# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_9 - 864 ABC_tran PF00005.22 137 0.00086 12.5 0.0 1 1 2.1e-05 0.0021 11.3 0.0 13 96 476 599 472 614 0.60 # 4944 # 7535 # 1 # ID=1_9;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.549 1_49 - 95 HTH_22 PF13309.1 64 2.4e-06 20.2 0.1 1 1 8.2e-08 8.3e-06 18.5 0.0 21 64 6 44 1 44 0.85 # 42830 # 43114 # -1 # ID=1_49;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.523 1_26 - 106 NAD_binding_11 PF14833.1 122 0.00079 12.4 0.0 1 1 1.1e-05 0.0011 12.0 0.0 54 100 28 74 22 80 0.86 # 25418 # 25735 # 1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.541 3_3 - 425 Cdd1 PF11731.3 93 0.00034 13.5 0.0 1 1 8.1e-06 0.00081 12.3 0.0 10 47 178 215 141 227 0.85 # 2255 # 3529 # -1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.540 3_25 - 278 N6_Mtase PF02384.11 311 2e-10 33.1 0.0 1 1 3e-12 3e-10 32.5 0.0 25 117 139 237 130 253 0.84 # 17551 # 18384 # 1 # ID=3_25;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.522 4_1 - 230 rve_3 PF13683.1 67 5.6e-30 95.7 0.4 1 1 1.7e-31 5.6e-30 95.7 0.4 1 67 145 211 145 211 0.98 # 17 # 706 # -1 # ID=4_1;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.496 2_6 - 236 rve_3 PF13683.1 67 3.5e-18 57.9 0.0 1 1 2.6e-19 8.8e-18 56.6 0.0 2 67 159 224 158 224 0.97 # 3817 # 4524 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.555 1_48 - 270 rve_3 PF13683.1 67 2.1e-17 55.4 0.1 1 1 1.3e-18 4.2e-17 54.4 0.1 3 67 196 261 194 261 0.97 # 41979 # 42788 # -1 # ID=1_48;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.580 3_30 - 150 HTH_40 PF14493.1 91 1.6e-05 18.0 0.0 1 1 4e-07 4.1e-05 16.7 0.0 3 47 23 68 21 98 0.81 # 21811 # 22260 # 1 # ID=3_30;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.342 1_21 - 401 HTH_38 PF13936.1 44 0.00096 11.7 0.4 1 1 6.2e-05 0.0063 9.1 0.5 5 30 95 120 89 135 0.80 # 18508 # 19710 # 1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.511 4_2 - 89 DUF1492 PF07374.6 100 0.00037 13.5 0.0 1 1 8.4e-06 0.00084 12.4 0.0 73 93 23 43 5 46 0.85 # 862 # 1128 # -1 # ID=4_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.483 1_23 - 965 MobB PF03205.9 140 0.0011 11.6 0.0 1 1 2.7e-05 0.0027 10.3 0.0 5 33 209 237 206 243 0.86 # 20996 # 23890 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.552 1_37 - 323 DUF3584 PF12128.3 1201 0.0017 8.6 28.3 1 1 2.2e-05 0.0022 8.2 28.3 379 543 76 246 43 282 0.52 # 31795 # 32763 # 1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.595 1_49 - 95 TetR_N PF00440.18 47 2.4e-05 16.9 0.1 1 1 7e-07 7.1e-05 15.4 0.0 4 35 13 41 12 42 0.93 # 42830 # 43114 # -1 # ID=1_49;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.523 3_1 - 399 CbiA PF01656.18 195 2.5e-18 59.1 0.0 1 1 4.8e-20 4.8e-18 58.1 0.0 1 141 108 288 108 325 0.75 # 3 # 1199 # 1 # ID=3_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.472 3_7 - 146 MethyltransfD12 PF02086.10 260 0.00099 11.5 0.0 1 1 1.4e-05 0.0014 11.0 0.0 20 46 83 109 68 117 0.79 # 5402 # 5839 # 1 # ID=3_7;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.616 1_21 - 401 Sigma70_r4_2 PF08281.7 54 0.00045 12.6 0.1 1 1 3.6e-05 0.0012 11.3 0.1 13 36 98 120 97 134 0.85 # 18508 # 19710 # 1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.511 3_2 - 325 Sigma70_r4_2 PF08281.7 54 0.00055 12.4 0.0 1 1 4.8e-05 0.0016 10.8 0.0 24 50 158 184 153 185 0.89 # 1199 # 2173 # 1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.446 4_2 - 89 Sigma70_r4_2 PF08281.7 54 0.00059 12.3 0.0 1 1 3.4e-05 0.0011 11.3 0.0 17 49 12 44 3 44 0.89 # 862 # 1128 # -1 # ID=4_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.483 1_48 - 270 rve PF00665.21 120 7.7e-31 99.7 0.0 1 1 3.4e-32 1.2e-30 99.1 0.0 4 119 109 222 106 223 0.97 # 41979 # 42788 # -1 # ID=1_48;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.580 2_6 - 236 rve PF00665.21 120 2.9e-24 78.4 0.0 1 1 1.2e-25 4.2e-24 77.9 0.0 4 119 67 186 64 187 0.96 # 3817 # 4524 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.555 4_1 - 230 rve PF00665.21 120 1.3e-23 76.3 0.0 1 1 7.2e-25 2.4e-23 75.5 0.0 3 120 60 174 58 174 0.94 # 17 # 706 # -1 # ID=4_1;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.496 4_2 - 89 Terminase_5 PF06056.7 58 1.7e-05 17.3 0.1 1 1 4.8e-07 2.4e-05 16.8 0.1 15 48 23 56 20 66 0.87 # 862 # 1128 # -1 # ID=4_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.483 1_49 - 95 Terminase_5 PF06056.7 58 5.7e-05 15.6 0.0 1 1 2e-06 0.0001 14.8 0.0 12 37 21 46 12 56 0.88 # 42830 # 43114 # -1 # ID=1_49;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.523 3_7 - 146 Methyltransf_26 PF13659.1 117 6.3e-07 22.4 0.1 1 1 1.8e-08 9e-07 21.9 0.1 4 44 87 126 84 141 0.83 # 5402 # 5839 # 1 # ID=3_7;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.616 3_25 - 278 Methyltransf_26 PF13659.1 117 0.00028 13.8 0.0 1 2 0.048 2.4 1.2 0.0 9 48 28 82 24 149 0.75 # 17551 # 18384 # 1 # ID=3_25;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.522 3_25 - 278 Methyltransf_26 PF13659.1 117 0.00028 13.8 0.0 2 2 6.2e-05 0.0031 10.5 0.0 3 63 171 238 170 267 0.81 # 17551 # 18384 # 1 # ID=3_25;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.522 3_2 - 325 CPSase_L_D3 PF02787.14 123 0.0002 14.1 0.5 1 1 1.2e-05 0.00061 12.5 0.1 49 98 134 186 125 191 0.83 # 1199 # 2173 # 1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.446 2_7 - 132 CPSase_L_D3 PF02787.14 123 0.00089 12.0 0.1 1 2 0.00046 0.023 7.4 0.0 8 37 24 53 17 65 0.75 # 4653 # 5048 # -1 # ID=2_7;partial=00;start_type=ATG;rbs_motif=4Base/6BMM;rbs_spacer=13-15bp;gc_cont=0.520 2_7 - 132 CPSase_L_D3 PF02787.14 123 0.00089 12.0 0.1 2 2 0.014 0.71 2.6 0.0 44 80 88 122 81 128 0.79 # 4653 # 5048 # -1 # ID=2_7;partial=00;start_type=ATG;rbs_motif=4Base/6BMM;rbs_spacer=13-15bp;gc_cont=0.520 4_2 - 89 HTH_Tnp_1 PF01527.15 76 3.5e-22 71.2 0.0 1 1 1.4e-23 4.7e-22 70.7 0.0 1 75 1 71 1 72 0.96 # 862 # 1128 # -1 # ID=4_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.483 2_7 - 132 HTH_Tnp_1 PF01527.15 76 5.6e-22 70.5 0.2 1 1 2.9e-23 9.9e-22 69.7 0.2 2 74 18 97 17 99 0.91 # 4653 # 5048 # -1 # ID=2_7;partial=00;start_type=ATG;rbs_motif=4Base/6BMM;rbs_spacer=13-15bp;gc_cont=0.520 1_49 - 95 HTH_Tnp_1 PF01527.15 76 2.9e-18 58.6 0.2 1 1 1.1e-19 3.6e-18 58.3 0.2 4 76 3 74 1 74 0.94 # 42830 # 43114 # -1 # ID=1_49;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.523 3_30 - 150 GerE PF00196.14 58 8e-07 21.3 0.0 1 1 1.3e-08 1.3e-06 20.6 0.0 2 55 17 70 16 73 0.96 # 21811 # 22260 # 1 # ID=3_30;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.342 1_23 - 965 TraG-D_C PF12696.2 128 2.6e-19 62.3 0.0 1 1 4.8e-21 4.9e-19 61.4 0.0 1 126 439 560 439 562 0.83 # 20996 # 23890 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.552 3_1 - 399 MipZ PF09140.6 261 6.1e-06 18.4 0.0 1 2 0.0026 0.27 3.1 0.0 3 50 108 160 106 190 0.73 # 3 # 1199 # 1 # ID=3_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.472 3_1 - 399 MipZ PF09140.6 261 6.1e-06 18.4 0.0 2 2 2.8e-06 0.00028 12.9 0.0 87 136 230 279 217 302 0.87 # 3 # 1199 # 1 # ID=3_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.472 3_7 - 146 UPF0020 PF01170.13 180 0.00084 11.9 0.0 1 1 1.1e-05 0.0011 11.4 0.0 27 68 82 112 78 138 0.70 # 5402 # 5839 # 1 # ID=3_7;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.616 1_38 - 81 DDE_Tnp_1 PF01609.16 213 0.00011 14.7 0.1 1 1 1.3e-06 0.00013 14.4 0.1 169 190 3 25 1 34 0.87 # 32822 # 33064 # -1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.551 1_39 - 589 Ala_racemase_N PF01168.15 218 1.3e-05 17.8 0.0 1 1 2.4e-07 2.4e-05 16.8 0.0 5 157 39 196 32 226 0.76 # 34575 # 36341 # 1 # ID=1_39;partial=00;start_type=ATG;rbs_motif=4Base/6BMM;rbs_spacer=13-15bp;gc_cont=0.479 1_49 - 95 Sigma70_r4 PF04545.11 50 0.00029 13.1 1.0 1 2 2.8e-05 0.0028 9.9 0.1 13 34 15 36 11 37 0.83 # 42830 # 43114 # -1 # ID=1_49;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.523 1_49 - 95 Sigma70_r4 PF04545.11 50 0.00029 13.1 1.0 2 2 0.039 3.9 -0.1 0.1 7 10 76 79 56 88 0.62 # 42830 # 43114 # -1 # ID=1_49;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.523 1_7 - 75 zf-dskA_traR PF01258.12 36 5.8e-10 31.8 7.6 1 1 8.4e-12 8.5e-10 31.2 7.6 2 35 33 66 31 67 0.92 # 3984 # 4208 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.502 3_2 - 325 HTH_37 PF13744.1 80 0.00013 14.7 1.3 1 2 0.0091 0.92 2.4 0.1 27 55 9 37 6 43 0.82 # 1199 # 2173 # 1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.446 3_2 - 325 HTH_37 PF13744.1 80 0.00013 14.7 1.3 2 2 3.5e-05 0.0035 10.1 0.1 27 53 156 182 135 186 0.92 # 1199 # 2173 # 1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.446 3_7 - 146 N6_N4_Mtase PF01555.13 231 1.2e-25 83.3 0.0 1 2 0.00035 0.035 6.4 0.0 72 114 6 44 1 59 0.79 # 5402 # 5839 # 1 # ID=3_7;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.616 3_7 - 146 N6_N4_Mtase PF01555.13 231 1.2e-25 83.3 0.0 2 2 3.6e-25 3.6e-23 75.1 0.0 169 228 61 120 52 123 0.92 # 5402 # 5839 # 1 # ID=3_7;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.616 1_48 - 270 rve_2 PF13333.1 52 1e-16 53.7 0.1 1 1 3.3e-18 1.7e-16 53.1 0.1 1 50 213 267 213 268 0.93 # 41979 # 42788 # -1 # ID=1_48;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.580 4_1 - 230 rve_2 PF13333.1 52 5.4e-06 19.4 2.1 1 1 1.1e-07 5.4e-06 19.4 2.1 1 51 164 218 164 218 0.93 # 17 # 706 # -1 # ID=4_1;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.496 1_49 - 95 MerR_1 PF13411.1 69 4.4e-05 16.2 0.1 1 1 1.5e-06 7.6e-05 15.4 0.1 1 23 23 45 23 84 0.86 # 42830 # 43114 # -1 # ID=1_49;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.523 2_7 - 132 MerR_1 PF13411.1 69 0.00028 13.6 0.2 1 1 1.8e-05 0.0009 12.0 0.0 1 24 40 63 40 69 0.95 # 4653 # 5048 # -1 # ID=2_7;partial=00;start_type=ATG;rbs_motif=4Base/6BMM;rbs_spacer=13-15bp;gc_cont=0.520 1_23 - 965 cobW PF02492.14 178 0.00088 11.7 0.0 1 1 1.7e-05 0.0017 10.7 0.0 5 38 209 241 206 292 0.68 # 20996 # 23890 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.552 1_23 - 965 AAA_16 PF13191.1 185 6.1e-06 19.2 1.4 1 2 4.2e-06 0.00021 14.2 0.0 22 56 202 236 198 264 0.88 # 20996 # 23890 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.552 1_23 - 965 AAA_16 PF13191.1 185 6.1e-06 19.2 1.4 2 2 0.045 2.3 1.1 1.6 88 138 860 917 768 946 0.65 # 20996 # 23890 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.552 1_9 - 864 AAA_16 PF13191.1 185 0.00015 14.7 0.0 1 1 1.4e-05 0.00068 12.6 0.0 26 56 476 507 461 595 0.86 # 4944 # 7535 # 1 # ID=1_9;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.549 1_23 - 965 AAA_22 PF13401.1 131 0.00021 14.4 0.0 1 2 2.1e-05 0.0022 11.1 0.0 8 31 208 231 202 344 0.80 # 20996 # 23890 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.552 1_23 - 965 AAA_22 PF13401.1 131 0.00021 14.4 0.0 2 2 0.076 7.6 -0.4 0.0 88 100 780 796 697 818 0.59 # 20996 # 23890 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.552 4_2 - 89 LZ_Tnp_IS481 PF13011.1 85 1.1e-06 21.9 0.0 1 1 2.7e-08 1.3e-06 21.6 0.0 6 49 3 45 1 68 0.87 # 862 # 1128 # -1 # ID=4_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.483 1_49 - 95 LZ_Tnp_IS481 PF13011.1 85 2e-05 17.9 0.1 1 1 8.2e-07 4.2e-05 16.8 0.0 17 49 14 46 2 65 0.88 # 42830 # 43114 # -1 # ID=1_49;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.523 1_39 - 589 Orn_Arg_deC_N PF02784.11 251 1.3e-29 96.0 0.0 1 1 1.6e-31 1.6e-29 95.7 0.0 6 249 37 278 32 280 0.86 # 34575 # 36341 # 1 # ID=1_39;partial=00;start_type=ATG;rbs_motif=4Base/6BMM;rbs_spacer=13-15bp;gc_cont=0.479 1_49 - 95 HTH_Tnp_IS630 PF01710.11 120 1.5e-06 20.8 0.1 1 1 1.7e-08 1.7e-06 20.7 0.1 13 82 17 90 6 94 0.73 # 42830 # 43114 # -1 # ID=1_49;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.523 1_37 - 323 Mnd1 PF03962.10 188 0.073 5.6 29.4 1 2 0.0013 0.13 4.8 18.0 62 152 111 202 49 212 0.84 # 31795 # 32763 # 1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.595 1_37 - 323 Mnd1 PF03962.10 188 0.073 5.6 29.4 2 2 0.0018 0.18 4.3 4.2 69 124 221 281 202 287 0.54 # 31795 # 32763 # 1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.595 2_16 - 2729 adh_short PF00106.20 167 7.9e-25 80.6 0.0 1 1 2e-26 2e-24 79.3 0.0 2 166 605 777 604 778 0.90 # 20063 # 28249 # 1 # ID=2_16;partial=00;start_type=ATG;rbs_motif=AGxAG;rbs_spacer=5-10bp;gc_cont=0.402 1_49 - 95 HTH_3 PF01381.17 55 7.2e-06 18.8 0.1 1 2 4.3e-07 4.4e-05 16.3 0.0 4 36 15 48 13 52 0.86 # 42830 # 43114 # -1 # ID=1_49;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.523 1_49 - 95 HTH_3 PF01381.17 55 7.2e-06 18.8 0.1 2 2 0.046 4.6 0.2 0.0 39 51 80 92 69 94 0.73 # 42830 # 43114 # -1 # ID=1_49;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.523 2_7 - 132 HTH_23 PF13384.1 50 1.8e-10 33.2 0.2 1 1 2.3e-11 5.8e-10 31.6 0.0 3 47 24 69 22 72 0.90 # 4653 # 5048 # -1 # ID=2_7;partial=00;start_type=ATG;rbs_motif=4Base/6BMM;rbs_spacer=13-15bp;gc_cont=0.520 4_2 - 89 HTH_23 PF13384.1 50 2e-10 33.0 0.0 1 1 1.4e-11 3.6e-10 32.2 0.0 9 48 13 50 7 52 0.89 # 862 # 1128 # -1 # ID=4_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.483 1_49 - 95 HTH_23 PF13384.1 50 4.4e-09 28.8 0.7 1 1 8e-10 2e-08 26.7 0.0 10 40 14 45 9 52 0.87 # 42830 # 43114 # -1 # ID=1_49;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.523 3_17 - 678 HTH_23 PF13384.1 50 0.00061 12.4 0.0 1 1 8.1e-05 0.0021 10.7 0.0 13 46 154 184 145 188 0.84 # 10880 # 12913 # 1 # ID=3_17;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.554 4_2 - 89 HTH_7 PF02796.10 45 3.8e-05 16.5 0.3 1 1 1.4e-06 7.1e-05 15.6 0.0 2 39 2 39 2 43 0.90 # 862 # 1128 # -1 # ID=4_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.483 1_49 - 95 HTH_7 PF02796.10 45 0.0001 15.1 0.1 1 1 8.6e-06 0.00044 13.1 0.0 13 43 14 44 8 46 0.89 # 42830 # 43114 # -1 # ID=1_49;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.523 1_49 - 95 HTH_19 PF12844.2 64 9.1e-06 18.7 0.1 1 2 1.4e-06 0.00014 14.8 0.0 9 38 19 49 16 62 0.80 # 42830 # 43114 # -1 # ID=1_49;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.523 1_49 - 95 HTH_19 PF12844.2 64 9.1e-06 18.7 0.1 2 2 0.014 1.4 2.0 0.1 20 36 64 79 59 90 0.67 # 42830 # 43114 # -1 # ID=1_49;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.523 2_7 - 132 HTH_29 PF13551.1 112 4.9e-07 22.9 0.3 1 1 1.9e-08 9.5e-07 21.9 0.0 8 69 36 96 28 114 0.72 # 4653 # 5048 # -1 # ID=2_7;partial=00;start_type=ATG;rbs_motif=4Base/6BMM;rbs_spacer=13-15bp;gc_cont=0.520 4_2 - 89 HTH_29 PF13551.1 112 2.5e-06 20.6 0.1 1 1 5.7e-08 2.9e-06 20.4 0.1 3 37 13 46 12 86 0.83 # 862 # 1128 # -1 # ID=4_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.483 3_21 - 383 OrfB_Zn_ribbon PF07282.6 69 9.6e-27 85.5 0.7 1 1 2.4e-28 2.4e-26 84.2 0.7 1 67 284 351 284 353 0.98 # 14614 # 15762 # 1 # ID=3_21;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.513 1_23 - 965 Arch_ATPase PF01637.13 234 6.7e-05 15.6 0.0 1 1 1.7e-06 0.00017 14.2 0.0 27 75 211 253 203 329 0.84 # 20996 # 23890 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.552 1_23 - 965 TrwB_AAD_bind PF10412.4 386 3.5e-150 492.7 0.0 1 1 9.6e-152 4.8e-150 492.3 0.0 2 386 191 581 190 581 0.99 # 20996 # 23890 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.552 1_9 - 864 TrwB_AAD_bind PF10412.4 386 3.8e-05 15.3 0.0 1 1 1.5e-06 7.4e-05 14.4 0.0 16 71 475 536 470 545 0.79 # 4944 # 7535 # 1 # ID=1_9;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.549 3_3 - 425 IMS_HHH PF11798.3 32 3.6e-08 26.1 0.1 1 1 7.8e-10 7.9e-08 25.0 0.1 5 32 174 201 169 201 0.89 # 2255 # 3529 # -1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.540 1_9 - 864 DUF87 PF01935.12 229 2.5e-05 17.1 0.0 1 1 1.8e-06 9e-05 15.3 0.0 26 213 477 655 474 670 0.64 # 4944 # 7535 # 1 # ID=1_9;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.549 1_23 - 965 DUF87 PF01935.12 229 0.00026 13.8 0.1 1 1 2.5e-05 0.0012 11.5 0.0 11 57 195 237 180 253 0.82 # 20996 # 23890 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.552 4_2 - 89 HTH_28 PF13518.1 52 5.2e-10 32.2 0.1 1 1 2.1e-11 7.2e-10 31.7 0.1 3 37 12 46 10 65 0.91 # 862 # 1128 # -1 # ID=4_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.483 2_7 - 132 HTH_28 PF13518.1 52 2.6e-08 26.7 0.0 1 1 7.7e-10 2.6e-08 26.7 0.0 1 41 27 68 27 73 0.91 # 4653 # 5048 # -1 # ID=2_7;partial=00;start_type=ATG;rbs_motif=4Base/6BMM;rbs_spacer=13-15bp;gc_cont=0.520 1_49 - 95 HTH_28 PF13518.1 52 1e-07 24.8 0.1 1 1 6.3e-09 2.1e-07 23.8 0.1 1 35 10 45 10 47 0.90 # 42830 # 43114 # -1 # ID=1_49;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.523 3_2 - 325 HTH_24 PF13412.1 48 2.3e-05 16.7 0.1 1 1 1.3e-06 0.00013 14.3 0.0 13 39 157 182 153 184 0.84 # 1199 # 2173 # 1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.446 1_49 - 95 HTH_30 PF13556.1 59 0.00022 13.7 0.5 1 2 8.9e-06 0.0009 11.8 0.1 5 37 15 47 12 73 0.86 # 42830 # 43114 # -1 # ID=1_49;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.523 1_49 - 95 HTH_30 PF13556.1 59 0.00022 13.7 0.5 2 2 0.028 2.8 0.6 0.2 29 38 68 77 68 88 0.81 # 42830 # 43114 # -1 # ID=1_49;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.523 3_21 - 383 TIGR00344 TIGR00344 847 1.2e-05 16.2 0.5 1 1 1.8e-07 1.8e-05 15.7 0.5 680 777 161 255 155 269 0.79 # 14614 # 15762 # 1 # ID=3_21;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.513 1_49 - 95 HTH_10 PF04967.7 53 4.4e-05 16.0 0.1 1 2 2.9e-06 0.00029 13.4 0.0 21 47 20 46 19 48 0.92 # 42830 # 43114 # -1 # ID=1_49;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.523 1_49 - 95 HTH_10 PF04967.7 53 4.4e-05 16.0 0.1 2 2 0.044 4.5 -0.0 0.1 3 14 76 87 70 89 0.82 # 42830 # 43114 # -1 # ID=1_49;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.523 1_49 - 95 HTH_31 PF13560.1 64 7.4e-05 15.9 0.1 1 1 1.6e-06 0.00016 14.8 0.1 12 53 20 61 11 68 0.88 # 42830 # 43114 # -1 # ID=1_49;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.523 3_21 - 383 HTH_OrfB_IS605 PF12323.3 46 2e-09 29.6 0.5 1 1 4.9e-11 5e-09 28.4 0.5 19 46 1 28 1 28 0.94 # 14614 # 15762 # 1 # ID=3_21;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.513 1_23 - 965 AAA_17 PF13207.1 121 0.001 12.8 0.2 1 1 5.2e-05 0.0053 10.5 0.0 3 49 208 259 206 363 0.73 # 20996 # 23890 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.552 1_21 - 401 Transposase_mut PF00872.13 381 1.9e-109 358.5 0.0 1 1 2.4e-111 2.4e-109 358.2 0.0 8 379 9 373 4 375 0.97 # 18508 # 19710 # 1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.511 1_49 - 95 HTH_Tnp_ISL3 PF13542.1 52 2.6e-06 19.5 0.0 1 1 1.1e-07 3.8e-06 19.0 0.0 11 50 5 45 5 47 0.95 # 42830 # 43114 # -1 # ID=1_49;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.523 2_7 - 132 HTH_Tnp_ISL3 PF13542.1 52 0.00045 12.3 0.9 1 1 3.6e-05 0.0012 11.0 0.0 8 42 19 54 18 56 0.81 # 4653 # 5048 # -1 # ID=2_7;partial=00;start_type=ATG;rbs_motif=4Base/6BMM;rbs_spacer=13-15bp;gc_cont=0.520 4_2 - 89 HTH_Tnp_ISL3 PF13542.1 52 0.00046 12.3 0.2 1 1 6.1e-05 0.0021 10.2 0.1 9 43 3 37 2 37 0.79 # 862 # 1128 # -1 # ID=4_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.483 1_23 - 965 AAA_33 PF13671.1 143 0.00042 13.1 0.0 1 1 2.6e-05 0.0026 10.6 0.0 3 24 208 229 207 274 0.91 # 20996 # 23890 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.552 2_7 - 132 CENP-B_N PF04218.8 53 9.1e-08 24.4 0.1 1 1 5e-09 1.7e-07 23.6 0.1 4 45 20 62 18 65 0.86 # 4653 # 5048 # -1 # ID=2_7;partial=00;start_type=ATG;rbs_motif=4Base/6BMM;rbs_spacer=13-15bp;gc_cont=0.520 4_2 - 89 CENP-B_N PF04218.8 53 1.6e-05 17.3 0.3 1 1 1.4e-06 4.8e-05 15.7 0.0 13 43 12 42 4 44 0.92 # 862 # 1128 # -1 # ID=4_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.483 1_49 - 95 CENP-B_N PF04218.8 53 8.9e-05 14.8 0.2 1 2 4.1e-05 0.0014 11.0 0.0 8 44 7 44 5 47 0.81 # 42830 # 43114 # -1 # ID=1_49;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.523 1_49 - 95 CENP-B_N PF04218.8 53 8.9e-05 14.8 0.2 2 2 0.047 1.6 1.2 0.1 37 51 53 67 51 74 0.82 # 42830 # 43114 # -1 # ID=1_49;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.523 1_43 - 321 PaaX PF07848.7 70 0.00094 12.1 0.0 1 1 2.2e-05 0.0022 11.0 0.0 38 68 51 82 16 84 0.74 # 38784 # 39746 # -1 # ID=1_43;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.671 1_23 - 965 T4SS-DNA_transf PF02534.9 469 7.8e-12 37.3 0.0 1 1 1.9e-12 1.9e-10 32.8 0.0 132 395 283 529 270 593 0.73 # 20996 # 23890 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.552 1_48 - 270 DDE_Tnp_IS240 PF13610.1 140 9.3e-09 28.3 0.1 1 1 3.7e-10 1.3e-08 27.9 0.1 2 139 112 253 111 254 0.88 # 41979 # 42788 # -1 # ID=1_48;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.580 1_21 - 401 DDE_Tnp_IS240 PF13610.1 140 1.3e-05 18.1 0.0 1 2 0.0057 0.19 4.6 0.0 25 127 186 290 173 296 0.76 # 18508 # 19710 # 1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.511 1_21 - 401 DDE_Tnp_IS240 PF13610.1 140 1.3e-05 18.1 0.0 2 2 5.7e-05 0.0019 11.1 0.1 87 124 322 359 298 364 0.81 # 18508 # 19710 # 1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.511 4_1 - 230 DDE_Tnp_IS240 PF13610.1 140 8.9e-05 15.4 0.0 1 1 3.3e-06 0.00011 15.1 0.0 30 139 94 203 64 204 0.76 # 17 # 706 # -1 # ID=4_1;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.496 2_7 - 132 HTH_26 PF13443.1 63 0.00082 12.5 0.2 1 1 2.6e-05 0.0026 10.9 0.0 10 33 39 62 31 70 0.91 # 4653 # 5048 # -1 # ID=2_7;partial=00;start_type=ATG;rbs_motif=4Base/6BMM;rbs_spacer=13-15bp;gc_cont=0.520 1_49 - 95 HTH_17 PF12728.2 51 9.7e-07 22.0 0.0 1 1 3.6e-08 1.8e-06 21.1 0.0 2 24 23 45 22 78 0.93 # 42830 # 43114 # -1 # ID=1_49;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.523 4_2 - 89 HTH_17 PF12728.2 51 0.00039 13.6 0.1 1 1 2.3e-05 0.0012 12.1 0.0 3 27 23 48 23 60 0.79 # 862 # 1128 # -1 # ID=4_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.483 2_8 - 138 DDE_Tnp_1_5 PF13737.1 112 4e-16 52.1 0.0 1 1 6.2e-18 6.2e-16 51.5 0.0 1 52 82 132 82 135 0.94 # 5448 # 5861 # 1 # ID=2_8;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.522 1_9 - 864 AAA_10 PF12846.2 304 4.4e-45 147.3 0.0 1 1 1.9e-46 9.5e-45 146.2 0.0 1 291 474 760 474 767 0.89 # 4944 # 7535 # 1 # ID=1_9;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.549 1_23 - 965 AAA_10 PF12846.2 304 3.5e-17 55.6 0.6 1 2 5.7e-18 2.9e-16 52.6 0.1 3 299 206 517 205 520 0.81 # 20996 # 23890 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.552 1_23 - 965 AAA_10 PF12846.2 304 3.5e-17 55.6 0.6 2 2 0.078 3.9 -0.4 0.1 28 116 781 927 774 952 0.44 # 20996 # 23890 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.552 1_37 - 323 AAA_13 PF13166.1 712 0.0085 7.4 21.8 1 1 0.00015 0.015 6.6 21.8 287 471 81 282 64 291 0.68 # 31795 # 32763 # 1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.595 3_1 - 399 AAA_31 PF13614.1 157 0.00056 12.8 0.0 1 1 3.1e-05 0.0031 10.4 0.0 108 147 232 270 228 276 0.86 # 3 # 1199 # 1 # ID=3_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.472 2_2 - 314 Yae1_N PF09811.4 39 0.0022 10.5 7.5 1 1 4.3e-05 0.0043 9.6 7.5 8 34 254 280 251 282 0.50 # 423 # 1364 # 1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.541 1_21 - 401 MULE PF10551.4 93 5.1e-12 38.8 0.0 1 1 1.1e-13 1.1e-11 37.7 0.0 15 91 179 256 166 258 0.81 # 18508 # 19710 # 1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.511 2_16 - 2729 KR PF08659.5 181 3.1e-34 111.1 0.0 1 1 1e-35 1e-33 109.4 0.0 3 180 606 791 605 792 0.93 # 20063 # 28249 # 1 # ID=2_16;partial=00;start_type=ATG;rbs_motif=AGxAG;rbs_spacer=5-10bp;gc_cont=0.402 3_3 - 425 DNA_pol_lambd_f PF10391.4 52 0.00031 13.2 0.0 1 1 1e-05 0.001 11.5 0.0 5 29 183 207 179 218 0.85 # 2255 # 3529 # -1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.540 3_15 - 185 SSB PF00436.20 104 4.8e-43 138.3 0.5 1 1 5.7e-45 5.8e-43 138.0 0.5 1 100 6 109 6 113 0.95 # 9961 # 10515 # 1 # ID=3_15;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.595 2_2 - 314 Glyco_trans_4_3 PF12000.3 171 2.5e-06 20.2 0.0 1 2 0.00013 0.013 8.0 0.0 14 84 112 182 97 188 0.77 # 423 # 1364 # 1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.541 2_2 - 314 Glyco_trans_4_3 PF12000.3 171 2.5e-06 20.2 0.0 2 2 3.4e-05 0.0035 9.9 0.0 19 65 209 256 201 260 0.90 # 423 # 1364 # 1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.541 2_7 - 132 BrkDBD PF09607.5 58 0.00032 13.2 0.2 1 1 7.5e-06 0.00076 12.0 0.2 31 50 45 64 19 67 0.85 # 4653 # 5048 # -1 # ID=2_7;partial=00;start_type=ATG;rbs_motif=4Base/6BMM;rbs_spacer=13-15bp;gc_cont=0.520 2_6 - 236 HTH_21 PF13276.1 60 1e-18 60.1 3.4 1 2 4e-19 1.3e-17 56.5 0.9 19 57 7 49 3 58 0.84 # 3817 # 4524 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.555 2_6 - 236 HTH_21 PF13276.1 60 1e-18 60.1 3.4 2 2 0.013 0.45 3.6 0.1 13 33 209 231 200 234 0.87 # 3817 # 4524 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.555 1_48 - 270 HTH_21 PF13276.1 60 8.6e-12 37.9 1.5 1 1 9.9e-13 3.3e-11 36.0 1.5 3 59 29 84 24 85 0.87 # 41979 # 42788 # -1 # ID=1_48;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.580 4_1 - 230 HTH_21 PF13276.1 60 2.9e-10 33.0 1.5 1 1 1.8e-11 5.9e-10 32.0 1.5 16 59 3 45 1 46 0.89 # 17 # 706 # -1 # ID=4_1;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.496 1_23 - 965 GTP_EFTU PF00009.22 188 0.00092 11.6 0.0 1 2 0.00069 0.07 5.5 0.0 2 28 203 229 202 251 0.90 # 20996 # 23890 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.552 1_23 - 965 GTP_EFTU PF00009.22 188 0.00092 11.6 0.0 2 2 0.0027 0.27 3.5 0.0 51 85 354 386 333 394 0.89 # 20996 # 23890 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.552 # # Program: hmmsearch # Version: 3.1b1 (May 2013) # Pipeline mode: SEARCH # Query file: /tmp/61a4e46c-5604-43a2-8eb6-a7243be7d057 # Target file: checkm_output/bins/pm324/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm324/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/61a4e46c-5604-43a2-8eb6-a7243be7d057 checkm_output/bins/pm324/genes.faa # Current dir: /mnt/data/azomer/reads-for-assembly/files/output/allcontigs/output_1512029421078392887 # Date: Thu Nov 30 10:02:57 2017 # [ok]