339 # 78487 # -1 # ID=1_89;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.560 1_89 - 383 FtsK_SpoIIIE PF01580.13 205 0.00077 12.0 0.0 1 1 1.2e-05 0.0013 11.2 0.0 40 60 159 179 128 231 0.80 # 77339 # 78487 # -1 # ID=1_89;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.560 1_9 - 209 MobB PF03205.9 140 6.2e-05 15.8 0.1 1 1 1.6e-06 0.00018 14.3 0.0 10 42 11 41 1 46 0.79 # 6842 # 7468 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.429 1_52 - 111 HTH_34 PF13601.1 80 0.00011 15.2 0.0 1 1 1.6e-06 0.00018 14.6 0.0 2 48 18 66 17 69 0.92 # 41306 # 41638 # -1 # ID=1_52;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.622 1_52 - 111 MarR PF01047.17 59 4.3e-05 16.2 0.0 1 1 8.5e-07 9.2e-05 15.2 0.0 6 51 19 66 15 68 0.88 # 41306 # 41638 # -1 # ID=1_52;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.622 1_44 - 79 TIGR03302 TIGR03302 239 0.0001 14.6 0.3 1 1 1e-06 0.00011 14.4 0.3 3 53 4 52 2 69 0.83 # 36405 # 36641 # 1 # ID=1_44;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.519 1_65 - 227 HTH_39 PF14090.1 70 2.7e-07 23.1 0.0 1 1 6.4e-09 7e-07 21.7 0.0 8 67 167 226 162 226 0.91 # 53670 # 54350 # 1 # ID=1_65;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.532 1_25 - 199 TilS_C PF11734.3 74 0.00018 13.7 0.0 1 1 5.1e-06 0.00056 12.2 0.0 29 45 7 23 6 28 0.88 # 19699 # 20295 # 1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.554 1_52 - 111 TetR_N PF00440.18 47 7.4e-05 15.4 0.6 1 2 0.066 7.2 -0.5 0.3 18 30 3 15 3 17 0.73 # 41306 # 41638 # -1 # ID=1_52;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.622 1_52 - 111 TetR_N PF00440.18 47 7.4e-05 15.4 0.6 2 2 2.6e-06 0.00028 13.6 0.0 6 36 22 52 19 54 0.95 # 41306 # 41638 # -1 # ID=1_52;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.622 1_99 - 503 AAA_19 PF13245.1 76 1.2e-06 21.2 0.0 1 1 5.8e-08 3.2e-06 19.9 0.0 1 36 219 255 219 272 0.76 # 86709 # 88217 # -1 # ID=1_99;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.558 1_9 - 209 AAA_19 PF13245.1 76 0.00032 13.5 0.1 1 2 0.00019 0.011 8.6 0.0 20 48 11 35 9 44 0.84 # 6842 # 7468 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.429 1_9 - 209 AAA_19 PF13245.1 76 0.00032 13.5 0.1 2 2 0.021 1.2 2.1 0.0 42 63 135 158 118 184 0.76 # 6842 # 7468 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.429 1_9 - 209 CbiA PF01656.18 195 1.9e-22 72.6 0.0 1 1 3.1e-24 3.3e-22 71.8 0.0 1 158 3 141 3 179 0.75 # 6842 # 7468 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.429 1_71 - 529 Sigma70_r4_2 PF08281.7 54 0.00015 14.2 0.4 1 1 6.7e-06 0.00073 12.1 0.4 3 51 140 192 138 195 0.86 # 56288 # 57874 # -1 # ID=1_71;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.395 1_9 - 209 YhjQ PF06564.7 244 2.5e-05 16.7 0.3 1 2 1.8e-06 0.0002 13.8 0.3 4 38 3 37 1 50 0.89 # 6842 # 7468 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.429 1_9 - 209 YhjQ PF06564.7 244 2.5e-05 16.7 0.3 2 2 0.029 3.2 0.0 0.0 108 144 69 103 44 113 0.78 # 6842 # 7468 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.429 1_89 - 383 AAA_23 PF13476.1 202 1.9e-05 18.1 0.0 1 1 6.7e-07 3.6e-05 17.1 0.0 20 46 158 185 144 219 0.81 # 77339 # 78487 # -1 # ID=1_89;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.560 1_99 - 503 AAA_23 PF13476.1 202 8.3e-05 16.0 0.0 1 1 2.9e-06 0.00016 15.1 0.0 20 37 230 247 225 262 0.90 # 86709 # 88217 # -1 # ID=1_99;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.558 1_15 - 168 Methyltransf_26 PF13659.1 117 5.5e-06 19.5 0.0 1 1 7.4e-08 8.1e-06 18.9 0.0 4 44 107 146 104 162 0.82 # 11489 # 11992 # 1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.563 1_99 - 503 Zeta_toxin PF06414.7 201 0.00091 11.4 0.0 1 1 1.4e-05 0.0016 10.6 0.0 18 39 231 252 216 259 0.79 # 86709 # 88217 # -1 # ID=1_99;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.558 1_99 - 503 AAA_30 PF13604.1 196 7.3e-09 28.5 0.0 1 1 1.2e-10 1.4e-08 27.6 0.0 2 45 213 256 212 263 0.92 # 86709 # 88217 # -1 # ID=1_99;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.558 1_25 - 199 TIGR02433 TIGR02433 47 0.00026 13.2 0.1 1 1 7.7e-06 0.00084 11.6 0.0 30 45 8 23 7 25 0.91 # 19699 # 20295 # 1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.554 1_59 - 768 TraG-D_C PF12696.2 128 5.4e-08 25.8 0.2 1 1 5e-10 5.4e-08 25.8 0.2 1 90 437 525 437 558 0.83 # 46692 # 48995 # -1 # ID=1_59;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.542 1_9 - 209 MipZ PF09140.6 261 2e-21 69.2 0.5 1 2 1.2e-12 1.3e-10 33.8 0.0 2 53 2 52 1 60 0.89 # 6842 # 7468 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.429 1_9 - 209 MipZ PF09140.6 261 2e-21 69.2 0.5 2 2 1.6e-12 1.7e-10 33.4 0.0 87 140 65 118 58 128 0.92 # 6842 # 7468 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.429 1_71 - 529 Sigma70_r4 PF04545.11 50 2.9e-12 38.8 0.1 1 1 2.2e-13 1.2e-11 36.8 0.1 6 46 150 193 144 197 0.92 # 56288 # 57874 # -1 # ID=1_71;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.395 1_42 - 63 Sigma70_r4 PF04545.11 50 0.00034 13.0 0.2 1 1 1e-05 0.00056 12.3 0.2 18 35 40 57 21 58 0.85 # 35284 # 35472 # 1 # ID=1_42;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.524 1_22 - 653 KorB PF08535.5 93 2.1e-05 17.7 0.0 1 1 6e-07 6.5e-05 16.1 0.0 2 43 152 193 151 204 0.93 # 16539 # 18497 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.593 1_52 - 111 Rrf2 PF02082.15 83 8.8e-06 18.9 0.0 1 1 1.7e-07 1.9e-05 17.8 0.0 23 59 31 66 3 69 0.83 # 41306 # 41638 # -1 # ID=1_52;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.622 1_9 - 209 TIGR00064 TIGR00064 279 0.00025 13.0 0.5 1 2 0.00073 0.08 4.8 0.1 89 116 11 38 1 45 0.88 # 6842 # 7468 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.429 1_9 - 209 TIGR00064 TIGR00064 279 0.00025 13.0 0.5 2 2 0.00024 0.027 6.4 0.0 153 175 68 90 60 99 0.82 # 6842 # 7468 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.429 1_15 - 168 N6_N4_Mtase PF01555.13 231 1.2e-24 80.0 0.0 1 1 3.2e-26 3.5e-24 78.5 0.0 142 228 23 140 2 143 0.71 # 11489 # 11992 # 1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.563 1_99 - 503 AAA_16 PF13191.1 185 3.5e-05 16.9 0.0 1 1 1.1e-06 6.1e-05 16.1 0.0 13 52 222 263 216 369 0.84 # 86709 # 88217 # -1 # ID=1_99;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.558 1_89 - 383 AAA_16 PF13191.1 185 3.9e-05 16.7 0.1 1 1 2e-06 0.00011 15.2 0.1 25 62 158 192 148 338 0.76 # 77339 # 78487 # -1 # ID=1_89;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.560 1_89 - 383 AAA_22 PF13401.1 131 4.1e-06 20.0 0.0 1 1 1.5e-07 8.3e-06 19.0 0.0 3 48 156 198 153 233 0.77 # 77339 # 78487 # -1 # ID=1_89;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.560 1_99 - 503 AAA_22 PF13401.1 131 5.7e-06 19.6 0.0 1 1 2e-07 1.1e-05 18.6 0.0 4 49 229 281 225 330 0.84 # 86709 # 88217 # -1 # ID=1_99;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.558 1_33 - 283 Methyltransf_27 PF13708.1 194 2.9e-67 219.0 0.0 1 1 3.6e-69 3.9e-67 218.5 0.0 2 194 85 278 84 278 0.96 # 25380 # 26228 # 1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.504 1_99 - 503 AAA_29 PF13555.1 62 1.7e-05 17.3 0.0 1 1 7.9e-07 4.3e-05 16.1 0.0 20 40 227 246 219 255 0.84 # 86709 # 88217 # -1 # ID=1_99;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.558 1_89 - 383 AAA_29 PF13555.1 62 2.4e-05 16.9 0.0 1 1 1.1e-06 5.9e-05 15.6 0.0 25 43 159 177 149 185 0.84 # 77339 # 78487 # -1 # ID=1_89;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.560 1_52 - 111 B-block_TFIIIC PF04182.7 75 0.0011 11.8 0.0 1 1 1.3e-05 0.0014 11.6 0.0 4 52 18 66 15 84 0.90 # 41306 # 41638 # -1 # ID=1_52;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.622 1_9 - 209 SRP54 PF00448.17 196 2.7e-07 23.2 0.1 1 1 1.5e-08 1.6e-06 20.7 0.1 4 98 2 91 1 134 0.80 # 6842 # 7468 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.429 1_55 - 498 A2L_zn_ribbon PF08792.5 33 0.009 8.6 3.6 1 2 0.004 0.44 3.2 0.5 5 29 75 100 73 101 0.85 # 42955 # 44448 # 1 # ID=1_55;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.608 1_55 - 498 A2L_zn_ribbon PF08792.5 33 0.009 8.6 3.6 2 2 0.00068 0.074 5.7 0.1 2 13 439 450 439 453 0.85 # 42955 # 44448 # 1 # ID=1_55;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.608 1_41 - 294 GntR PF00392.16 64 0.00039 12.9 0.5 1 2 0.075 8.1 -0.9 0.0 40 51 108 119 102 120 0.80 # 33370 # 34251 # 1 # ID=1_41;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.591 1_41 - 294 GntR PF00392.16 64 0.00039 12.9 0.5 2 2 1.6e-05 0.0017 10.9 0.1 31 55 238 262 235 268 0.87 # 33370 # 34251 # 1 # ID=1_41;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.591 1_32 - 84 HTH_3 PF01381.17 55 4.3e-05 16.4 0.0 1 1 1e-06 0.00011 15.1 0.0 1 34 6 39 6 45 0.90 # 24548 # 24799 # -1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.560 1_99 - 503 Rad17 PF03215.10 519 0.0013 10.4 0.0 1 1 1.8e-05 0.002 9.8 0.0 42 69 226 253 217 264 0.81 # 86709 # 88217 # -1 # ID=1_99;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.558 1_22 - 653 HTH_23 PF13384.1 50 1.9e-06 20.5 0.0 1 1 2.9e-07 7.9e-06 18.5 0.0 13 40 149 176 143 180 0.91 # 16539 # 18497 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.593 1_53 - 246 HTH_23 PF13384.1 50 1.3e-05 17.8 0.4 1 1 4.9e-07 1.3e-05 17.8 0.4 2 37 171 206 170 216 0.90 # 41786 # 42523 # 1 # ID=1_53;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.675 1_32 - 84 HTH_23 PF13384.1 50 6.9e-05 15.5 0.2 1 1 1.4e-05 0.00038 13.2 0.1 17 33 14 30 6 38 0.86 # 24548 # 24799 # -1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.560 1_71 - 529 HTH_23 PF13384.1 50 0.00025 13.8 0.1 1 1 9e-06 0.00025 13.8 0.1 4 43 150 191 147 198 0.80 # 56288 # 57874 # -1 # ID=1_71;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.395 1_9 - 209 Fer4_NifH PF00142.13 273 8.1e-05 14.9 0.2 1 1 2.3e-06 0.00025 13.3 0.0 8 38 9 39 2 46 0.89 # 6842 # 7468 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.429 1_53 - 246 HTH_7 PF02796.10 45 8.8e-08 25.0 0.1 1 1 1.9e-09 2.1e-07 23.8 0.1 8 44 173 209 168 210 0.87 # 41786 # 42523 # 1 # ID=1_53;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.675 1_55 - 498 Ribosomal_S27e PF01667.12 55 0.00057 12.5 1.1 1 1 1.4e-05 0.0015 11.1 1.1 5 33 71 99 68 104 0.90 # 42955 # 44448 # 1 # ID=1_55;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.608 1_32 - 84 HTH_19 PF12844.2 64 9.4e-05 15.5 0.0 1 1 1.2e-06 0.00013 15.1 0.0 7 53 9 56 5 67 0.87 # 24548 # 24799 # -1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.560 1_55 - 498 zinc_ribbon_4 PF13717.1 36 0.025 7.4 5.2 1 2 0.00049 0.054 6.3 0.1 2 14 73 85 73 87 0.84 # 42955 # 44448 # 1 # ID=1_55;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.608 1_55 - 498 zinc_ribbon_4 PF13717.1 36 0.025 7.4 5.2 2 2 0.0064 0.69 2.8 0.0 5 14 95 104 94 111 0.81 # 42955 # 44448 # 1 # ID=1_55;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.608 1_32 - 84 DUF1870 PF08965.5 118 0.00027 13.6 1.0 1 1 3e-06 0.00033 13.4 1.0 1 75 1 78 1 82 0.69 # 24548 # 24799 # -1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.560 1_89 - 383 NB-ARC PF00931.17 287 0.00032 12.6 0.0 1 2 9.7e-06 0.0011 10.9 0.0 18 49 156 185 145 192 0.81 # 77339 # 78487 # -1 # ID=1_89;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.560 1_89 - 383 NB-ARC PF00931.17 287 0.00032 12.6 0.0 2 2 0.069 7.6 -1.7 0.0 208 236 331 357 326 367 0.70 # 77339 # 78487 # -1 # ID=1_89;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.560 1_22 - 653 HTH_29 PF13551.1 112 0.00037 13.7 0.0 1 1 1e-05 0.0011 12.2 0.0 4 37 145 178 142 234 0.85 # 16539 # 18497 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.593 1_59 - 768 TrwB_AAD_bind PF10412.4 386 5.9e-07 21.4 0.2 1 2 0.00021 0.023 6.3 0.0 11 32 132 153 126 164 0.80 # 46692 # 48995 # -1 # ID=1_59;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.542 1_59 - 768 TrwB_AAD_bind PF10412.4 386 5.9e-07 21.4 0.2 2 2 2.5e-06 0.00027 12.6 0.1 260 332 452 525 435 578 0.75 # 46692 # 48995 # -1 # ID=1_59;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.542 1_9 - 209 TIGR01968 TIGR01968 261 1.8e-11 36.5 0.8 1 2 6.4e-11 7e-09 28.1 0.5 3 39 2 38 1 42 0.97 # 6842 # 7468 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.429 1_9 - 209 TIGR01968 TIGR01968 261 1.8e-11 36.5 0.8 2 2 0.00018 0.02 6.9 0.0 100 135 65 100 60 149 0.83 # 6842 # 7468 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.429 1_89 - 383 AAA_18 PF13238.1 129 0.00012 15.5 0.0 1 1 3.9e-06 0.00021 14.6 0.0 2 38 161 193 161 238 0.71 # 77339 # 78487 # -1 # ID=1_89;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.560 1_99 - 503 AAA_18 PF13238.1 129 0.0012 12.2 0.1 1 1 5.3e-05 0.0029 11.0 0.1 1 18 232 249 232 267 0.87 # 86709 # 88217 # -1 # ID=1_99;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.558 1_10 - 424 IMS_HHH PF11798.3 32 5e-09 28.9 0.3 1 1 1.3e-10 1.5e-08 27.5 0.3 3 32 172 201 170 201 0.93 # 7680 # 8951 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.517 1_59 - 768 DUF87 PF01935.12 229 0.00033 13.5 0.1 1 2 5e-05 0.0027 10.5 0.0 16 40 130 153 120 168 0.80 # 46692 # 48995 # -1 # ID=1_59;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.542 1_59 - 768 DUF87 PF01935.12 229 0.00033 13.5 0.1 2 2 0.082 4.5 0.0 0.1 111 173 640 701 622 729 0.63 # 46692 # 48995 # -1 # ID=1_59;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.542 1_89 - 383 DUF87 PF01935.12 229 0.0006 12.7 0.0 1 1 2.1e-05 0.0011 11.8 0.0 28 46 162 180 161 192 0.87 # 77339 # 78487 # -1 # ID=1_89;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.560 1_53 - 246 HTH_28 PF13518.1 52 0.00034 13.7 0.7 1 1 3.1e-06 0.00034 13.7 0.7 1 33 175 207 175 209 0.95 # 41786 # 42523 # 1 # ID=1_53;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.675 1_73 - 720 Bac_GDH PF05088.7 1528 0.0011 9.4 0.1 1 1 1.4e-05 0.0015 8.9 0.1 365 464 258 363 248 375 0.80 # 58883 # 61042 # -1 # ID=1_73;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.527 1_52 - 111 HTH_24 PF13412.1 48 0.00016 14.1 0.0 1 1 2.7e-06 0.00029 13.3 0.0 20 47 35 62 25 63 0.89 # 41306 # 41638 # -1 # ID=1_52;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.622 1_99 - 503 DEAD PF00270.24 169 0.0012 11.4 0.0 1 1 1.6e-05 0.0017 10.8 0.0 3 39 216 254 214 340 0.82 # 86709 # 88217 # -1 # ID=1_99;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.558 1_32 - 84 HTH_31 PF13560.1 64 6.3e-07 22.6 1.7 1 1 9.5e-09 1e-06 21.9 1.1 3 43 3 43 2 58 0.86 # 24548 # 24799 # -1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.560 1_41 - 294 HTH_36 PF13730.1 55 0.0012 12.1 0.0 1 1 2.5e-05 0.0027 10.9 0.0 23 55 230 261 224 261 0.84 # 33370 # 34251 # 1 # ID=1_41;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.591 1_99 - 503 T2SE PF00437.15 272 3e-38 124.2 0.0 1 1 8.5e-40 4.6e-38 123.6 0.0 66 269 161 378 143 381 0.87 # 86709 # 88217 # -1 # ID=1_99;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.558 1_89 - 383 T2SE PF00437.15 272 8.3e-35 112.9 0.0 1 1 2.2e-36 1.2e-34 112.5 0.0 111 261 144 292 23 309 0.79 # 77339 # 78487 # -1 # ID=1_89;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.560 1_89 - 383 NACHT PF05729.7 166 0.0007 12.3 0.0 1 1 1.4e-05 0.0015 11.2 0.0 4 30 161 187 159 193 0.82 # 77339 # 78487 # -1 # ID=1_89;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.560 1_9 - 209 AAA_17 PF13207.1 121 1.7e-05 18.7 0.0 1 1 1.2e-06 4.5e-05 17.3 0.0 9 77 11 84 9 205 0.75 # 6842 # 7468 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.429 1_99 - 503 AAA_17 PF13207.1 121 5.5e-05 17.0 0.0 1 1 4.1e-06 0.00015 15.6 0.0 1 32 231 264 231 361 0.79 # 86709 # 88217 # -1 # ID=1_99;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.558 1_89 - 383 AAA_17 PF13207.1 121 0.00043 14.2 0.0 1 1 2.7e-05 0.00099 13.0 0.0 3 22 161 180 161 245 0.81 # 77339 # 78487 # -1 # ID=1_89;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.560 1_40 - 276 AAA_25 PF13481.1 194 5.1e-36 116.9 0.0 1 1 2.6e-37 7e-36 116.4 0.0 15 193 9 180 3 181 0.87 # 32556 # 33383 # 1 # ID=1_40;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.557 1_89 - 383 AAA_25 PF13481.1 194 9.3e-06 18.2 0.0 1 1 5.6e-07 1.5e-05 17.4 0.0 21 55 146 179 127 219 0.78 # 77339 # 78487 # -1 # ID=1_89;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.560 1_9 - 209 AAA_25 PF13481.1 194 0.00013 14.4 0.1 1 1 1.2e-05 0.00034 13.1 0.0 42 87 10 44 3 90 0.78 # 6842 # 7468 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.429 1_99 - 503 AAA_25 PF13481.1 194 0.00015 14.2 0.0 1 1 1.5e-05 0.0004 12.8 0.0 19 64 214 260 202 276 0.79 # 86709 # 88217 # -1 # ID=1_99;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.558 1_99 - 503 AAA_14 PF13173.1 128 0.0012 11.8 0.0 1 1 2.2e-05 0.0024 10.8 0.0 3 30 230 255 228 267 0.86 # 86709 # 88217 # -1 # ID=1_99;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.558 1_9 - 209 VirC1 PF07015.6 231 3.7e-09 29.0 0.0 1 1 7.1e-11 7.8e-09 27.9 0.0 3 172 2 164 1 206 0.74 # 6842 # 7468 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.429 1_52 - 111 Penicillinase_R PF03965.11 115 0.0011 12.1 0.0 1 1 1.2e-05 0.0013 11.8 0.0 26 70 37 81 15 99 0.78 # 41306 # 41638 # -1 # ID=1_52;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.622 1_99 - 503 AAA_33 PF13671.1 143 0.00075 12.4 0.0 1 1 1.6e-05 0.0018 11.2 0.0 1 19 231 249 231 333 0.71 # 86709 # 88217 # -1 # ID=1_99;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.558 1_89 - 383 RNA_helicase PF00910.17 107 5.9e-05 16.3 0.0 1 1 1e-06 0.00011 15.4 0.0 2 33 161 190 160 201 0.82 # 77339 # 78487 # -1 # ID=1_89;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.560 1_55 - 498 zinc_ribbon_5 PF13719.1 37 0.0023 10.6 2.7 1 2 0.00031 0.034 6.8 0.0 2 14 73 85 72 87 0.83 # 42955 # 44448 # 1 # ID=1_55;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.608 1_55 - 498 zinc_ribbon_5 PF13719.1 37 0.0023 10.6 2.7 2 2 0.0048 0.53 3.0 0.0 5 14 95 104 94 113 0.81 # 42955 # 44448 # 1 # ID=1_55;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.608 1_39 - 74 HTH_17 PF12728.2 51 1.9e-07 24.4 0.1 1 1 2.7e-09 3e-07 23.7 0.1 9 51 15 59 7 59 0.83 # 32330 # 32551 # 1 # ID=1_39;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.500 1_55 - 498 Zn-ribbon_8 PF09723.5 42 0.041 7.0 9.5 1 2 0.00051 0.056 6.5 5.2 7 35 75 101 75 105 0.89 # 42955 # 44448 # 1 # ID=1_55;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.608 1_55 - 498 Zn-ribbon_8 PF09723.5 42 0.041 7.0 9.5 2 2 0.016 1.8 1.7 0.1 25 37 439 450 430 459 0.71 # 42955 # 44448 # 1 # ID=1_55;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.608 1_109 - 214 TIGR00922 TIGR00922 172 0.00023 13.7 0.0 1 1 2.6e-06 0.00028 13.5 0.0 54 104 105 155 56 176 0.87 # 97659 # 98300 # -1 # ID=1_109;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.542 1_71 - 529 HTH_11 PF08279.7 55 0.00052 12.7 1.8 1 3 0.05 5.5 -0.2 0.1 14 39 30 55 18 59 0.82 # 56288 # 57874 # -1 # ID=1_71;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.395 1_71 - 529 HTH_11 PF08279.7 55 0.00052 12.7 1.8 2 3 9.1e-05 0.0099 8.6 0.0 2 33 153 185 152 186 0.78 # 56288 # 57874 # -1 # ID=1_71;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.395 1_71 - 529 HTH_11 PF08279.7 55 0.00052 12.7 1.8 3 3 0.084 9.1 -0.9 0.0 12 25 232 245 227 246 0.80 # 56288 # 57874 # -1 # ID=1_71;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.395 1_52 - 111 MarR_2 PF12802.2 62 3.2e-06 19.8 0.0 1 1 4.9e-08 5.3e-06 19.1 0.0 10 55 21 66 11 69 0.83 # 41306 # 41638 # -1 # ID=1_52;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.622 1_52 - 111 HTH_5 PF01022.15 47 2e-08 26.8 0.1 1 1 3.2e-10 3.4e-08 26.1 0.0 2 47 16 64 15 64 0.94 # 41306 # 41638 # -1 # ID=1_52;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.622 1_52 - 111 TrmB PF01978.14 68 3.3e-07 23.0 0.0 1 1 4e-09 4.4e-07 22.6 0.0 13 64 21 75 15 77 0.83 # 41306 # 41638 # -1 # ID=1_52;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.622 1_56 - 101 TIGR01455 TIGR01455 442 2.7e-33 108.0 0.5 1 1 2.9e-35 3.2e-33 107.7 0.5 1 77 6 81 6 83 0.96 # 44624 # 44926 # -1 # ID=1_56;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.578 1_77 - 1015 AAA_10 PF12846.2 304 2e-31 102.5 0.0 1 1 2.6e-32 5.6e-31 101.0 0.0 8 303 502 898 498 899 0.92 # 63466 # 66510 # -1 # ID=1_77;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.580 1_59 - 768 AAA_10 PF12846.2 304 9.6e-07 21.5 0.2 1 1 8.8e-08 1.9e-06 20.5 0.2 2 292 137 506 136 516 0.68 # 46692 # 48995 # -1 # ID=1_59;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.542 1_89 - 383 AAA_10 PF12846.2 304 2.2e-05 17.0 0.2 1 2 1.7e-05 0.00038 12.9 0.1 3 22 159 178 157 187 0.85 # 77339 # 78487 # -1 # ID=1_89;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.560 1_89 - 383 AAA_10 PF12846.2 304 2.2e-05 17.0 0.2 2 2 0.017 0.38 3.1 0.0 178 247 256 347 173 352 0.54 # 77339 # 78487 # -1 # ID=1_89;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.560 1_9 - 209 AAA_10 PF12846.2 304 0.00017 14.1 0.0 1 1 1.3e-05 0.00027 13.4 0.0 11 39 11 39 3 66 0.90 # 6842 # 7468 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.429 1_99 - 503 AAA_10 PF12846.2 304 0.00061 12.3 0.0 1 1 4.2e-05 0.00091 11.7 0.0 4 28 232 256 229 362 0.77 # 86709 # 88217 # -1 # ID=1_99;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.558 1_52 - 111 HTH_20 PF12840.2 61 5.9e-16 51.1 0.2 1 1 7.1e-18 7.8e-16 50.8 0.2 3 61 9 69 7 69 0.97 # 41306 # 41638 # -1 # ID=1_52;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.622 1_9 - 209 ArsA_ATPase PF02374.10 305 4.7e-08 25.4 0.9 1 3 1.2e-09 1.3e-07 24.0 0.1 3 48 3 48 1 69 0.85 # 6842 # 7468 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.429 1_9 - 209 ArsA_ATPase PF02374.10 305 4.7e-08 25.4 0.9 2 3 0.053 5.8 -1.2 0.0 121 135 69 85 47 86 0.75 # 6842 # 7468 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.429 1_9 - 209 ArsA_ATPase PF02374.10 305 4.7e-08 25.4 0.9 3 3 0.075 8.2 -1.7 0.0 205 234 132 161 118 202 0.65 # 6842 # 7468 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.429 1_9 - 209 AAA_31 PF13614.1 157 4.7e-06 19.6 0.0 1 2 2.5e-07 2.7e-05 17.1 0.0 2 42 2 42 1 55 0.88 # 6842 # 7468 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.429 1_9 - 209 AAA_31 PF13614.1 157 4.7e-06 19.6 0.0 2 2 0.055 6 -0.2 0.0 109 127 68 86 62 113 0.68 # 6842 # 7468 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.429 1_71 - 529 TIGR02393 TIGR02393 238 5.1e-08 25.5 0.0 1 1 1.1e-09 1.2e-07 24.3 0.0 165 229 136 200 64 204 0.81 # 56288 # 57874 # -1 # ID=1_71;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.395 1_71 - 529 TIGR02392 TIGR02392 270 1.1e-09 31.0 0.1 1 1 2.4e-11 2.6e-09 29.8 0.1 209 262 138 193 98 199 0.82 # 56288 # 57874 # -1 # ID=1_71;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.395 1_57 - 272 Pterin_bind PF00809.17 210 3.1e-60 196.1 0.0 1 1 3.4e-62 3.7e-60 195.9 0.0 1 209 10 216 10 217 0.98 # 45013 # 45828 # -1 # ID=1_57;partial=00;start_type=ATG;rbs_motif=AGxAG;rbs_spacer=5-10bp;gc_cont=0.609 1_31 - 61 Yae1_N PF09811.4 39 6.3e-05 15.5 0.4 1 1 8.5e-07 9.2e-05 15.0 0.4 15 26 9 20 8 26 0.92 # 24335 # 24517 # 1 # ID=1_31;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.514 1_99 - 503 AAA_11 PF13086.1 236 0.00056 12.5 0.0 1 1 6.7e-06 0.00073 12.1 0.0 2 41 213 253 212 353 0.86 # 86709 # 88217 # -1 # ID=1_99;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.558 1_39 - 74 Phage_AlpA PF05930.7 51 7.5e-21 66.7 0.1 1 1 8e-23 8.7e-21 66.5 0.1 3 51 7 55 5 55 0.97 # 32330 # 32551 # 1 # ID=1_39;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.500 # # Program: hmmsearch # Version: 3.1b1 (May 2013) # Pipeline mode: SEARCH # Query file: /tmp/621502da-c9a1-4827-a193-e87aa429e286 # Target file: checkm_output/bins/pm34/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm34/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/621502da-c9a1-4827-a193-e87aa429e286 checkm_output/bins/pm34/genes.faa # Current dir: /mnt/data/azomer/reads-for-assembly/files/output/allcontigs/output_1512029421078392887 # Date: Thu Nov 30 10:03:20 2017 # [ok]