# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_3 - 339 HTH_DeoR PF08220.7 57 1.3e-05 12.7 0.0 1 2 0.014 0.041 1.5 0.0 11 37 143 168 140 173 0.77 # 2876 # 3892 # -1 # ID=1_3;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.534 1_3 - 339 HTH_DeoR PF08220.7 57 1.3e-05 12.7 0.0 2 2 0.0001 0.00031 8.3 0.0 16 33 304 321 302 326 0.92 # 2876 # 3892 # -1 # ID=1_3;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.534 1_3 - 339 HTH_38 PF13936.1 44 3.9e-06 14.4 0.0 1 2 0.02 0.059 1.1 0.0 14 35 140 161 137 162 0.88 # 2876 # 3892 # -1 # ID=1_3;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.534 1_3 - 339 HTH_38 PF13936.1 44 3.9e-06 14.4 0.0 2 2 2.4e-05 7.2e-05 10.4 0.0 9 40 291 322 288 324 0.90 # 2876 # 3892 # -1 # ID=1_3;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.534 1_3 - 339 Sigma70_r4_2 PF08281.7 54 4.3e-09 23.8 0.1 1 2 0.0046 0.014 3.0 0.0 23 42 143 162 138 165 0.84 # 2876 # 3892 # -1 # ID=1_3;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.534 1_3 - 339 Sigma70_r4_2 PF08281.7 54 4.3e-09 23.8 0.1 2 2 8.6e-08 2.6e-07 18.1 0.0 14 47 291 323 289 324 0.94 # 2876 # 3892 # -1 # ID=1_3;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.534 1_3 - 339 Terminase_5 PF06056.7 58 8.8e-07 16.5 0.0 1 1 9.2e-07 2.7e-06 14.9 0.0 1 36 290 325 290 330 0.92 # 2876 # 3892 # -1 # ID=1_3;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.534 1_3 - 339 HTH_Tnp_1 PF01527.15 76 1e-05 13.5 0.1 1 1 1.1e-05 3.3e-05 11.9 0.1 9 45 289 324 282 333 0.87 # 2876 # 3892 # -1 # ID=1_3;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.534 1_3 - 339 GerE PF00196.14 58 2.6e-07 18.0 0.0 1 2 0.00073 0.0022 5.4 0.0 8 32 136 160 135 162 0.95 # 2876 # 3892 # -1 # ID=1_3;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.534 1_3 - 339 GerE PF00196.14 58 2.6e-07 18.0 0.0 2 2 2.6e-05 7.8e-05 10.0 0.0 11 36 295 320 289 325 0.86 # 2876 # 3892 # -1 # ID=1_3;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.534 1_3 - 339 Sigma70_r4 PF04545.11 50 7.7e-07 16.5 0.0 1 2 6e-05 0.00018 8.9 0.0 9 39 136 165 135 169 0.77 # 2876 # 3892 # -1 # ID=1_3;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.534 1_3 - 339 Sigma70_r4 PF04545.11 50 7.7e-07 16.5 0.0 2 2 0.00085 0.0026 5.2 0.0 10 39 293 321 289 325 0.79 # 2876 # 3892 # -1 # ID=1_3;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.534 1_3 - 339 HTH_23 PF13384.1 50 3e-11 30.8 0.3 1 1 5.8e-11 1.7e-10 28.4 0.0 4 38 289 323 286 327 0.93 # 2876 # 3892 # -1 # ID=1_3;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.534 1_3 - 339 HTH_29 PF13551.1 112 1.7e-05 13.0 2.4 1 2 0.054 0.16 0.2 0.1 25 71 240 287 228 299 0.72 # 2876 # 3892 # -1 # ID=1_3;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.534 1_3 - 339 HTH_29 PF13551.1 112 1.7e-05 13.0 2.4 2 2 1.9e-05 5.6e-05 11.3 0.1 1 34 292 324 292 329 0.84 # 2876 # 3892 # -1 # ID=1_3;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.534 1_3 - 339 HTH_28 PF13518.1 52 1.1e-07 19.9 1.0 1 1 7e-08 2.1e-07 19.0 0.1 1 34 291 324 291 329 0.93 # 2876 # 3892 # -1 # ID=1_3;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.534 1_3 - 339 HTH_31 PF13560.1 64 6.7e-05 11.1 1.8 1 2 0.074 0.22 -0.2 0.1 10 29 143 161 138 166 0.65 # 2876 # 3892 # -1 # ID=1_3;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.534 1_3 - 339 HTH_31 PF13560.1 64 6.7e-05 11.1 1.8 2 2 6.6e-05 0.0002 9.6 0.2 10 35 292 323 256 329 0.90 # 2876 # 3892 # -1 # ID=1_3;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.534 1_3 - 339 HTH_Tnp_ISL3 PF13542.1 52 1.3e-05 12.4 0.5 1 1 1.5e-05 4.5e-05 10.7 0.3 28 49 303 324 292 326 0.84 # 2876 # 3892 # -1 # ID=1_3;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.534 1_3 - 339 HTH_17 PF12728.2 51 3.4e-08 21.7 0.3 1 3 0.00083 0.0025 6.1 0.0 2 16 147 161 146 166 0.91 # 2876 # 3892 # -1 # ID=1_3;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.534 1_3 - 339 HTH_17 PF12728.2 51 3.4e-08 21.7 0.3 2 3 0.055 0.16 0.3 0.0 13 25 181 193 176 197 0.84 # 2876 # 3892 # -1 # ID=1_3;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.534 1_3 - 339 HTH_17 PF12728.2 51 3.4e-08 21.7 0.3 3 3 3.1e-05 9.3e-05 10.7 0.0 3 24 304 325 303 335 0.90 # 2876 # 3892 # -1 # ID=1_3;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.534 1_3 - 339 HTH_11 PF08279.7 55 3.8e-06 14.6 0.1 1 2 0.0019 0.0056 4.4 0.0 15 30 145 161 137 168 0.80 # 2876 # 3892 # -1 # ID=1_3;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.534 1_3 - 339 HTH_11 PF08279.7 55 3.8e-06 14.6 0.1 2 2 0.00022 0.00066 7.4 0.0 17 34 304 321 301 325 0.89 # 2876 # 3892 # -1 # ID=1_3;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.534 1_3 - 339 Sigma70_ECF PF07638.6 185 1e-05 13.2 0.2 1 2 0.036 0.11 0.1 0.0 151 174 146 172 136 183 0.73 # 2876 # 3892 # -1 # ID=1_3;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.534 1_3 - 339 Sigma70_ECF PF07638.6 185 1e-05 13.2 0.2 2 2 2.1e-05 6.2e-05 10.6 0.1 135 181 287 332 263 335 0.80 # 2876 # 3892 # -1 # ID=1_3;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.534 # # Program: hmmsearch # Version: 3.1b1 (May 2013) # Pipeline mode: SEARCH # Query file: /tmp/cbf0d776-ae46-4b73-9eae-975d1d4cdef5 # Target file: checkm_output/bins/pm331/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm331/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/cbf0d776-ae46-4b73-9eae-975d1d4cdef5 checkm_output/bins/pm331/genes.faa # Current dir: /mnt/data/azomer/reads-for-assembly/files/output/allcontigs/output_1512029421078392887 # Date: Thu Nov 30 10:03:06 2017 # [ok]