# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_34 - 228 Cons_hypoth95 PF03602.10 183 2.3e-05 16.9 0.0 1 2 0.00065 0.069 5.5 0.0 114 146 20 54 10 82 0.65 # 26929 # 27612 # 1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.554 1_34 - 228 Cons_hypoth95 PF03602.10 183 2.3e-05 16.9 0.0 2 2 4e-05 0.0043 9.4 0.0 41 62 162 183 145 218 0.78 # 26929 # 27612 # 1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.554 1_94 - 518 ABC_tran PF00005.22 137 7.9e-05 16.0 0.0 1 1 5.3e-06 0.00028 14.2 0.0 12 37 226 251 217 288 0.81 # 84353 # 85906 # -1 # ID=1_94;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.469 1_82 - 383 ABC_tran PF00005.22 137 0.00012 15.4 0.0 1 1 4.3e-06 0.00023 14.5 0.0 16 35 162 181 152 211 0.87 # 72298 # 73446 # -1 # ID=1_82;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.516 1_34 - 228 TIGR00095 TIGR00095 194 0.00032 13.1 0.0 1 2 0.0015 0.15 4.3 0.0 124 138 20 34 7 79 0.74 # 26929 # 27612 # 1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.554 1_34 - 228 TIGR00095 TIGR00095 194 0.00032 13.1 0.0 2 2 0.00024 0.026 6.8 0.0 53 86 164 199 155 218 0.77 # 26929 # 27612 # 1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.554 1_82 - 383 MobB PF03205.9 140 2e-05 17.3 0.0 1 2 0.017 1.8 1.3 0.0 14 60 61 108 61 127 0.88 # 72298 # 73446 # -1 # ID=1_82;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.516 1_82 - 383 MobB PF03205.9 140 2e-05 17.3 0.0 2 2 3.1e-06 0.00033 13.4 0.0 5 26 162 183 160 193 0.90 # 72298 # 73446 # -1 # ID=1_82;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.516 1_94 - 518 AAA_19 PF13245.1 76 0.0001 15.1 0.0 1 1 2.6e-06 0.00028 13.7 0.0 10 46 226 259 218 268 0.79 # 84353 # 85906 # -1 # ID=1_94;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.469 1_26 - 215 CbiA PF01656.18 195 1.3e-09 30.7 0.1 1 1 1.8e-11 1.9e-09 30.2 0.1 1 145 4 124 4 173 0.79 # 20424 # 21068 # 1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.426 1_34 - 228 MethyltransfD12 PF02086.10 260 0.00033 13.1 0.0 1 2 0.011 1.1 1.5 0.0 174 188 17 31 8 90 0.84 # 26929 # 27612 # 1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.554 1_34 - 228 MethyltransfD12 PF02086.10 260 0.00033 13.1 0.0 2 2 4e-05 0.0042 9.5 0.0 20 46 163 189 148 197 0.78 # 26929 # 27612 # 1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.554 1_106 - 96 Sigma70_r4_2 PF08281.7 54 5.2e-08 25.3 0.1 1 1 1.4e-09 1.5e-07 23.8 0.0 10 54 21 64 12 64 0.83 # 95027 # 95314 # -1 # ID=1_106;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.448 1_46 - 392 zf-ribbon_3 PF13248.1 26 0.00076 11.7 3.8 1 2 0.0043 0.45 2.9 1.5 16 25 321 330 319 332 0.72 # 35541 # 36716 # 1 # ID=1_46;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.486 1_46 - 392 zf-ribbon_3 PF13248.1 26 0.00076 11.7 3.8 2 2 7.1e-05 0.0075 8.6 0.0 4 13 342 351 340 357 0.80 # 35541 # 36716 # 1 # ID=1_46;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.486 1_94 - 518 AAA_23 PF13476.1 202 0.00014 15.3 0.2 1 1 9.7e-06 0.00051 13.4 0.0 20 38 226 244 208 249 0.84 # 84353 # 85906 # -1 # ID=1_94;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.469 1_82 - 383 AAA_23 PF13476.1 202 0.00023 14.5 0.0 1 1 7.3e-06 0.00039 13.8 0.0 19 40 157 178 142 209 0.83 # 72298 # 73446 # -1 # ID=1_82;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.516 1_4 - 283 TIGR00573 TIGR00573 217 1.7e-15 49.8 0.0 1 1 2.7e-17 2.9e-15 49.0 0.0 12 181 107 274 103 281 0.80 # 2953 # 3801 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.562 1_34 - 228 Methyltransf_26 PF13659.1 117 1.9e-11 37.1 0.0 1 2 4.2e-07 4.5e-05 16.5 0.0 57 114 7 71 2 74 0.72 # 26929 # 27612 # 1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.554 1_34 - 228 Methyltransf_26 PF13659.1 117 1.9e-11 37.1 0.0 2 2 9.7e-08 1e-05 18.6 0.0 4 45 167 207 164 223 0.82 # 26929 # 27612 # 1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.554 1_94 - 518 AAA_30 PF13604.1 196 0.00034 13.2 0.0 1 1 5.8e-06 0.00061 12.4 0.0 4 44 211 251 209 276 0.84 # 84353 # 85906 # -1 # ID=1_94;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.469 1_106 - 96 GerE PF00196.14 58 1.5e-06 20.5 0.0 1 1 1.9e-08 2e-06 20.1 0.0 3 49 21 67 19 72 0.89 # 95027 # 95314 # -1 # ID=1_106;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.448 1_57 - 764 TraG-D_C PF12696.2 128 5.8e-07 22.4 0.1 1 1 1.2e-08 1.3e-06 21.3 0.1 1 88 437 524 437 553 0.83 # 45877 # 48168 # -1 # ID=1_57;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.500 1_26 - 215 MipZ PF09140.6 261 2.5e-08 26.2 2.3 1 2 0.0008 0.085 4.8 0.5 7 25 8 26 2 38 0.71 # 20424 # 21068 # 1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.426 1_26 - 215 MipZ PF09140.6 261 2.5e-08 26.2 2.3 2 2 9e-09 9.6e-07 21.1 0.1 70 133 45 108 25 125 0.84 # 20424 # 21068 # 1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.426 1_34 - 228 UPF0020 PF01170.13 180 1.8e-05 17.3 0.0 1 2 0.00039 0.042 6.4 0.0 104 123 18 37 5 89 0.71 # 26929 # 27612 # 1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.554 1_34 - 228 UPF0020 PF01170.13 180 1.8e-05 17.3 0.0 2 2 6.2e-05 0.0065 9.0 0.0 28 54 163 189 158 221 0.67 # 26929 # 27612 # 1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.554 1_14 - 421 DDE_Tnp_1 PF01609.16 213 8.4e-35 113.2 0.2 1 1 1.7e-36 1.8e-34 112.1 0.0 6 213 128 362 123 362 0.96 # 11018 # 12280 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.340 1_100 - 197 Trp_repressor PF01371.14 88 0.00042 13.2 0.0 1 1 6.1e-06 0.00065 12.6 0.0 1 40 102 141 102 145 0.95 # 90878 # 91468 # -1 # ID=1_100;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.372 1_94 - 518 AAA PF00004.24 132 0.00027 14.2 0.1 1 3 0.064 6.8 -0.1 0.0 38 57 81 100 52 110 0.81 # 84353 # 85906 # -1 # ID=1_94;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.469 1_94 - 518 AAA PF00004.24 132 0.00027 14.2 0.1 2 3 0.00033 0.035 7.3 0.0 1 21 228 248 228 278 0.83 # 84353 # 85906 # -1 # ID=1_94;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.469 1_94 - 518 AAA PF00004.24 132 0.00027 14.2 0.1 3 3 0.017 1.8 1.8 0.0 9 66 442 508 436 515 0.64 # 84353 # 85906 # -1 # ID=1_94;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.469 1_39 - 141 Rrf2 PF02082.15 83 0.00056 13.0 0.0 1 2 0.0023 0.24 4.6 0.0 28 51 33 56 28 57 0.90 # 29991 # 30413 # 1 # ID=1_39;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.565 1_39 - 141 Rrf2 PF02082.15 83 0.00056 13.0 0.0 2 2 0.00072 0.076 6.2 0.0 26 65 75 118 65 131 0.76 # 29991 # 30413 # 1 # ID=1_39;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.565 1_34 - 228 N6_N4_Mtase PF01555.13 231 8.1e-37 119.9 0.0 1 1 3.4e-36 3.6e-34 111.2 0.0 1 228 21 200 21 203 0.89 # 26929 # 27612 # 1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.554 1_28 - 327 Hydantoinase_A PF01968.13 290 7.5e-09 28.0 0.2 1 2 1.7e-06 0.00018 13.6 0.1 66 98 154 185 141 192 0.79 # 21877 # 22857 # 1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.440 1_28 - 327 Hydantoinase_A PF01968.13 290 7.5e-09 28.0 0.2 2 2 5.5e-06 0.00058 11.9 0.0 211 263 244 296 201 301 0.86 # 21877 # 22857 # 1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.440 1_94 - 518 AAA_16 PF13191.1 185 9.9e-05 15.4 0.0 1 1 6.4e-06 0.00034 13.6 0.0 8 51 213 252 212 301 0.78 # 84353 # 85906 # -1 # ID=1_94;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.469 1_82 - 383 AAA_16 PF13191.1 185 0.00031 13.7 0.0 1 1 1.2e-05 0.00065 12.7 0.0 27 52 160 188 148 282 0.82 # 72298 # 73446 # -1 # ID=1_82;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.516 1_82 - 383 AAA_22 PF13401.1 131 1.1e-05 18.6 0.0 1 1 4.9e-07 2.6e-05 17.4 0.0 4 46 157 196 152 233 0.76 # 72298 # 73446 # -1 # ID=1_82;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.516 1_94 - 518 AAA_22 PF13401.1 131 0.00028 14.0 0.0 1 1 1.3e-05 0.00067 12.8 0.0 6 28 227 249 222 330 0.77 # 84353 # 85906 # -1 # ID=1_94;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.469 1_53 - 283 Methyltransf_27 PF13708.1 194 2.4e-66 215.9 0.0 1 1 3.1e-68 3.2e-66 215.5 0.0 2 194 85 278 84 278 0.96 # 41295 # 42143 # 1 # ID=1_53;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.504 1_94 - 518 AAA_29 PF13555.1 62 3e-05 16.5 0.0 1 1 1.1e-06 6.1e-05 15.6 0.0 21 40 224 242 217 254 0.83 # 84353 # 85906 # -1 # ID=1_94;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.469 1_82 - 383 AAA_29 PF13555.1 62 4.1e-05 16.1 0.0 1 1 2.3e-06 0.00012 14.6 0.0 26 44 160 178 151 186 0.83 # 72298 # 73446 # -1 # ID=1_82;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.516 1_28 - 327 TIGR02350 TIGR02350 596 9.7e-05 13.5 0.6 1 3 0.083 8.8 -2.9 0.0 362 381 80 99 67 130 0.59 # 21877 # 22857 # 1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.440 1_28 - 327 TIGR02350 TIGR02350 596 9.7e-05 13.5 0.6 2 3 0.00011 0.011 6.7 0.0 175 200 159 181 142 198 0.82 # 21877 # 22857 # 1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.440 1_28 - 327 TIGR02350 TIGR02350 596 9.7e-05 13.5 0.6 3 3 0.00048 0.051 4.5 0.0 271 348 220 295 205 308 0.85 # 21877 # 22857 # 1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.440 1_4 - 283 RNase_H_2 PF13482.1 164 0.00012 14.9 0.0 1 1 7.8e-06 0.00083 12.2 0.0 1 79 105 199 105 255 0.57 # 2953 # 3801 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.562 1_52 - 84 HTH_3 PF01381.17 55 4.2e-05 16.4 0.0 1 1 1e-06 0.00011 15.1 0.0 1 34 6 39 6 45 0.90 # 40463 # 40714 # -1 # ID=1_52;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.556 1_14 - 421 DDE_Tnp_1_4 PF13701.1 449 3.4e-27 87.6 3.5 1 2 0.0052 0.55 1.2 0.0 11 42 5 36 3 62 0.72 # 11018 # 12280 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.340 1_14 - 421 DDE_Tnp_1_4 PF13701.1 449 3.4e-27 87.6 3.5 2 2 1.5e-28 1.5e-26 85.4 2.2 137 438 122 418 41 420 0.82 # 11018 # 12280 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.340 1_43 - 653 HTH_23 PF13384.1 50 4.7e-06 19.2 0.0 1 1 2.2e-06 7.8e-05 15.3 0.0 13 40 149 176 143 180 0.91 # 32248 # 34206 # 1 # ID=1_43;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.594 1_106 - 96 HTH_23 PF13384.1 50 3.9e-05 16.3 0.0 1 1 1.5e-06 5.3e-05 15.9 0.0 12 41 31 60 24 73 0.76 # 95027 # 95314 # -1 # ID=1_106;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.448 1_52 - 84 HTH_23 PF13384.1 50 6.8e-05 15.5 0.2 1 1 1.1e-05 0.00037 13.2 0.1 17 33 14 30 6 38 0.86 # 40463 # 40714 # -1 # ID=1_52;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.556 1_12 - 116 zf-DHHC PF01529.15 174 0.0018 10.7 4.5 1 1 1.2e-05 0.0012 11.2 3.1 88 151 32 108 30 113 0.77 # 10163 # 10510 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.339 1_52 - 84 HTH_19 PF12844.2 64 9.1e-05 15.5 0.0 1 1 1.2e-06 0.00012 15.1 0.0 7 53 9 56 5 67 0.87 # 40463 # 40714 # -1 # ID=1_52;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.556 1_52 - 84 DUF1870 PF08965.5 118 0.00026 13.6 1.0 1 1 3e-06 0.00032 13.4 1.0 1 75 1 78 1 82 0.69 # 40463 # 40714 # -1 # ID=1_52;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.556 1_106 - 96 HTH_29 PF13551.1 112 0.00016 14.9 0.0 1 1 2.1e-06 0.00023 14.3 0.0 8 36 33 60 27 76 0.79 # 95027 # 95314 # -1 # ID=1_106;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.448 1_46 - 392 OrfB_Zn_ribbon PF07282.6 69 8.1e-29 92.2 0.3 1 1 1.8e-30 1.9e-28 91.0 0.3 1 69 293 363 293 363 0.98 # 35541 # 36716 # 1 # ID=1_46;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.486 1_4 - 283 DNA_pol_A_exo1 PF01612.15 176 1.3e-05 17.7 0.0 1 1 2.7e-07 2.9e-05 16.6 0.0 20 95 102 196 87 266 0.84 # 2953 # 3801 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.562 1_94 - 518 G-alpha PF00503.15 389 0.00067 11.3 0.0 1 2 0.054 5.7 -1.6 0.0 234 272 70 113 29 117 0.79 # 84353 # 85906 # -1 # ID=1_94;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.469 1_94 - 518 G-alpha PF00503.15 389 0.00067 11.3 0.0 2 2 1.9e-05 0.002 9.8 0.0 58 87 225 254 214 325 0.84 # 84353 # 85906 # -1 # ID=1_94;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.469 1_51 - 94 UBA PF00627.26 37 0.00026 13.8 0.1 1 2 0.022 2.4 1.3 0.0 4 16 23 35 20 36 0.81 # 40151 # 40432 # 1 # ID=1_51;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.500 1_51 - 94 UBA PF00627.26 37 0.00026 13.8 0.1 2 2 2.9e-05 0.0031 10.4 0.0 5 22 60 77 58 77 0.86 # 40151 # 40432 # 1 # ID=1_51;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.500 1_77 - 231 OB_NTP_bind PF07717.11 114 0.00058 12.7 0.0 1 1 7.8e-06 0.00083 12.2 0.0 24 83 28 97 16 158 0.79 # 66534 # 67226 # -1 # ID=1_77;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.508 1_85 - 195 DNA_pol3_delta PF06144.8 172 2.1e-06 20.3 0.0 1 1 3e-08 3.2e-06 19.7 0.0 35 99 92 152 74 179 0.80 # 75111 # 75695 # -1 # ID=1_85;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.400 1_57 - 764 TrwB_AAD_bind PF10412.4 386 2.4e-06 19.3 0.2 1 2 9.3e-05 0.0099 7.4 0.0 11 32 132 153 126 157 0.84 # 45877 # 48168 # -1 # ID=1_57;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.500 1_57 - 764 TrwB_AAD_bind PF10412.4 386 2.4e-06 19.3 0.2 2 2 3.1e-05 0.0033 9.0 0.1 247 332 440 525 427 542 0.88 # 45877 # 48168 # -1 # ID=1_57;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.500 1_26 - 215 TIGR01968 TIGR01968 261 8.2e-05 14.7 2.1 1 2 8.1e-06 0.00043 12.3 0.8 3 50 3 44 1 49 0.80 # 20424 # 21068 # 1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.426 1_26 - 215 TIGR01968 TIGR01968 261 8.2e-05 14.7 2.1 2 2 0.017 0.89 1.5 0.0 101 140 63 102 49 123 0.75 # 20424 # 21068 # 1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.426 1_28 - 327 TIGR01968 TIGR01968 261 0.00046 12.2 1.5 1 1 3.5e-05 0.0019 10.2 1.4 46 128 63 155 60 215 0.74 # 21877 # 22857 # 1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.440 1_82 - 383 AAA_18 PF13238.1 129 1.6e-05 18.2 0.0 1 1 6e-07 3.2e-05 17.3 0.0 2 42 161 197 161 230 0.83 # 72298 # 73446 # -1 # ID=1_82;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.516 1_94 - 518 AAA_18 PF13238.1 129 0.00034 13.9 0.0 1 1 2.1e-05 0.0011 12.2 0.0 1 18 228 245 228 316 0.86 # 84353 # 85906 # -1 # ID=1_94;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.469 1_30 - 425 IMS_HHH PF11798.3 32 3.3e-08 26.3 0.2 1 1 9.1e-10 9.6e-08 24.9 0.2 3 32 172 201 170 201 0.93 # 23268 # 24542 # -1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.515 1_4 - 283 TIGR01406 TIGR01406 231 3.2e-17 55.5 0.0 1 1 5.2e-19 5.5e-17 54.8 0.0 4 170 106 268 104 280 0.78 # 2953 # 3801 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.562 1_74 - 235 DUF3810 PF12725.2 318 0.00092 11.1 0.8 1 1 1.4e-05 0.0015 10.4 0.8 90 174 106 189 95 194 0.86 # 63544 # 64248 # -1 # ID=1_74;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.504 1_82 - 383 DUF87 PF01935.12 229 0.00065 12.5 0.0 1 1 1.1e-05 0.0012 11.7 0.0 28 56 162 191 161 192 0.88 # 72298 # 73446 # -1 # ID=1_82;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.516 1_106 - 96 HTH_28 PF13518.1 52 0.00016 14.7 0.0 1 1 4.3e-06 0.00046 13.2 0.0 9 38 33 62 26 75 0.86 # 95027 # 95314 # -1 # ID=1_106;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.448 1_4 - 283 TIGR01298 TIGR01298 200 6.3e-07 22.0 1.0 1 1 5.7e-08 6e-06 18.8 1.0 93 189 167 267 97 275 0.80 # 2953 # 3801 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.562 1_52 - 84 HTH_31 PF13560.1 64 6.2e-07 22.6 1.7 1 1 9.5e-09 1e-06 21.9 1.1 3 43 3 43 2 58 0.86 # 40463 # 40714 # -1 # ID=1_52;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.556 1_46 - 392 HTH_OrfB_IS605 PF12323.3 46 4.4e-21 67.0 0.2 1 1 1e-22 1.1e-20 65.8 0.2 1 45 1 45 1 46 0.98 # 35541 # 36716 # 1 # ID=1_46;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.486 1_94 - 518 T2SE PF00437.15 272 2.5e-41 134.3 0.1 1 1 9.6e-43 5.1e-41 133.3 0.0 10 271 97 373 90 374 0.85 # 84353 # 85906 # -1 # ID=1_94;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.469 1_82 - 383 T2SE PF00437.15 272 8.5e-36 116.2 0.0 1 1 2.4e-37 1.3e-35 115.6 0.0 120 269 149 306 127 309 0.88 # 72298 # 73446 # -1 # ID=1_82;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.516 1_28 - 327 StbA PF06406.6 318 1.3e-156 513.3 1.2 1 1 1.4e-158 1.5e-156 513.2 1.2 1 318 1 319 1 319 1.00 # 21877 # 22857 # 1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.440 1_82 - 383 AAA_17 PF13207.1 121 2e-05 18.4 0.1 1 2 4.7e-06 0.00025 14.9 0.0 3 47 161 208 161 251 0.76 # 72298 # 73446 # -1 # ID=1_82;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.516 1_82 - 383 AAA_17 PF13207.1 121 2e-05 18.4 0.1 2 2 0.086 4.5 1.1 0.1 24 113 332 363 274 374 0.60 # 72298 # 73446 # -1 # ID=1_82;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.516 1_94 - 518 AAA_17 PF13207.1 121 2.3e-05 18.2 0.2 1 1 2.1e-06 0.00011 16.0 0.0 1 24 227 255 227 345 0.72 # 84353 # 85906 # -1 # ID=1_94;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.469 1_3 - 94 TIGR02211 TIGR02211 221 0.00012 14.3 0.0 1 1 1.2e-06 0.00013 14.2 0.0 109 167 9 72 2 87 0.80 # 2632 # 2913 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.539 1_82 - 383 AAA_25 PF13481.1 194 0.00021 13.7 0.0 1 1 7e-06 0.00037 12.9 0.0 24 58 148 182 124 207 0.78 # 72298 # 73446 # -1 # ID=1_82;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.516 1_94 - 518 AAA_25 PF13481.1 194 0.00029 13.2 0.1 1 2 8.7e-05 0.0046 9.3 0.0 25 65 217 260 200 270 0.72 # 84353 # 85906 # -1 # ID=1_94;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.469 1_94 - 518 AAA_25 PF13481.1 194 0.00029 13.2 0.1 2 2 0.039 2 0.7 0.0 153 190 297 337 292 340 0.74 # 84353 # 85906 # -1 # ID=1_94;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.469 1_94 - 518 AAA_14 PF13173.1 128 0.00083 12.3 0.0 1 1 3.7e-05 0.0039 10.1 0.0 5 30 228 254 225 286 0.80 # 84353 # 85906 # -1 # ID=1_94;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.469 1_26 - 215 VirC1 PF07015.6 231 0.00043 12.4 0.0 1 2 0.00073 0.077 5.0 0.0 3 29 3 29 1 36 0.81 # 20424 # 21068 # 1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.426 1_26 - 215 VirC1 PF07015.6 231 0.00043 12.4 0.0 2 2 0.00052 0.055 5.5 0.0 87 190 77 181 59 194 0.70 # 20424 # 21068 # 1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.426 1_106 - 96 HTH_Tnp_ISL3 PF13542.1 52 6.4e-05 15.1 0.0 1 1 9.7e-07 0.0001 14.5 0.0 29 50 38 59 34 60 0.89 # 95027 # 95314 # -1 # ID=1_106;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.448 1_82 - 383 RNA_helicase PF00910.17 107 0.0001 15.5 0.0 1 1 1.9e-06 0.0002 14.5 0.0 2 28 161 187 160 205 0.83 # 72298 # 73446 # -1 # ID=1_82;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.516 1_82 - 383 ATP_bind_1 PF03029.12 238 4.9e-05 15.9 0.0 1 1 7.2e-07 7.6e-05 15.3 0.0 1 23 162 184 162 197 0.86 # 72298 # 73446 # -1 # ID=1_82;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.516 1_94 - 518 DAP3 PF10236.4 309 0.00066 11.6 0.0 1 1 1.2e-05 0.0013 10.7 0.0 21 42 223 244 215 253 0.86 # 84353 # 85906 # -1 # ID=1_94;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.469 1_18 - 197 MarR_2 PF12802.2 62 0.00038 13.1 0.5 1 2 0.001 0.11 5.3 0.1 4 33 8 40 7 44 0.81 # 14077 # 14667 # -1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.633 1_18 - 197 MarR_2 PF12802.2 62 0.00038 13.1 0.5 2 2 0.0012 0.13 5.0 0.0 41 57 54 70 48 73 0.84 # 14077 # 14667 # -1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.633 1_4 - 283 RNase_T PF00929.19 164 3.5e-26 85.4 0.0 1 1 4.3e-28 4.6e-26 85.0 0.0 1 163 105 262 105 263 0.95 # 2953 # 3801 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.562 1_69 - 1015 AAA_10 PF12846.2 304 7.8e-30 97.3 0.0 1 1 6.9e-31 1.8e-29 96.0 0.0 8 302 502 897 498 898 0.89 # 58392 # 61436 # -1 # ID=1_69;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.510 1_57 - 764 AAA_10 PF12846.2 304 2.7e-05 16.7 1.0 1 1 3.1e-06 8.3e-05 15.1 1.0 2 287 137 501 136 514 0.62 # 45877 # 48168 # -1 # ID=1_57;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.500 1_94 - 518 AAA_10 PF12846.2 304 0.00024 13.6 0.0 1 1 1.7e-05 0.00044 12.7 0.0 4 30 228 256 226 320 0.81 # 84353 # 85906 # -1 # ID=1_94;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.469 1_82 - 383 AAA_10 PF12846.2 304 0.00054 12.4 0.0 1 1 4e-05 0.0011 11.4 0.0 2 21 158 177 157 196 0.83 # 72298 # 73446 # -1 # ID=1_82;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.516 1_51 - 94 Yae1_N PF09811.4 39 8.9e-08 24.6 6.2 1 1 1.6e-09 1.7e-07 23.7 6.2 15 38 30 53 29 55 0.48 # 40151 # 40432 # 1 # ID=1_51;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.500 1_41 - 176 SSB PF00436.20 104 6.4e-41 131.5 0.3 1 1 7.9e-43 8.4e-41 131.1 0.3 1 101 6 109 6 112 0.96 # 31371 # 31898 # 1 # ID=1_41;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.597 # # Program: hmmsearch # Version: 3.1b1 (May 2013) # Pipeline mode: SEARCH # Query file: /tmp/e2c4380f-196b-4598-8173-636ea72561fd # Target file: checkm_output/bins/pm337/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm337/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/e2c4380f-196b-4598-8173-636ea72561fd checkm_output/bins/pm337/genes.faa # Current dir: /mnt/data/azomer/reads-for-assembly/files/output/allcontigs/output_1512029421078392887 # Date: Thu Nov 30 10:03:14 2017 # [ok]