# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_34 - 228 Cons_hypoth95 PF03602.10 183 3.3e-06 18.9 0.0 1 2 0.00016 0.0099 7.5 0.0 112 168 18 76 8 83 0.68 # 32565 # 33248 # 1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.572 1_34 - 228 Cons_hypoth95 PF03602.10 183 3.3e-06 18.9 0.0 2 2 4e-05 0.0026 9.4 0.0 41 62 162 183 145 218 0.78 # 32565 # 33248 # 1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.572 1_16 - 647 ABC_tran PF00005.22 137 1.1e-31 102.2 0.0 1 1 3.8e-33 2.5e-31 101.1 0.0 1 136 24 172 24 173 0.88 # 14823 # 16763 # -1 # ID=1_16;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.493 1_34 - 228 TIGR00095 TIGR00095 194 0.00026 12.6 0.0 1 2 0.002 0.13 3.9 0.0 123 138 19 34 8 79 0.74 # 32565 # 33248 # 1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.572 1_34 - 228 TIGR00095 TIGR00095 194 0.00026 12.6 0.0 2 2 0.00024 0.016 6.8 0.0 53 86 164 199 155 218 0.77 # 32565 # 33248 # 1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.572 1_30 - 425 HHH_5 PF14520.1 60 0.00027 13.4 0.0 1 1 1.2e-05 0.00076 12.0 0.0 9 37 184 212 172 218 0.92 # 28905 # 30179 # -1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.517 1_16 - 647 FtsK_SpoIIIE PF01580.13 205 8.7e-05 14.3 0.2 1 1 3.7e-06 0.00024 12.9 0.2 33 58 29 54 17 57 0.81 # 14823 # 16763 # -1 # ID=1_16;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.493 1_16 - 647 MobB PF03205.9 140 0.00044 12.3 0.8 1 2 3e-05 0.0019 10.2 0.1 2 19 36 53 35 55 0.90 # 14823 # 16763 # -1 # ID=1_16;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.493 1_16 - 647 MobB PF03205.9 140 0.00044 12.3 0.8 2 2 0.055 3.5 -0.4 0.1 20 37 186 203 183 208 0.84 # 14823 # 16763 # -1 # ID=1_16;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.493 1_26 - 215 CbiA PF01656.18 195 7.9e-10 30.7 0.1 1 1 1.8e-11 1.1e-09 30.2 0.1 1 145 4 124 4 173 0.79 # 26061 # 26705 # 1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.426 1_34 - 228 MethyltransfD12 PF02086.10 260 0.00049 11.8 0.0 1 2 0.034 2.2 -0.1 0.0 175 188 18 31 10 89 0.79 # 32565 # 33248 # 1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.572 1_34 - 228 MethyltransfD12 PF02086.10 260 0.00049 11.8 0.0 2 2 4e-05 0.0026 9.5 0.0 20 46 163 189 148 197 0.78 # 32565 # 33248 # 1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.572 1_8 - 96 Sigma70_r4_2 PF08281.7 54 3.1e-08 25.3 0.1 1 1 1.4e-09 9.2e-08 23.8 0.0 10 54 21 64 12 64 0.83 # 5700 # 5987 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.448 1_12 - 283 TIGR00573 TIGR00573 217 3.2e-15 48.1 0.0 1 1 8.8e-17 5.6e-15 47.3 0.0 12 181 107 274 103 281 0.80 # 9676 # 10524 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.563 1_34 - 228 Methyltransf_26 PF13659.1 117 5.6e-12 38.1 0.1 1 2 2.1e-07 1.3e-05 17.5 0.0 57 114 7 71 2 74 0.69 # 32565 # 33248 # 1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.572 1_34 - 228 Methyltransf_26 PF13659.1 117 5.6e-12 38.1 0.1 2 2 9.7e-08 6.2e-06 18.6 0.0 4 45 167 207 164 223 0.82 # 32565 # 33248 # 1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.572 1_16 - 647 SMC_N PF02463.14 220 3.7e-07 21.8 0.2 1 2 0.00015 0.0095 7.4 0.3 25 42 35 52 24 58 0.84 # 14823 # 16763 # -1 # ID=1_16;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.493 1_16 - 647 SMC_N PF02463.14 220 3.7e-07 21.8 0.2 2 2 6.8e-06 0.00044 11.8 0.0 125 213 127 218 59 222 0.76 # 14823 # 16763 # -1 # ID=1_16;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.493 1_8 - 96 GerE PF00196.14 58 8.9e-07 20.5 0.0 1 1 1.9e-08 1.2e-06 20.1 0.0 3 49 21 67 19 72 0.89 # 5700 # 5987 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.448 1_53 - 310 TraG-D_C PF12696.2 128 3.8e-05 15.9 0.5 1 1 1.4e-06 8.6e-05 14.7 0.5 23 90 4 71 2 101 0.81 # 45900 # 46829 # -1 # ID=1_53;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.499 1_26 - 215 MipZ PF09140.6 261 1.5e-08 26.2 2.3 1 2 0.0008 0.051 4.8 0.5 7 25 8 26 2 38 0.71 # 26061 # 26705 # 1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.426 1_26 - 215 MipZ PF09140.6 261 1.5e-08 26.2 2.3 2 2 9e-09 5.8e-07 21.1 0.1 70 133 45 108 25 125 0.84 # 26061 # 26705 # 1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.426 1_34 - 228 UPF0020 PF01170.13 180 9.4e-06 17.6 0.0 1 2 0.00033 0.021 6.6 0.0 103 121 17 35 4 88 0.71 # 32565 # 33248 # 1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.572 1_34 - 228 UPF0020 PF01170.13 180 9.4e-06 17.6 0.0 2 2 6.2e-05 0.0039 9.0 0.0 28 54 163 189 158 221 0.67 # 32565 # 33248 # 1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.572 1_16 - 647 AAA_21 PF13304.1 303 3.7e-11 35.7 0.1 1 2 5.1e-07 3.3e-05 16.2 0.2 2 22 37 57 36 120 0.81 # 14823 # 16763 # -1 # ID=1_16;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.493 1_16 - 647 AAA_21 PF13304.1 303 3.7e-11 35.7 0.1 2 2 2.4e-07 1.5e-05 17.3 0.0 236 298 144 203 87 206 0.93 # 14823 # 16763 # -1 # ID=1_16;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.493 1_34 - 228 N6_N4_Mtase PF01555.13 231 7.6e-37 119.2 0.0 1 2 1.9e-15 1.2e-13 43.3 0.0 1 114 21 124 21 141 0.88 # 32565 # 33248 # 1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.572 1_34 - 228 N6_N4_Mtase PF01555.13 231 7.6e-37 119.2 0.0 2 2 5.6e-25 3.6e-23 74.5 0.0 169 228 141 200 127 203 0.90 # 32565 # 33248 # 1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.572 1_28 - 327 Hydantoinase_A PF01968.13 290 4.5e-09 28.0 0.2 1 2 1.7e-06 0.00011 13.6 0.1 66 98 154 185 141 192 0.79 # 27514 # 28494 # 1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.439 1_28 - 327 Hydantoinase_A PF01968.13 290 4.5e-09 28.0 0.2 2 2 5.5e-06 0.00035 11.9 0.0 211 263 244 296 201 301 0.86 # 27514 # 28494 # 1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.439 1_16 - 647 AAA_16 PF13191.1 185 4.5e-07 22.3 0.4 1 1 1.2e-07 7.4e-06 18.3 0.4 4 166 15 211 12 225 0.48 # 14823 # 16763 # -1 # ID=1_16;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.493 1_16 - 647 AAA_22 PF13401.1 131 3.7e-05 16.2 0.5 1 1 6.2e-06 0.0004 12.8 0.5 5 100 35 176 31 208 0.59 # 14823 # 16763 # -1 # ID=1_16;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.493 1_46 - 283 Methyltransf_27 PF13708.1 194 1.7e-67 219.0 0.0 1 1 3.6e-69 2.3e-67 218.5 0.0 2 194 85 278 84 278 0.96 # 39887 # 40735 # 1 # ID=1_46;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.504 1_16 - 647 AAA_29 PF13555.1 62 5.2e-07 21.5 0.0 1 1 2.1e-08 1.3e-06 20.2 0.0 22 43 33 54 23 71 0.80 # 14823 # 16763 # -1 # ID=1_16;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.493 1_28 - 327 TIGR02350 TIGR02350 596 5.8e-05 13.5 0.6 1 3 0.083 5.3 -2.9 0.0 362 381 80 99 67 130 0.59 # 27514 # 28494 # 1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.439 1_28 - 327 TIGR02350 TIGR02350 596 5.8e-05 13.5 0.6 2 3 0.00011 0.0068 6.7 0.0 175 200 159 181 142 198 0.82 # 27514 # 28494 # 1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.439 1_28 - 327 TIGR02350 TIGR02350 596 5.8e-05 13.5 0.6 3 3 0.00048 0.031 4.5 0.0 271 348 220 295 205 308 0.85 # 27514 # 28494 # 1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.439 1_12 - 283 RNase_H_2 PF13482.1 164 1.5e-05 17.2 0.0 1 1 1.7e-06 0.00011 14.3 0.0 1 119 105 248 105 258 0.61 # 9676 # 10524 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.563 1_45 - 84 HTH_3 PF01381.17 55 1.8e-05 16.9 0.0 1 2 1e-06 6.5e-05 15.1 0.0 1 34 6 39 6 45 0.90 # 39056 # 39307 # -1 # ID=1_45;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.552 1_45 - 84 HTH_3 PF01381.17 55 1.8e-05 16.9 0.0 2 2 0.083 5.3 -0.7 0.0 39 52 67 80 65 83 0.66 # 39056 # 39307 # -1 # ID=1_45;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.552 1_45 - 84 HTH_23 PF13384.1 50 2.3e-05 16.3 0.3 1 2 7e-06 0.00023 13.2 0.1 17 33 14 30 6 38 0.86 # 39056 # 39307 # -1 # ID=1_45;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.552 1_45 - 84 HTH_23 PF13384.1 50 2.3e-05 16.3 0.3 2 2 0.048 1.5 1.0 0.0 5 22 63 82 59 83 0.75 # 39056 # 39307 # -1 # ID=1_45;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.552 1_8 - 96 HTH_23 PF13384.1 50 2.3e-05 16.3 0.0 1 1 1e-06 3.2e-05 15.9 0.0 12 41 31 60 24 73 0.76 # 5700 # 5987 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.448 1_45 - 84 HTH_19 PF12844.2 64 5e-05 15.6 0.0 1 1 1.2e-06 7.4e-05 15.1 0.0 7 53 9 56 5 67 0.87 # 39056 # 39307 # -1 # ID=1_45;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.552 1_45 - 84 DUF1870 PF08965.5 118 0.00019 13.4 1.2 1 1 3.7e-06 0.00024 13.1 1.2 1 75 1 78 1 81 0.69 # 39056 # 39307 # -1 # ID=1_45;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.552 1_8 - 96 HTH_29 PF13551.1 112 9.5e-05 14.9 0.0 1 1 2.1e-06 0.00014 14.3 0.0 8 36 33 60 27 76 0.79 # 5700 # 5987 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.448 1_59 - 397 OrfB_Zn_ribbon PF07282.6 69 6.7e-28 88.5 2.4 1 1 1.6e-29 1e-27 88.0 0.6 1 67 311 378 311 380 0.98 # 52127 # 53317 # -1 # ID=1_59;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.488 1_12 - 283 DNA_pol_A_exo1 PF01612.15 176 7.2e-06 17.8 0.0 1 1 3.9e-07 2.5e-05 16.1 0.0 20 95 102 196 86 206 0.79 # 9676 # 10524 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.563 1_44 - 61 UBA PF00627.26 37 7.4e-05 14.9 0.2 1 2 0.019 1.2 1.5 0.0 6 16 4 14 1 15 0.84 # 38843 # 39025 # 1 # ID=1_44;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.541 1_44 - 61 UBA PF00627.26 37 7.4e-05 14.9 0.2 2 2 1.3e-05 0.00084 11.5 0.0 5 22 27 44 24 44 0.87 # 38843 # 39025 # 1 # ID=1_44;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.541 1_50 - 108 Methyltransf_31 PF13847.1 152 0.00044 12.2 0.0 1 1 7.9e-06 0.0005 11.9 0.0 18 61 29 71 27 98 0.84 # 44851 # 45174 # 1 # ID=1_50;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.457 1_26 - 215 TIGR01968 TIGR01968 261 4.9e-05 14.7 2.1 1 2 8.1e-06 0.00026 12.3 0.8 3 50 3 44 1 49 0.80 # 26061 # 26705 # 1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.426 1_26 - 215 TIGR01968 TIGR01968 261 4.9e-05 14.7 2.1 2 2 0.017 0.54 1.5 0.0 101 140 63 102 49 123 0.75 # 26061 # 26705 # 1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.426 1_28 - 327 TIGR01968 TIGR01968 261 0.00028 12.2 1.5 1 1 3.5e-05 0.0011 10.2 1.4 46 128 63 155 60 215 0.74 # 27514 # 28494 # 1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.439 1_30 - 425 IMS_HHH PF11798.3 32 2.9e-09 28.9 0.3 1 1 1.3e-10 8.5e-09 27.5 0.3 3 32 172 201 170 201 0.93 # 28905 # 30179 # -1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.517 1_34 - 228 Methyltransf_15 PF09445.5 164 0.00038 12.3 0.0 1 2 0.029 1.9 0.3 0.0 53 79 4 29 2 33 0.91 # 32565 # 33248 # 1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.572 1_34 - 228 Methyltransf_15 PF09445.5 164 0.00038 12.3 0.0 2 2 4.2e-05 0.0027 9.5 0.0 3 31 166 194 164 209 0.86 # 32565 # 33248 # 1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.572 1_16 - 647 DUF258 PF03193.11 161 8e-06 17.4 0.4 1 2 7.1e-07 4.6e-05 14.9 0.2 32 55 31 54 7 63 0.83 # 14823 # 16763 # -1 # ID=1_16;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.493 1_16 - 647 DUF258 PF03193.11 161 8e-06 17.4 0.4 2 2 0.043 2.8 -0.6 0.0 52 101 187 232 167 248 0.64 # 14823 # 16763 # -1 # ID=1_16;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.493 1_12 - 283 TIGR01406 TIGR01406 231 2.6e-17 55.1 0.0 1 1 7.5e-19 4.8e-17 54.3 0.0 4 170 106 268 104 281 0.76 # 9676 # 10524 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.563 1_16 - 647 DUF87 PF01935.12 229 0.0006 11.9 0.3 1 1 2.3e-05 0.0015 10.6 0.3 26 42 37 53 22 56 0.85 # 14823 # 16763 # -1 # ID=1_16;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.493 1_8 - 96 HTH_28 PF13518.1 52 9.4e-05 14.7 0.0 1 1 4.3e-06 0.00028 13.2 0.0 9 38 33 62 26 75 0.86 # 5700 # 5987 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.448 1_59 - 397 TIGR00344 TIGR00344 847 3.5e-05 14.1 0.7 1 1 8.3e-07 5.3e-05 13.5 0.7 681 778 189 283 180 296 0.78 # 52127 # 53317 # -1 # ID=1_59;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.488 1_12 - 283 TIGR01298 TIGR01298 200 2.4e-07 22.6 1.0 1 1 3.6e-08 2.3e-06 19.5 1.0 93 189 167 267 97 275 0.81 # 9676 # 10524 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.563 1_16 - 647 MMR_HSR1 PF01926.18 116 0.00012 14.4 0.2 1 2 1.5e-05 0.00097 11.4 0.1 2 18 37 53 36 65 0.92 # 14823 # 16763 # -1 # ID=1_16;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.493 1_16 - 647 MMR_HSR1 PF01926.18 116 0.00012 14.4 0.2 2 2 0.064 4.1 -0.3 0.0 24 60 197 231 153 305 0.64 # 14823 # 16763 # -1 # ID=1_16;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.493 1_45 - 84 HTH_31 PF13560.1 64 4.1e-07 22.5 2.0 1 2 1e-08 6.4e-07 21.9 1.2 3 43 3 43 2 57 0.86 # 39056 # 39307 # -1 # ID=1_45;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.552 1_45 - 84 HTH_31 PF13560.1 64 4.1e-07 22.5 2.0 2 2 0.1 6.4 -0.6 0.0 17 34 65 72 44 82 0.58 # 39056 # 39307 # -1 # ID=1_45;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.552 1_59 - 397 HTH_OrfB_IS605 PF12323.3 46 3.3e-21 66.7 0.0 1 1 1e-22 6.7e-21 65.7 0.0 1 45 3 49 1 50 0.92 # 52127 # 53317 # -1 # ID=1_59;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.488 1_28 - 327 StbA PF06406.6 318 7.9e-157 513.3 1.2 1 1 1.4e-158 8.9e-157 513.2 1.2 1 318 1 319 1 319 1.00 # 27514 # 28494 # 1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.439 1_16 - 647 AAA_17 PF13207.1 121 4.9e-05 16.5 0.6 1 1 2.6e-06 0.00017 14.7 0.6 2 18 37 53 36 140 0.85 # 14823 # 16763 # -1 # ID=1_16;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.493 1_16 - 647 TIGR02211 TIGR02211 221 1.9e-70 228.7 0.0 1 1 9e-72 2.9e-70 228.2 0.0 2 219 5 221 4 223 0.98 # 14823 # 16763 # -1 # ID=1_16;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.493 1_11 - 87 TIGR02211 TIGR02211 221 0.00012 13.6 0.0 1 1 3.8e-06 0.00012 13.6 0.0 121 168 15 66 1 80 0.81 # 9370 # 9630 # 1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.540 1_16 - 647 AAA_25 PF13481.1 194 3.4e-05 15.6 0.1 1 2 6.9e-06 0.00044 11.9 0.0 28 50 29 51 11 73 0.84 # 14823 # 16763 # -1 # ID=1_16;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.493 1_16 - 647 AAA_25 PF13481.1 194 3.4e-05 15.6 0.1 2 2 0.02 1.3 0.7 0.0 163 188 178 203 168 208 0.71 # 14823 # 16763 # -1 # ID=1_16;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.493 1_16 - 647 AAA_15 PF13175.1 415 9.5e-05 13.8 0.0 1 2 0.00018 0.012 6.9 0.0 23 43 35 55 7 73 0.78 # 14823 # 16763 # -1 # ID=1_16;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.493 1_16 - 647 AAA_15 PF13175.1 415 9.5e-05 13.8 0.0 2 2 0.00093 0.06 4.5 0.0 371 413 164 205 152 207 0.89 # 14823 # 16763 # -1 # ID=1_16;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.493 1_26 - 215 VirC1 PF07015.6 231 0.00026 12.4 0.0 1 2 0.00073 0.047 5.0 0.0 3 29 3 29 1 36 0.81 # 26061 # 26705 # 1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.426 1_26 - 215 VirC1 PF07015.6 231 0.00026 12.4 0.0 2 2 0.00052 0.033 5.5 0.0 87 190 77 181 59 194 0.70 # 26061 # 26705 # 1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.426 1_8 - 96 HTH_Tnp_ISL3 PF13542.1 52 3.9e-05 15.1 0.0 1 1 9.7e-07 6.2e-05 14.5 0.0 29 50 38 59 34 60 0.89 # 5700 # 5987 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.448 1_16 - 647 AAA_33 PF13671.1 143 0.00068 11.8 0.3 1 1 4e-05 0.0026 9.9 0.3 1 17 36 52 36 215 0.87 # 14823 # 16763 # -1 # ID=1_16;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.493 1_22 - 197 PaaX PF07848.7 70 0.00021 13.6 0.0 1 1 6.7e-06 0.00043 12.6 0.0 15 68 23 80 13 82 0.77 # 23272 # 23862 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.653 1_7 - 178 TIGR00922 TIGR00922 172 0.00068 11.5 0.0 1 1 1.3e-05 0.00084 11.2 0.0 55 103 61 109 32 142 0.81 # 4725 # 5258 # -1 # ID=1_7;partial=00;start_type=GTG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.438 1_12 - 283 RNase_T PF00929.19 164 2e-26 85.5 0.0 1 1 4e-28 2.6e-26 85.1 0.0 1 163 105 262 105 263 0.95 # 9676 # 10524 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.563 1_16 - 647 AAA_10 PF12846.2 304 1.4e-05 16.9 0.0 1 1 8e-07 5.1e-05 15.0 0.0 4 28 37 62 35 68 0.77 # 14823 # 16763 # -1 # ID=1_16;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.493 1_44 - 61 Yae1_N PF09811.4 39 3.5e-05 15.6 0.4 1 1 1.7e-06 5.4e-05 15.0 0.4 15 26 9 20 8 26 0.92 # 38843 # 39025 # 1 # ID=1_44;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.541 1_43 - 313 Yae1_N PF09811.4 39 0.0016 10.3 2.4 1 1 8.2e-05 0.0026 9.6 2.4 5 25 254 274 251 277 0.46 # 37842 # 38780 # 1 # ID=1_43;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.537 # # Program: hmmsearch # Version: 3.1b1 (May 2013) # Pipeline mode: SEARCH # Query file: /tmp/08117e36-4919-40ec-b0af-2830f044ad57 # Target file: checkm_output/bins/pm325/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm325/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/08117e36-4919-40ec-b0af-2830f044ad57 checkm_output/bins/pm325/genes.faa # Current dir: /mnt/data/azomer/reads-for-assembly/files/output/allcontigs/output_1512029421078392887 # Date: Thu Nov 30 10:02:57 2017 # [ok]