# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 3_3 - 323 KaiC PF06745.8 227 0.00024 13.4 0.1 1 1 8.6e-06 0.00054 12.3 0.1 12 43 33 63 27 149 0.80 # 2319 # 3287 # 1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.540 1_20 - 344 KaiC PF06745.8 227 0.0012 11.2 0.1 1 1 3.5e-05 0.0022 10.3 0.1 8 37 152 181 147 187 0.88 # 19221 # 20252 # -1 # ID=1_20;partial=00;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.407 3_1 - 227 HTH_IclR PF09339.5 52 2.4e-05 17.1 0.0 1 1 1.5e-06 6.4e-05 15.8 0.0 18 40 198 220 185 221 0.92 # 1 # 681 # 1 # ID=3_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.554 2_16 - 71 HTH_IclR PF09339.5 52 6.8e-05 15.7 0.0 1 1 1.9e-06 7.9e-05 15.5 0.0 14 50 20 56 9 58 0.90 # 14341 # 14553 # 1 # ID=2_16;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.559 3_4 - 346 HTH_IclR PF09339.5 52 0.00013 14.8 2.7 1 2 0.00036 0.015 8.2 0.0 16 37 38 59 27 68 0.84 # 3476 # 4513 # -1 # ID=3_4;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.518 3_4 - 346 HTH_IclR PF09339.5 52 0.00013 14.8 2.7 2 2 0.0034 0.14 5.1 0.5 30 40 127 137 125 138 0.90 # 3476 # 4513 # -1 # ID=3_4;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.518 2_16 - 71 HrcA_DNA-bdg PF03444.10 79 4.8e-06 19.2 0.0 1 1 4.4e-08 5.5e-06 19.0 0.0 9 61 5 62 1 65 0.78 # 14341 # 14553 # 1 # ID=2_16;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.559 3_3 - 323 ABC_tran PF00005.22 137 8.9e-06 19.3 0.1 1 1 2.7e-07 1.7e-05 18.4 0.1 2 90 31 120 30 159 0.75 # 2319 # 3287 # 1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.540 1_20 - 344 ABC_tran PF00005.22 137 6.7e-05 16.4 0.0 1 1 3e-06 0.00019 15.0 0.0 7 32 159 184 155 227 0.85 # 19221 # 20252 # -1 # ID=1_20;partial=00;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.407 3_1 - 227 HTH_22 PF13309.1 64 3.1e-05 17.0 0.1 1 1 8.8e-06 0.00037 13.5 0.0 45 63 201 219 198 220 0.87 # 1 # 681 # 1 # ID=3_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.554 1_4 - 187 HTH_22 PF13309.1 64 3.5e-05 16.8 0.5 1 1 9e-06 0.00037 13.5 0.0 47 64 166 183 164 183 0.92 # 2520 # 3080 # 1 # ID=1_4;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.656 3_6 - 298 HTH_22 PF13309.1 64 0.00099 12.1 0.2 1 2 0.0067 0.28 4.3 0.0 24 48 6 30 4 33 0.91 # 5121 # 6014 # 1 # ID=3_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.406 3_6 - 298 HTH_22 PF13309.1 64 0.00099 12.1 0.2 2 2 0.0045 0.19 4.8 0.1 1 33 104 136 104 140 0.92 # 5121 # 6014 # 1 # ID=3_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.406 2_39 - 425 Cdd1 PF11731.3 93 0.00041 13.5 0.0 1 1 8.1e-06 0.001 12.3 0.0 10 47 178 215 141 227 0.85 # 29055 # 30329 # 1 # ID=2_39;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.540 3_2 - 555 rve_3 PF13683.1 67 0.00027 13.7 1.3 1 1 7.8e-06 0.00097 11.9 1.3 12 58 282 331 278 339 0.84 # 665 # 2329 # 1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.556 3_4 - 346 HTH_38 PF13936.1 44 5.4e-07 22.4 0.8 1 1 8.6e-08 3.6e-06 19.7 0.0 10 41 30 61 26 62 0.89 # 3476 # 4513 # -1 # ID=3_4;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.518 3_1 - 227 HTH_38 PF13936.1 44 0.00012 14.8 0.3 1 1 1.3e-05 0.00053 12.8 0.0 13 41 190 219 187 221 0.88 # 1 # 681 # 1 # ID=3_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.554 4_3 - 251 HTH_38 PF13936.1 44 0.0054 9.6 5.6 1 1 3.7e-05 0.0016 11.3 0.3 17 43 180 206 170 207 0.79 # 1187 # 1939 # 1 # ID=4_3;partial=01;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.485 4_2 - 207 MobB PF03205.9 140 3.3e-06 20.1 0.4 1 1 4.1e-07 1.7e-05 17.8 0.1 10 104 12 88 2 104 0.68 # 272 # 892 # -1 # ID=4_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.459 1_20 - 344 MobB PF03205.9 140 0.00016 14.6 0.0 1 1 6.4e-06 0.00027 13.9 0.0 2 42 165 204 164 227 0.86 # 19221 # 20252 # -1 # ID=1_20;partial=00;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.407 3_3 - 323 MobB PF03205.9 140 0.0004 13.3 0.1 1 1 3.4e-05 0.0014 11.6 0.0 2 31 42 70 41 86 0.78 # 2319 # 3287 # 1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.540 3_2 - 555 HTH_Tnp_4 PF13613.1 53 0.00041 13.1 0.4 1 1 1.1e-05 0.0014 11.4 0.0 26 44 38 56 35 57 0.90 # 665 # 2329 # 1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.556 2_46 - 372 DUF3584 PF12128.3 1201 0.054 3.9 61.1 1 1 0.0042 0.52 0.6 61.0 261 533 79 352 68 366 0.56 # 35626 # 36741 # -1 # ID=2_46;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.583 3_1 - 227 HTH_8 PF02954.14 42 0.00037 13.3 0.1 1 1 7.6e-06 0.00095 12.0 0.1 24 42 204 222 201 222 0.89 # 1 # 681 # 1 # ID=3_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.554 3_1 - 227 TetR_N PF00440.18 47 0.00079 12.3 0.8 1 2 0.046 5.7 -0.0 0.0 12 21 44 53 41 53 0.84 # 1 # 681 # 1 # ID=3_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.554 3_1 - 227 TetR_N PF00440.18 47 0.00079 12.3 0.8 2 2 5.2e-05 0.0065 9.4 0.2 16 35 198 217 190 218 0.88 # 1 # 681 # 1 # ID=3_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.554 3_3 - 323 AAA_19 PF13245.1 76 8e-05 15.6 0.2 1 1 3.3e-06 0.00041 13.3 0.1 6 37 36 67 32 119 0.75 # 2319 # 3287 # 1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.540 1_48 - 355 CbiA PF01656.18 195 1.8e-30 99.0 0.0 1 1 6.9e-32 2.9e-30 98.3 0.0 1 172 4 249 4 279 0.84 # 40205 # 41269 # -1 # ID=1_48;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.397 4_2 - 207 CbiA PF01656.18 195 1.2e-28 93.1 1.5 1 1 7.2e-30 3e-28 91.8 1.5 1 142 4 123 4 162 0.77 # 272 # 892 # -1 # ID=4_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.459 2_41 - 402 CbiA PF01656.18 195 2.8e-18 59.2 0.0 1 1 1.4e-19 5.8e-18 58.2 0.0 1 141 111 291 111 328 0.75 # 31385 # 32590 # -1 # ID=2_41;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.469 3_3 - 323 PRK PF00485.13 194 0.00042 13.1 0.0 1 1 7e-06 0.00087 12.1 0.0 1 38 42 81 42 132 0.66 # 2319 # 3287 # 1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.540 2_40 - 325 Sigma70_r4_2 PF08281.7 54 0.00065 12.4 0.0 1 1 1.6e-05 0.002 10.8 0.0 24 50 158 184 153 185 0.89 # 30411 # 31385 # -1 # ID=2_40;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.453 2_8 - 330 Rep_3 PF01051.16 222 1e-32 106.7 0.2 1 1 3.7e-34 1.5e-32 106.1 0.2 3 214 14 269 13 275 0.91 # 5425 # 6414 # 1 # ID=2_8;partial=00;start_type=TTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.523 1_44 - 286 Rep_3 PF01051.16 222 1.2e-24 80.3 8.3 1 1 3.9e-26 1.6e-24 79.9 8.3 5 222 10 256 8 256 0.87 # 37014 # 37871 # 1 # ID=1_44;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.322 1_45 - 284 Rep_3 PF01051.16 222 3.1e-19 62.6 5.6 1 1 1e-20 4.3e-19 62.2 5.6 3 222 73 280 71 280 0.88 # 37876 # 38727 # 1 # ID=1_45;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.313 6_1 - 235 rve PF00665.21 120 5.5e-13 42.3 0.1 1 2 0.045 1.9 1.9 0.0 78 102 27 49 6 54 0.84 # 65 # 769 # 1 # ID=6_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.530 6_1 - 235 rve PF00665.21 120 5.5e-13 42.3 0.1 2 2 2.5e-13 1e-11 38.2 0.0 9 119 75 182 70 183 0.89 # 65 # 769 # 1 # ID=6_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.530 3_2 - 555 rve PF00665.21 120 1.7e-12 40.8 0.0 1 1 1.1e-13 4.5e-12 39.4 0.0 2 118 157 298 156 300 0.89 # 665 # 2329 # 1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.556 3_4 - 346 rve PF00665.21 120 3.1e-10 33.4 0.0 1 1 1.9e-11 7.8e-10 32.2 0.0 18 118 206 305 190 307 0.91 # 3476 # 4513 # -1 # ID=3_4;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.518 1_48 - 355 YhjQ PF06564.7 244 3.7e-12 39.3 0.0 1 2 3.3e-09 4.1e-07 22.8 0.0 1 45 1 45 1 52 0.91 # 40205 # 41269 # -1 # ID=1_48;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.397 1_48 - 355 YhjQ PF06564.7 244 3.7e-12 39.3 0.0 2 2 1.2e-06 0.00015 14.4 0.0 103 151 137 184 127 199 0.87 # 40205 # 41269 # -1 # ID=1_48;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.397 3_4 - 346 Terminase_5 PF06056.7 58 0.00019 14.2 0.0 1 1 6.1e-06 0.00076 12.3 0.0 3 35 30 62 28 85 0.86 # 3476 # 4513 # -1 # ID=3_4;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.518 1_20 - 344 AAA_23 PF13476.1 202 0.00049 13.7 0.2 1 1 7.3e-06 0.00091 12.8 0.2 21 38 165 182 155 185 0.88 # 19221 # 20252 # -1 # ID=1_20;partial=00;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.407 4_2 - 207 AAA_24 PF13479.1 213 0.0008 12.2 0.7 1 2 1.7e-05 0.0021 10.9 0.1 12 88 11 95 3 99 0.81 # 272 # 892 # -1 # ID=4_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.459 4_2 - 207 AAA_24 PF13479.1 213 0.0008 12.2 0.7 2 2 0.078 9.8 -1.1 0.0 168 206 118 156 115 164 0.79 # 272 # 892 # -1 # ID=4_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.459 1_20 - 344 Zeta_toxin PF06414.7 201 2.3e-05 16.7 0.0 1 1 3.2e-07 4e-05 16.0 0.0 10 59 156 208 148 234 0.82 # 19221 # 20252 # -1 # ID=1_20;partial=00;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.407 3_3 - 323 AAA_30 PF13604.1 196 0.0002 14.2 0.3 1 1 9.7e-06 0.00061 12.6 0.3 15 128 38 164 27 170 0.55 # 2319 # 3287 # 1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.540 4_2 - 207 AAA_30 PF13604.1 196 0.00038 13.3 0.6 1 1 1.5e-05 0.00092 12.0 0.1 26 106 10 88 2 97 0.75 # 272 # 892 # -1 # ID=4_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.459 2_40 - 325 CPSase_L_D3 PF02787.14 123 0.00042 13.3 0.5 1 1 1.1e-05 0.0013 11.7 0.1 50 98 135 186 128 191 0.79 # 30411 # 31385 # -1 # ID=2_40;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.453 6_1 - 235 HTH_Tnp_1 PF01527.15 76 0.00032 13.9 0.4 1 1 5.6e-06 0.0007 12.8 0.4 4 51 6 58 4 64 0.79 # 65 # 769 # 1 # ID=6_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.530 2_17 - 117 GerE PF00196.14 58 6.9e-13 41.0 0.0 1 1 7.9e-15 9.9e-13 40.5 0.0 4 54 32 82 30 85 0.96 # 14538 # 14888 # 1 # ID=2_17;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.587 1_19 - 612 TraG-D_C PF12696.2 128 3.2e-27 88.1 0.0 1 1 4.3e-29 5.4e-27 87.4 0.0 2 127 416 534 415 535 0.87 # 17383 # 19218 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.419 3_4 - 346 DDE_3 PF13358.1 146 1.7e-28 92.4 0.0 1 1 5.2e-30 3.2e-28 91.5 0.0 2 138 177 310 176 317 0.96 # 3476 # 4513 # -1 # ID=3_4;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.518 6_1 - 235 DDE_3 PF13358.1 146 0.00077 12.5 0.0 1 1 3.7e-05 0.0023 10.9 0.0 31 90 81 141 59 146 0.86 # 65 # 769 # 1 # ID=6_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.530 4_2 - 207 MipZ PF09140.6 261 2.2e-14 46.3 0.8 1 2 3.7e-11 1.6e-09 30.4 0.0 2 47 3 47 2 61 0.88 # 272 # 892 # -1 # ID=4_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.459 4_2 - 207 MipZ PF09140.6 261 2.2e-14 46.3 0.8 2 2 2.6e-06 0.00011 14.6 0.3 96 141 73 118 54 144 0.86 # 272 # 892 # -1 # ID=4_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.459 1_48 - 355 MipZ PF09140.6 261 1.9e-09 30.1 0.0 1 2 3.6e-08 1.5e-06 20.7 0.0 3 39 4 40 2 49 0.91 # 40205 # 41269 # -1 # ID=1_48;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.397 1_48 - 355 MipZ PF09140.6 261 1.9e-09 30.1 0.0 2 2 0.00043 0.018 7.3 0.0 96 128 148 180 137 198 0.82 # 40205 # 41269 # -1 # ID=1_48;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.397 2_41 - 402 MipZ PF09140.6 261 7.1e-06 18.4 0.0 1 2 0.0076 0.31 3.2 0.0 3 50 111 163 109 201 0.73 # 31385 # 32590 # -1 # ID=2_41;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.469 2_41 - 402 MipZ PF09140.6 261 7.1e-06 18.4 0.0 2 2 8.4e-06 0.00035 12.9 0.0 87 136 233 282 220 305 0.87 # 31385 # 32590 # -1 # ID=2_41;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.469 2_24 - 388 DivIC PF04977.10 80 0.00094 11.9 3.5 1 1 1.3e-05 0.0016 11.2 3.5 17 66 75 123 71 124 0.91 # 18498 # 19661 # -1 # ID=2_24;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.588 2_46 - 372 DUF2316 PF10078.4 89 0.015 8.6 9.2 1 2 0.00014 0.017 8.4 2.5 5 45 198 238 193 249 0.88 # 35626 # 36741 # -1 # ID=2_46;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.583 2_46 - 372 DUF2316 PF10078.4 89 0.015 8.6 9.2 2 2 0.0082 1 2.7 0.6 5 42 251 288 247 301 0.86 # 35626 # 36741 # -1 # ID=2_46;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.583 3_3 - 323 AAA PF00004.24 132 1.9e-06 21.3 0.0 1 1 3.5e-08 4.4e-06 20.2 0.0 3 97 45 152 43 181 0.68 # 2319 # 3287 # 1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.540 2_40 - 325 HTH_37 PF13744.1 80 0.00015 14.8 1.3 1 2 0.0091 1.1 2.4 0.1 27 55 9 37 6 43 0.82 # 30411 # 31385 # -1 # ID=2_40;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.453 2_40 - 325 HTH_37 PF13744.1 80 0.00015 14.8 1.3 2 2 3.8e-05 0.0048 10.0 0.1 27 53 156 182 153 186 0.90 # 30411 # 31385 # -1 # ID=2_40;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.453 2_16 - 71 Rrf2 PF02082.15 83 0.0004 13.8 0.0 1 1 3.3e-06 0.00041 13.7 0.0 19 58 18 57 3 70 0.76 # 14341 # 14553 # 1 # ID=2_16;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.559 1_15 - 718 zf-C4_Topoisom PF01396.14 39 0.0016 11.2 1.3 1 1 2.7e-05 0.0034 10.2 1.3 4 21 635 650 632 661 0.78 # 13594 # 15747 # -1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.456 3_3 - 323 TIGR00064 TIGR00064 279 8.9e-05 14.7 0.2 1 1 1.4e-06 0.00017 13.7 0.0 72 111 33 72 4 76 0.73 # 2319 # 3287 # 1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.540 4_2 - 207 cobW PF02492.14 178 0.00031 13.4 0.2 1 2 1.8e-05 0.0023 10.6 0.0 10 38 12 41 3 47 0.86 # 272 # 892 # -1 # ID=4_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.459 4_2 - 207 cobW PF02492.14 178 0.00031 13.4 0.2 2 2 0.019 2.4 0.7 0.1 114 146 115 147 71 170 0.78 # 272 # 892 # -1 # ID=4_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.459 3_3 - 323 AAA_16 PF13191.1 185 4.5e-11 36.3 1.2 1 1 9.1e-12 5.7e-10 32.7 0.3 22 179 38 153 24 162 0.76 # 2319 # 3287 # 1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.540 1_20 - 344 AAA_16 PF13191.1 185 0.0013 12.0 0.0 1 1 2.8e-05 0.0018 11.5 0.0 22 54 161 194 148 302 0.75 # 19221 # 20252 # -1 # ID=1_20;partial=00;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.407 3_3 - 323 AAA_22 PF13401.1 131 6.2e-16 52.0 0.3 1 1 2.2e-17 1.4e-15 50.8 0.3 3 129 39 170 36 172 0.77 # 2319 # 3287 # 1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.540 1_20 - 344 AAA_22 PF13401.1 131 0.00073 12.9 0.0 1 1 2.1e-05 0.0013 12.1 0.0 5 30 164 189 160 241 0.69 # 19221 # 20252 # -1 # ID=1_20;partial=00;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.407 2_23 - 265 HTH_AraC PF00165.18 42 1.2e-16 53.3 4.4 1 2 9.7e-09 1.2e-06 21.5 0.0 4 39 154 188 151 191 0.87 # 17733 # 18527 # 1 # ID=2_23;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.489 2_23 - 265 HTH_AraC PF00165.18 42 1.2e-16 53.3 4.4 2 2 1.9e-12 2.3e-10 33.3 0.3 11 39 209 238 207 240 0.94 # 17733 # 18527 # 1 # ID=2_23;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.489 1_4 - 187 NUMOD1 PF07453.8 37 0.00098 12.2 0.0 1 1 1.5e-05 0.0018 11.4 0.0 20 37 165 182 164 182 0.92 # 2520 # 3080 # 1 # ID=1_4;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.656 1_20 - 344 AAA_29 PF13555.1 62 0.00013 14.7 0.0 1 1 2.3e-06 0.00028 13.6 0.0 20 43 160 183 145 186 0.78 # 19221 # 20252 # -1 # ID=1_20;partial=00;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.407 3_6 - 298 HTH_1 PF00126.22 60 4.9e-16 51.5 0.0 1 1 1.2e-17 1.5e-15 50.0 0.0 2 60 7 65 6 65 0.96 # 5121 # 6014 # 1 # ID=3_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.406 3_4 - 346 LZ_Tnp_IS481 PF13011.1 85 5.9e-06 19.8 0.2 1 1 2.2e-07 1.4e-05 18.6 0.2 12 69 27 82 15 89 0.91 # 3476 # 4513 # -1 # ID=3_4;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.518 2_23 - 265 LZ_Tnp_IS481 PF13011.1 85 0.0011 12.6 0.1 1 2 0.00039 0.024 8.3 0.1 16 40 149 173 145 183 0.86 # 17733 # 18527 # 1 # ID=2_23;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.489 2_23 - 265 LZ_Tnp_IS481 PF13011.1 85 0.0011 12.6 0.1 2 2 0.036 2.2 2.0 0.0 12 69 186 246 176 253 0.65 # 17733 # 18527 # 1 # ID=2_23;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.489 4_2 - 207 SRP54 PF00448.17 196 0.00013 14.7 0.4 1 1 3.9e-06 0.00048 12.8 0.3 11 53 12 49 2 132 0.72 # 272 # 892 # -1 # ID=4_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.459 3_4 - 346 HTH_32 PF13565.1 77 4.6e-12 39.9 2.9 1 2 0.0063 0.2 5.8 0.0 32 77 24 61 8 61 0.81 # 3476 # 4513 # -1 # ID=3_4;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.518 3_4 - 346 HTH_32 PF13565.1 77 4.6e-12 39.9 2.9 2 2 5.8e-13 1.8e-11 38.0 0.3 1 77 56 136 56 136 0.82 # 3476 # 4513 # -1 # ID=3_4;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.518 6_1 - 235 HTH_32 PF13565.1 77 1.6e-06 22.1 0.2 1 1 2.3e-07 7e-06 20.0 0.0 26 76 5 50 2 51 0.83 # 65 # 769 # 1 # ID=6_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.530 3_2 - 555 HTH_32 PF13565.1 77 0.00014 15.9 8.9 1 3 0.0066 0.21 5.7 0.1 33 77 11 52 2 52 0.67 # 665 # 2329 # 1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.556 3_2 - 555 HTH_32 PF13565.1 77 0.00014 15.9 8.9 2 3 0.0023 0.07 7.2 0.1 21 63 61 113 54 120 0.69 # 665 # 2329 # 1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.556 3_2 - 555 HTH_32 PF13565.1 77 0.00014 15.9 8.9 3 3 0.011 0.34 5.0 0.1 1 18 131 148 131 160 0.79 # 665 # 2329 # 1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.556 4_3 - 251 HTH_32 PF13565.1 77 0.00054 14.0 2.6 1 1 2.2e-05 0.00069 13.7 0.8 8 58 149 204 139 218 0.66 # 1187 # 1939 # 1 # ID=4_3;partial=01;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.485 1_38 - 81 HTH_3 PF01381.17 55 3.1e-05 17.1 0.0 1 1 4.5e-07 5.6e-05 16.2 0.0 1 24 10 33 10 35 0.90 # 33418 # 33660 # -1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.449 3_4 - 346 HTH_23 PF13384.1 50 2.2e-11 36.4 2.8 1 1 2.8e-12 5e-11 35.2 0.0 3 50 26 73 24 73 0.94 # 3476 # 4513 # -1 # ID=3_4;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.518 4_3 - 251 HTH_23 PF13384.1 50 2.8e-08 26.5 0.1 1 1 3.3e-09 5.9e-08 25.5 0.1 5 45 171 210 167 216 0.86 # 1187 # 1939 # 1 # ID=4_3;partial=01;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.485 6_1 - 235 HTH_23 PF13384.1 50 7.6e-06 18.8 0.7 1 1 1.3e-05 0.00023 14.0 0.1 28 42 41 55 40 62 0.87 # 65 # 769 # 1 # ID=6_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.530 2_37 - 584 HTH_23 PF13384.1 50 1.2e-05 18.2 0.0 1 1 2.3e-06 4e-05 16.5 0.0 13 45 70 99 67 104 0.88 # 26611 # 28362 # -1 # ID=2_37;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.594 1_4 - 187 HTH_23 PF13384.1 50 1.3e-05 18.0 0.6 1 1 1.8e-06 3.2e-05 16.8 0.0 11 39 154 183 144 184 0.81 # 2520 # 3080 # 1 # ID=1_4;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.656 3_1 - 227 HTH_23 PF13384.1 50 2e-05 17.4 0.0 1 1 3e-06 5.3e-05 16.1 0.0 12 42 192 223 188 226 0.81 # 1 # 681 # 1 # ID=3_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.554 3_2 - 555 HTH_23 PF13384.1 50 0.0044 10.0 0.1 1 2 0.00025 0.0044 10.0 0.1 20 39 34 53 29 57 0.88 # 665 # 2329 # 1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.556 3_2 - 555 HTH_23 PF13384.1 50 0.0044 10.0 0.1 2 2 0.004 0.072 6.1 0.5 32 42 130 140 128 147 0.84 # 665 # 2329 # 1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.556 4_2 - 207 Fer4_NifH PF00142.13 273 1.9e-06 20.4 0.0 1 1 5.5e-08 3.4e-06 19.6 0.0 8 64 10 66 3 89 0.90 # 272 # 892 # -1 # ID=4_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.459 1_48 - 355 Fer4_NifH PF00142.13 273 4e-06 19.4 0.0 1 1 1e-07 6.2e-06 18.7 0.0 7 47 9 49 2 65 0.84 # 40205 # 41269 # -1 # ID=1_48;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.397 1_4 - 187 HTH_7 PF02796.10 45 3.6e-15 48.8 0.1 1 1 3.2e-16 8e-15 47.7 0.1 1 44 141 184 141 185 0.98 # 2520 # 3080 # 1 # ID=1_4;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.656 3_1 - 227 HTH_7 PF02796.10 45 1.3e-09 31.1 0.1 1 1 1.1e-10 2.8e-09 30.0 0.1 1 42 180 219 180 221 0.93 # 1 # 681 # 1 # ID=3_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.554 4_3 - 251 HTH_7 PF02796.10 45 4.8e-09 29.2 0.3 1 2 0.0025 0.063 6.5 0.0 2 26 79 104 79 105 0.86 # 1187 # 1939 # 1 # ID=4_3;partial=01;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.485 4_3 - 251 HTH_7 PF02796.10 45 4.8e-09 29.2 0.3 2 2 1.2e-07 3e-06 20.3 0.0 1 38 165 200 165 200 0.96 # 1187 # 1939 # 1 # ID=4_3;partial=01;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.485 3_2 - 555 HTH_7 PF02796.10 45 3.3e-05 16.9 0.2 1 1 5e-06 0.00013 15.1 0.2 23 43 33 53 30 54 0.93 # 665 # 2329 # 1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.556 3_4 - 346 HTH_7 PF02796.10 45 0.00031 13.9 0.2 1 1 0.00022 0.0055 9.8 0.0 14 38 33 57 21 61 0.76 # 3476 # 4513 # -1 # ID=3_4;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.518 1_38 - 81 HTH_19 PF12844.2 64 0.00034 13.9 0.1 1 1 3.4e-06 0.00042 13.6 0.1 3 25 9 31 7 62 0.84 # 33418 # 33660 # -1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.449 3_3 - 323 NB-ARC PF00931.17 287 0.0005 12.2 0.3 1 1 5.9e-06 0.00074 11.6 0.3 8 104 29 126 22 144 0.74 # 2319 # 3287 # 1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.540 2_16 - 71 FeoC PF09012.5 69 0.00059 12.8 0.0 1 1 5.4e-06 0.00068 12.6 0.0 14 52 24 62 6 66 0.89 # 14341 # 14553 # 1 # ID=2_16;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.559 3_4 - 346 HTH_29 PF13551.1 112 2.2e-18 59.7 0.1 1 1 2.3e-19 5.7e-18 58.4 0.1 1 111 30 139 30 140 0.92 # 3476 # 4513 # -1 # ID=3_4;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.518 3_2 - 555 HTH_29 PF13551.1 112 8.8e-06 19.1 0.5 1 2 5.7e-05 0.0014 12.0 0.1 14 91 33 109 25 121 0.65 # 665 # 2329 # 1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.556 3_2 - 555 HTH_29 PF13551.1 112 8.8e-06 19.1 0.5 2 2 0.018 0.46 3.9 0.0 25 44 128 147 125 155 0.80 # 665 # 2329 # 1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.556 3_1 - 227 HTH_29 PF13551.1 112 2.7e-05 17.5 1.3 1 1 1.2e-05 0.00031 14.1 0.0 10 38 197 224 192 225 0.90 # 1 # 681 # 1 # ID=3_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.554 1_4 - 187 HTH_29 PF13551.1 112 4.1e-05 17.0 3.1 1 1 4.5e-05 0.0011 12.3 1.6 33 108 122 182 115 183 0.64 # 2520 # 3080 # 1 # ID=1_4;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.656 4_3 - 251 HTH_29 PF13551.1 112 0.00079 12.8 3.6 1 2 0.071 1.8 2.0 0.7 34 70 148 180 132 182 0.65 # 1187 # 1939 # 1 # ID=4_3;partial=01;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.485 4_3 - 251 HTH_29 PF13551.1 112 0.00079 12.8 3.6 2 2 4e-05 0.001 12.5 0.0 3 45 175 216 173 220 0.88 # 1187 # 1939 # 1 # ID=4_3;partial=01;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.485 6_1 - 235 DDE_Tnp_IS66 PF03050.9 271 2.2e-11 36.6 0.3 1 1 2.3e-13 2.8e-11 36.3 0.3 5 132 10 144 6 174 0.87 # 65 # 769 # 1 # ID=6_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.530 4_2 - 207 DUF1611 PF07755.6 301 4.2e-06 18.8 0.2 1 1 5.2e-08 6.5e-06 18.1 0.2 124 200 13 90 11 107 0.86 # 272 # 892 # -1 # ID=4_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.459 3_3 - 323 Arch_ATPase PF01637.13 234 4.6e-05 16.4 0.2 1 1 8.6e-07 0.00011 15.2 0.2 8 135 30 142 27 164 0.68 # 2319 # 3287 # 1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.540 3_3 - 323 AAA_5 PF07728.9 139 0.0001 15.3 0.1 1 1 7e-06 0.00088 12.2 0.2 5 90 46 149 43 152 0.85 # 2319 # 3287 # 1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.540 3_3 - 323 ResIII PF04851.10 184 1.2e-05 18.4 0.2 1 2 1.7e-05 0.0022 11.1 0.3 29 101 44 110 20 121 0.72 # 2319 # 3287 # 1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.540 3_3 - 323 ResIII PF04851.10 184 1.2e-05 18.4 0.2 2 2 0.00058 0.072 6.1 0.0 131 162 109 140 96 153 0.63 # 2319 # 3287 # 1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.540 1_19 - 612 TrwB_AAD_bind PF10412.4 386 6e-21 67.6 0.0 1 1 1.5e-22 9.5e-21 67.0 0.0 165 380 331 548 306 552 0.86 # 17383 # 19218 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.419 3_3 - 323 TrwB_AAD_bind PF10412.4 386 0.00018 13.4 0.5 1 3 3.3e-05 0.0021 9.9 0.0 14 44 39 69 35 76 0.83 # 2319 # 3287 # 1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.540 3_3 - 323 TrwB_AAD_bind PF10412.4 386 0.00018 13.4 0.5 2 3 0.042 2.6 -0.3 0.0 234 275 115 158 112 169 0.78 # 2319 # 3287 # 1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.540 3_3 - 323 TrwB_AAD_bind PF10412.4 386 0.00018 13.4 0.5 3 3 0.073 4.6 -1.1 0.0 128 182 251 306 240 311 0.71 # 2319 # 3287 # 1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.540 4_2 - 207 TIGR01968 TIGR01968 261 4.7e-12 38.7 1.5 1 2 2.1e-09 1.3e-07 24.1 0.0 2 39 2 39 1 47 0.90 # 272 # 892 # -1 # ID=4_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.459 4_2 - 207 TIGR01968 TIGR01968 261 4.7e-12 38.7 1.5 2 2 2.5e-06 0.00015 14.0 0.3 109 178 73 144 56 195 0.77 # 272 # 892 # -1 # ID=4_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.459 1_48 - 355 TIGR01968 TIGR01968 261 8.8e-12 37.8 0.1 1 2 2.5e-10 1.6e-08 27.1 0.0 4 39 4 39 1 51 0.87 # 40205 # 41269 # -1 # ID=1_48;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.397 1_48 - 355 TIGR01968 TIGR01968 261 8.8e-12 37.8 0.1 2 2 0.00011 0.0068 8.6 0.0 106 146 144 185 127 194 0.84 # 40205 # 41269 # -1 # ID=1_48;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.397 3_3 - 323 AAA_18 PF13238.1 129 0.00011 15.7 0.0 1 1 1.7e-06 0.00021 14.8 0.0 1 23 43 90 43 138 0.67 # 2319 # 3287 # 1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.540 2_39 - 425 IMS_HHH PF11798.3 32 4.2e-08 26.2 0.1 1 1 7.8e-10 9.8e-08 25.0 0.1 5 32 174 201 169 201 0.89 # 29055 # 30329 # 1 # ID=2_39;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.540 1_4 - 187 HTH_psq PF05225.11 45 0.00036 13.3 0.0 1 1 7.4e-06 0.00093 12.0 0.0 20 38 165 183 164 185 0.91 # 2520 # 3080 # 1 # ID=1_4;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.656 1_20 - 344 DUF258 PF03193.11 161 0.0003 13.2 0.0 1 1 3.9e-06 0.00049 12.5 0.0 31 59 158 187 144 220 0.82 # 19221 # 20252 # -1 # ID=1_20;partial=00;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.407 2_45 - 170 TIGR01406 TIGR01406 231 0.00041 12.9 0.0 1 1 5e-06 0.00063 12.3 0.0 3 59 106 156 105 159 0.81 # 35124 # 35633 # -1 # ID=2_45;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.592 3_3 - 323 DUF87 PF01935.12 229 0.00074 12.6 0.2 1 3 5.2e-05 0.0065 9.5 0.0 26 52 43 69 40 73 0.85 # 2319 # 3287 # 1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.540 3_3 - 323 DUF87 PF01935.12 229 0.00074 12.6 0.2 2 3 0.083 10 -1.0 0.0 135 194 79 139 68 151 0.68 # 2319 # 3287 # 1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.540 3_3 - 323 DUF87 PF01935.12 229 0.00074 12.6 0.2 3 3 0.067 8.4 -0.7 0.0 121 195 198 299 171 308 0.59 # 2319 # 3287 # 1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.540 3_4 - 346 HTH_28 PF13518.1 52 1.2e-09 31.3 0.1 1 1 4.2e-10 8.8e-09 28.5 0.0 1 50 29 79 29 82 0.91 # 3476 # 4513 # -1 # ID=3_4;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.518 3_1 - 227 HTH_28 PF13518.1 52 1.4e-06 21.5 0.1 1 1 1.9e-07 4e-06 20.0 0.1 4 38 189 224 188 225 0.92 # 1 # 681 # 1 # ID=3_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.554 1_4 - 187 HTH_28 PF13518.1 52 4.7e-06 19.8 0.1 1 1 2.3e-07 4.7e-06 19.8 0.1 8 34 156 183 149 184 0.83 # 2520 # 3080 # 1 # ID=1_4;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.656 4_3 - 251 HTH_28 PF13518.1 52 1.5e-05 18.2 0.7 1 1 1.8e-06 3.7e-05 17.0 0.1 4 39 175 209 172 218 0.87 # 1187 # 1939 # 1 # ID=4_3;partial=01;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.485 6_1 - 235 HTH_28 PF13518.1 52 7.3e-05 16.0 1.2 1 1 1.5e-05 0.00032 14.0 1.2 22 36 40 54 13 55 0.76 # 65 # 769 # 1 # ID=6_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.530 3_2 - 555 HTH_28 PF13518.1 52 0.0023 11.2 0.0 1 2 0.00011 0.0023 11.2 0.0 15 35 34 54 32 64 0.90 # 665 # 2329 # 1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.556 3_2 - 555 HTH_28 PF13518.1 52 0.0023 11.2 0.0 2 2 0.074 1.5 2.2 0.4 26 37 129 140 125 145 0.87 # 665 # 2329 # 1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.556 3_3 - 323 TIGR00041 TIGR00041 196 0.00041 13.0 0.0 1 1 5.7e-06 0.00071 12.2 0.0 2 54 38 96 37 122 0.74 # 2319 # 3287 # 1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.540 2_40 - 325 HTH_24 PF13412.1 48 2.4e-05 16.9 0.2 1 1 2.5e-06 0.00016 14.3 0.0 13 39 157 182 153 184 0.84 # 30411 # 31385 # -1 # ID=2_40;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.453 2_16 - 71 HTH_24 PF13412.1 48 0.00019 14.1 0.0 1 1 4.2e-06 0.00026 13.6 0.0 7 45 8 52 3 55 0.78 # 14341 # 14553 # 1 # ID=2_16;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.559 2_23 - 265 HTH_18 PF12833.2 81 1.2e-15 50.7 0.2 1 1 2.2e-17 2.7e-15 49.5 0.0 1 79 164 240 164 241 0.96 # 17733 # 18527 # 1 # ID=2_23;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.489 2_16 - 71 DUF2250 PF10007.4 93 5.5e-05 16.3 0.0 1 1 4.7e-07 5.9e-05 16.2 0.0 25 57 27 59 8 63 0.89 # 14341 # 14553 # 1 # ID=2_16;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.559 1_4 - 187 HTH_10 PF04967.7 53 7.8e-05 15.5 0.3 1 2 0.066 8.3 -0.6 0.1 3 16 124 137 123 156 0.74 # 2520 # 3080 # 1 # ID=1_4;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.656 1_4 - 187 HTH_10 PF04967.7 53 7.8e-05 15.5 0.3 2 2 4.1e-06 0.00051 12.9 0.0 28 45 166 183 164 184 0.93 # 2520 # 3080 # 1 # ID=1_4;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.656 3_4 - 346 HTH_33 PF13592.1 60 1.8e-09 30.3 0.7 1 1 6.2e-11 7.8e-09 28.3 0.3 3 50 108 155 107 157 0.94 # 3476 # 4513 # -1 # ID=3_4;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.518 4_2 - 207 LpxK PF02606.9 326 6.6e-05 15.1 0.1 1 1 8.4e-07 0.0001 14.5 0.1 46 71 11 36 2 38 0.94 # 272 # 892 # -1 # ID=4_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.459 1_20 - 344 DEAD PF00270.24 169 0.0003 13.5 0.0 1 1 3.9e-06 0.00048 12.9 0.0 6 33 154 182 151 246 0.77 # 19221 # 20252 # -1 # ID=1_20;partial=00;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.407 1_38 - 81 HTH_31 PF13560.1 64 1.1e-06 22.0 0.1 1 1 1e-08 1.3e-06 21.8 0.1 5 36 9 40 6 61 0.85 # 33418 # 33660 # -1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.449 3_3 - 323 DUF2075 PF09848.4 352 2.2e-06 20.0 0.1 1 1 2.6e-08 3.2e-06 19.5 0.1 2 97 41 138 40 165 0.71 # 2319 # 3287 # 1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.540 3_14 - 117 HTH_OrfB_IS605 PF12323.3 46 1e-18 59.7 0.0 1 1 1.3e-20 1.6e-18 59.0 0.0 1 45 1 45 1 46 0.98 # 11777 # 12127 # 1 # ID=3_14;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.467 1_20 - 344 T2SE PF00437.15 272 1.9e-52 171.0 0.0 1 1 3.7e-54 2.3e-52 170.7 0.0 12 267 25 312 15 316 0.88 # 19221 # 20252 # -1 # ID=1_20;partial=00;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.407 3_3 - 323 T2SE PF00437.15 272 3.3e-06 19.3 0.7 1 1 2.6e-07 1.6e-05 17.1 0.7 110 161 22 72 6 137 0.81 # 2319 # 3287 # 1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.540 3_3 - 323 NACHT PF05729.7 166 0.0006 12.7 0.2 1 1 1.1e-05 0.0014 11.5 0.2 1 28 41 68 41 140 0.77 # 2319 # 3287 # 1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.540 3_3 - 323 UPF0079 PF02367.12 123 0.00014 14.7 0.0 1 1 4.3e-06 0.00027 13.8 0.0 3 45 28 70 26 114 0.84 # 2319 # 3287 # 1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.540 1_20 - 344 UPF0079 PF02367.12 123 0.00059 12.7 0.0 1 1 1.7e-05 0.0011 11.9 0.0 8 39 156 187 151 196 0.83 # 19221 # 20252 # -1 # ID=1_20;partial=00;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.407 1_20 - 344 AAA_17 PF13207.1 121 5.7e-05 17.2 0.0 1 1 2.9e-06 0.00012 16.1 0.0 2 43 166 207 165 251 0.81 # 19221 # 20252 # -1 # ID=1_20;partial=00;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.407 4_2 - 207 AAA_17 PF13207.1 121 0.0001 16.3 0.0 1 1 3.2e-06 0.00013 16.0 0.0 9 80 12 86 11 180 0.71 # 272 # 892 # -1 # ID=4_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.459 3_3 - 323 AAA_17 PF13207.1 121 0.00018 15.5 0.1 1 1 1e-05 0.00042 14.4 0.0 1 40 42 89 42 186 0.63 # 2319 # 3287 # 1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.540 3_3 - 323 TIGR02211 TIGR02211 221 0.00057 12.3 0.0 1 1 7.3e-06 0.00092 11.7 0.0 11 51 20 60 12 86 0.88 # 2319 # 3287 # 1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.540 1_20 - 344 AAA_25 PF13481.1 194 0.00038 13.1 0.0 1 1 4.3e-06 0.00053 12.6 0.0 22 51 152 181 140 249 0.87 # 19221 # 20252 # -1 # ID=1_20;partial=00;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.407 3_3 - 323 AAA_14 PF13173.1 128 5.1e-06 19.6 0.0 1 1 1.7e-07 2.2e-05 17.6 0.0 2 96 40 164 39 193 0.62 # 2319 # 3287 # 1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.540 4_2 - 207 VirC1 PF07015.6 231 1e-14 47.4 0.2 1 1 3.2e-16 2e-14 46.4 0.2 1 131 1 123 1 174 0.80 # 272 # 892 # -1 # ID=4_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.459 1_48 - 355 VirC1 PF07015.6 231 0.00016 14.0 0.1 1 1 7.8e-06 0.00049 12.4 0.0 1 40 1 40 1 46 0.89 # 40205 # 41269 # -1 # ID=1_48;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.397 3_4 - 346 HTH_Tnp_ISL3 PF13542.1 52 0.00038 12.9 0.4 1 1 2.3e-05 0.0014 11.0 0.4 18 49 30 62 26 62 0.79 # 3476 # 4513 # -1 # ID=3_4;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.518 3_2 - 555 HTH_Tnp_ISL3 PF13542.1 52 0.00051 12.5 0.0 1 1 2.7e-05 0.0017 10.8 0.0 30 49 34 53 32 55 0.90 # 665 # 2329 # 1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.556 1_20 - 344 AAA_33 PF13671.1 143 2.2e-05 17.6 0.0 1 1 1.5e-06 9.5e-05 15.5 0.0 2 25 166 191 165 257 0.69 # 19221 # 20252 # -1 # ID=1_20;partial=00;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.407 3_3 - 323 AAA_33 PF13671.1 143 0.0002 14.5 0.0 1 1 7.3e-06 0.00046 13.3 0.0 1 45 42 100 42 132 0.60 # 2319 # 3287 # 1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.540 1_4 - 187 CENP-B_N PF04218.8 53 3.5e-05 16.4 0.1 1 1 6.4e-07 8e-05 15.3 0.0 18 43 157 182 154 186 0.86 # 2520 # 3080 # 1 # ID=1_4;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.656 4_2 - 207 ArgK PF03308.11 267 0.00013 14.0 0.0 1 1 5.1e-06 0.00032 12.7 0.0 39 72 12 45 5 53 0.90 # 272 # 892 # -1 # ID=4_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.459 1_48 - 355 ArgK PF03308.11 267 0.001 11.1 0.0 1 1 3.7e-05 0.0023 9.9 0.0 38 72 11 45 7 62 0.88 # 40205 # 41269 # -1 # ID=1_48;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.397 1_19 - 612 T4SS-DNA_transf PF02534.9 469 2.4e-145 477.8 0.0 1 1 2.4e-147 2.9e-145 477.5 0.0 2 461 102 571 101 578 0.98 # 17383 # 19218 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.419 2_16 - 71 HTH_15 PF12324.3 77 5.2e-05 16.1 0.0 1 2 5.1e-06 0.00063 12.6 0.0 34 65 20 51 16 55 0.91 # 14341 # 14553 # 1 # ID=2_16;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.559 2_16 - 71 HTH_15 PF12324.3 77 5.2e-05 16.1 0.0 2 2 0.01 1.2 2.1 0.0 12 28 53 69 49 70 0.87 # 14341 # 14553 # 1 # ID=2_16;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.559 2_16 - 71 HTH_45 PF14947.1 77 0.00027 14.0 0.1 1 1 3.1e-06 0.00038 13.5 0.1 18 52 22 58 2 63 0.71 # 14341 # 14553 # 1 # ID=2_16;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.559 4_2 - 207 NTPase_1 PF03266.10 168 0.00039 13.4 0.1 1 2 1.1e-05 0.0014 11.5 0.0 7 58 10 66 5 94 0.80 # 272 # 892 # -1 # ID=4_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.459 4_2 - 207 NTPase_1 PF03266.10 168 0.00039 13.4 0.1 2 2 0.084 11 -1.0 0.1 76 99 149 172 119 176 0.66 # 272 # 892 # -1 # ID=4_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.459 3_4 - 346 DUF1836 PF08876.6 105 0.0006 12.8 0.0 1 1 1.4e-05 0.0017 11.4 0.0 47 89 13 55 10 64 0.86 # 3476 # 4513 # -1 # ID=3_4;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.518 2_46 - 372 TIGR00422 TIGR00422 863 0.025 5.3 17.2 1 1 0.00031 0.039 4.7 17.0 719 856 133 270 70 276 0.82 # 35626 # 36741 # -1 # ID=2_46;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.583 4_2 - 207 ATP_bind_1 PF03029.12 238 5.9e-05 15.9 0.0 1 1 2.5e-06 0.0001 15.1 0.0 6 42 12 48 10 74 0.85 # 272 # 892 # -1 # ID=4_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.459 1_20 - 344 ATP_bind_1 PF03029.12 238 0.00058 12.6 0.0 1 1 2e-05 0.00085 12.1 0.0 2 23 169 190 168 206 0.87 # 19221 # 20252 # -1 # ID=1_20;partial=00;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.407 1_48 - 355 ATP_bind_1 PF03029.12 238 0.00062 12.5 0.1 1 1 9.7e-05 0.004 9.9 0.0 6 36 12 42 10 45 0.94 # 40205 # 41269 # -1 # ID=1_48;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.397 6_1 - 235 DDE_Tnp_IS240 PF13610.1 140 3.3e-52 169.4 0.0 1 1 3.7e-54 4.6e-52 168.9 0.0 4 139 75 212 73 213 0.99 # 65 # 769 # 1 # ID=6_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.530 1_15 - 718 Toprim_Crpt PF13342.1 62 4.5e-20 64.3 2.6 1 1 3.6e-22 4.5e-20 64.3 2.6 1 58 652 711 652 713 0.92 # 13594 # 15747 # -1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.456 3_4 - 346 HTH_17 PF12728.2 51 0.00016 15.2 0.3 1 2 8.6e-05 0.0054 10.3 0.0 2 45 41 90 40 92 0.87 # 3476 # 4513 # -1 # ID=3_4;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.518 3_4 - 346 HTH_17 PF12728.2 51 0.00016 15.2 0.3 2 2 0.067 4.2 1.0 0.0 13 25 127 139 122 147 0.86 # 3476 # 4513 # -1 # ID=3_4;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.518 4_3 - 251 HTH_17 PF12728.2 51 0.00022 14.7 0.1 1 2 0.024 1.5 2.4 0.0 16 29 89 102 89 112 0.84 # 1187 # 1939 # 1 # ID=4_3;partial=01;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.485 4_3 - 251 HTH_17 PF12728.2 51 0.00022 14.7 0.1 2 2 0.00018 0.011 9.2 0.0 5 25 187 207 185 218 0.88 # 1187 # 1939 # 1 # ID=4_3;partial=01;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.485 1_4 - 187 HTH_11 PF08279.7 55 7.6e-05 15.6 0.0 1 2 0.052 6.6 -0.2 0.0 33 47 74 88 72 94 0.67 # 2520 # 3080 # 1 # ID=1_4;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.656 1_4 - 187 HTH_11 PF08279.7 55 7.6e-05 15.6 0.0 2 2 4.6e-06 0.00057 12.8 0.0 19 37 165 183 162 184 0.91 # 2520 # 3080 # 1 # ID=1_4;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.656 2_9 - 129 BOF PF04076.8 103 8.2e-44 140.9 0.7 1 1 7.9e-46 9.9e-44 140.7 0.7 2 102 25 125 24 126 0.98 # 6955 # 7341 # -1 # ID=2_9;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.457 3_3 - 323 PIF1 PF05970.9 364 3.6e-05 16.0 0.0 1 1 6.3e-07 7.9e-05 14.9 0.0 7 127 27 149 23 167 0.68 # 2319 # 3287 # 1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.540 2_16 - 71 TrmB PF01978.14 68 4.1e-05 16.5 0.0 1 1 8.1e-07 5.1e-05 16.2 0.0 22 56 24 58 22 68 0.91 # 14341 # 14553 # 1 # ID=2_16;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.559 3_1 - 227 TrmB PF01978.14 68 0.00015 14.7 0.0 1 1 4.8e-06 0.0003 13.7 0.0 21 45 197 221 188 224 0.88 # 1 # 681 # 1 # ID=3_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.554 1_3 - 526 Seryl_tRNA_N PF02403.17 108 0.00096 12.4 8.8 1 3 0.0038 0.47 3.8 0.1 39 104 227 293 206 297 0.90 # 633 # 2210 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.475 1_3 - 526 Seryl_tRNA_N PF02403.17 108 0.00096 12.4 8.8 2 3 0.0012 0.15 5.4 0.1 27 59 324 356 312 377 0.85 # 633 # 2210 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.475 1_3 - 526 Seryl_tRNA_N PF02403.17 108 0.00096 12.4 8.8 3 3 0.00086 0.11 5.8 1.7 17 107 396 485 390 486 0.75 # 633 # 2210 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.475 2_45 - 170 RNase_T PF00929.19 164 5.3e-07 23.3 0.0 1 1 6.3e-09 7.9e-07 22.7 0.0 1 55 106 152 106 158 0.89 # 35124 # 35633 # -1 # ID=2_45;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.592 1_27 - 918 AAA_10 PF12846.2 304 2.5e-35 115.5 0.0 1 1 1e-36 4.3e-35 114.8 0.0 3 294 539 825 538 832 0.93 # 25489 # 28242 # -1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.445 3_3 - 323 AAA_10 PF12846.2 304 1.3e-06 21.3 0.1 1 2 1.3e-05 0.00052 12.7 0.0 3 34 42 73 40 106 0.73 # 2319 # 3287 # 1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.540 3_3 - 323 AAA_10 PF12846.2 304 1.3e-06 21.3 0.1 2 2 0.0019 0.08 5.5 0.0 216 245 120 150 79 207 0.83 # 2319 # 3287 # 1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.540 4_2 - 207 AAA_10 PF12846.2 304 1.6e-05 17.6 0.0 1 1 7e-07 2.9e-05 16.8 0.0 11 47 12 50 10 69 0.82 # 272 # 892 # -1 # ID=4_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.459 2_16 - 71 HTH_20 PF12840.2 61 0.00023 14.2 0.0 1 1 4.1e-06 0.00026 14.0 0.0 19 59 9 59 4 61 0.84 # 14341 # 14553 # 1 # ID=2_16;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.559 2_8 - 330 HTH_20 PF12840.2 61 0.00042 13.4 0.0 1 2 0.0057 0.36 4.0 0.0 24 46 106 128 101 129 0.89 # 5425 # 6414 # 1 # ID=2_8;partial=00;start_type=TTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.523 2_8 - 330 HTH_20 PF12840.2 61 0.00042 13.4 0.0 2 2 0.00075 0.047 6.8 0.0 19 58 217 263 190 266 0.79 # 5425 # 6414 # 1 # ID=2_8;partial=00;start_type=TTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.523 1_3 - 526 AAA_13 PF13166.1 712 0.0033 9.1 17.5 1 2 2.3e-05 0.0028 9.3 2.9 365 468 251 356 202 376 0.54 # 633 # 2210 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.475 1_3 - 526 AAA_13 PF13166.1 712 0.0033 9.1 17.5 2 2 0.00032 0.04 5.5 7.0 322 439 392 519 372 525 0.75 # 633 # 2210 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.475 1_48 - 355 ArsA_ATPase PF02374.10 305 5.8e-11 35.1 0.1 1 2 9.1e-12 5.7e-10 31.9 0.1 5 46 6 47 1 61 0.91 # 40205 # 41269 # -1 # ID=1_48;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.397 1_48 - 355 ArsA_ATPase PF02374.10 305 5.8e-11 35.1 0.1 2 2 0.026 1.7 0.8 0.0 122 141 146 165 138 167 0.83 # 40205 # 41269 # -1 # ID=1_48;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.397 4_2 - 207 ArsA_ATPase PF02374.10 305 3.7e-08 25.9 0.2 1 1 9.7e-10 6e-08 25.2 0.2 5 45 6 46 1 66 0.90 # 272 # 892 # -1 # ID=4_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.459 1_48 - 355 AAA_31 PF13614.1 157 9.1e-15 48.1 0.0 1 2 1.9e-11 7.7e-10 32.1 0.0 1 66 2 64 2 91 0.83 # 40205 # 41269 # -1 # ID=1_48;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.397 1_48 - 355 AAA_31 PF13614.1 157 9.1e-15 48.1 0.0 2 2 7.9e-06 0.00033 13.8 0.1 112 154 144 186 112 187 0.91 # 40205 # 41269 # -1 # ID=1_48;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.397 4_2 - 207 AAA_31 PF13614.1 157 2.2e-08 27.4 0.2 1 2 3e-08 1.2e-06 21.7 0.0 1 39 2 40 2 53 0.94 # 272 # 892 # -1 # ID=4_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.459 4_2 - 207 AAA_31 PF13614.1 157 2.2e-08 27.4 0.2 2 2 0.014 0.6 3.2 0.0 115 152 74 109 59 114 0.83 # 272 # 892 # -1 # ID=4_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.459 2_41 - 402 AAA_31 PF13614.1 157 0.00056 13.1 0.1 1 1 9.4e-05 0.0039 10.3 0.0 108 147 235 273 231 279 0.86 # 31385 # 32590 # -1 # ID=2_41;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.469 1_20 - 344 IstB_IS21 PF01695.12 178 0.00083 12.0 0.0 1 1 1.4e-05 0.0017 11.0 0.0 45 66 161 182 144 186 0.92 # 19221 # 20252 # -1 # ID=1_20;partial=00;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.407 2_16 - 71 FaeA PF04703.7 62 1.6e-32 104.8 0.0 1 1 1.4e-34 1.7e-32 104.6 0.0 1 61 1 70 1 70 0.99 # 14341 # 14553 # 1 # ID=2_16;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.559 2_39 - 425 DNA_pol_lambd_f PF10391.4 52 0.00038 13.2 0.0 1 1 1e-05 0.0013 11.5 0.0 5 29 183 207 179 218 0.85 # 29055 # 30329 # 1 # ID=2_39;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.540 2_42 - 314 Glyco_trans_4_3 PF12000.3 171 2.6e-06 20.3 0.1 1 2 0.00013 0.016 8.0 0.0 14 84 112 182 97 188 0.77 # 33005 # 33946 # 1 # ID=2_42;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.545 2_42 - 314 Glyco_trans_4_3 PF12000.3 171 2.6e-06 20.3 0.1 2 2 3.4e-05 0.0043 9.9 0.0 19 65 209 256 201 261 0.90 # 33005 # 33946 # 1 # ID=2_42;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.545 # # Program: hmmsearch # Version: 3.1b1 (May 2013) # Pipeline mode: SEARCH # Query file: /tmp/f7c8172f-8727-4664-88aa-b828b57f7f6d # Target file: checkm_output/bins/pm327/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm327/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/f7c8172f-8727-4664-88aa-b828b57f7f6d checkm_output/bins/pm327/genes.faa # Current dir: /mnt/data/azomer/reads-for-assembly/files/output/allcontigs/output_1512029421078392887 # Date: Thu Nov 30 10:02:58 2017 # [ok]