# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_9 - 864 ABC_tran PF00005.22 137 0.00081 12.5 0.0 1 1 2.1e-05 0.002 11.3 0.0 13 96 476 599 472 614 0.60 # 4944 # 7535 # 1 # ID=1_9;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.549 1_50 - 95 HTH_22 PF13309.1 64 2.2e-06 20.2 0.1 1 1 8.2e-08 7.8e-06 18.5 0.0 21 64 6 44 1 44 0.85 # 41517 # 41801 # -1 # ID=1_50;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.523 1_25 - 106 NAD_binding_11 PF14833.1 122 0.00074 12.4 0.0 1 1 1.1e-05 0.001 12.0 0.0 54 100 28 74 22 80 0.86 # 24115 # 24432 # 1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.541 3_30 - 425 Cdd1 PF11731.3 93 0.00032 13.5 0.0 1 1 8.1e-06 0.00077 12.3 0.0 10 47 178 215 141 227 0.85 # 20176 # 21450 # 1 # ID=3_30;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.540 3_8 - 278 N6_Mtase PF02384.11 311 1.8e-10 33.1 0.0 1 1 3e-12 2.8e-10 32.5 0.0 25 117 139 237 130 253 0.84 # 5321 # 6154 # -1 # ID=3_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.520 4_1 - 230 rve_3 PF13683.1 67 5.2e-30 95.7 0.4 1 1 1.7e-31 5.2e-30 95.7 0.4 1 67 145 211 145 211 0.98 # 17 # 706 # -1 # ID=4_1;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.494 2_5 - 271 rve_3 PF13683.1 67 4.3e-18 57.5 0.0 1 1 3.4e-19 1.1e-17 56.3 0.0 2 67 194 259 193 259 0.97 # 3813 # 4625 # -1 # ID=2_5;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.558 1_49 - 270 rve_3 PF13683.1 67 2e-17 55.4 0.1 1 1 1.3e-18 4e-17 54.4 0.1 3 67 196 261 194 261 0.97 # 40666 # 41475 # -1 # ID=1_49;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.580 3_2 - 150 HTH_40 PF14493.1 91 1.5e-05 18.0 0.0 1 1 4e-07 3.8e-05 16.7 0.0 3 47 23 68 21 98 0.81 # 142 # 591 # -1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.344 3_5 - 401 HTH_38 PF13936.1 44 0.00091 11.7 0.4 1 1 6.2e-05 0.0059 9.1 0.5 5 30 95 120 89 135 0.80 # 2291 # 3493 # 1 # ID=3_5;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.510 4_2 - 89 DUF1492 PF07374.6 100 0.00035 13.5 0.0 1 1 8.4e-06 0.00079 12.4 0.0 73 93 23 43 5 46 0.85 # 862 # 1128 # -1 # ID=4_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.483 1_22 - 965 MobB PF03205.9 140 0.0011 11.6 0.0 1 1 2.7e-05 0.0025 10.3 0.0 5 33 209 237 206 243 0.86 # 19693 # 22587 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.552 1_37 - 149 DUF3584 PF12128.3 1201 0.0047 7.0 17.5 1 1 5.8e-05 0.0055 6.8 17.5 622 746 7 130 1 144 0.51 # 30854 # 31300 # 1 # ID=1_37;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.604 1_50 - 95 TetR_N PF00440.18 47 2.2e-05 16.9 0.1 1 1 7e-07 6.6e-05 15.4 0.0 4 35 13 41 12 42 0.93 # 41517 # 41801 # -1 # ID=1_50;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.523 3_32 - 394 CbiA PF01656.18 195 2.4e-18 59.1 0.0 1 1 4.6e-20 4.4e-18 58.2 0.0 1 141 103 283 103 320 0.75 # 22506 # 23687 # -1 # ID=3_32;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.472 3_26 - 146 MethyltransfD12 PF02086.10 260 0.00093 11.5 0.0 1 1 1.4e-05 0.0013 11.0 0.0 20 46 83 109 68 117 0.79 # 17866 # 18303 # -1 # ID=3_26;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.612 3_5 - 401 Sigma70_r4_2 PF08281.7 54 0.00043 12.6 0.1 1 1 3.6e-05 0.0011 11.3 0.1 13 36 98 120 97 134 0.85 # 2291 # 3493 # 1 # ID=3_5;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.510 3_31 - 325 Sigma70_r4_2 PF08281.7 54 0.00052 12.4 0.0 1 1 4.8e-05 0.0015 10.8 0.0 24 50 158 184 153 185 0.89 # 21532 # 22506 # -1 # ID=3_31;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.447 4_2 - 89 Sigma70_r4_2 PF08281.7 54 0.00055 12.3 0.0 1 1 3.4e-05 0.0011 11.3 0.0 17 49 12 44 3 44 0.89 # 862 # 1128 # -1 # ID=4_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.483 1_49 - 270 rve PF00665.21 120 7.2e-31 99.7 0.0 1 1 3.4e-32 1.1e-30 99.1 0.0 4 119 109 222 106 223 0.97 # 40666 # 41475 # -1 # ID=1_49;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.580 2_5 - 271 rve PF00665.21 120 3.7e-24 78.0 0.0 1 1 1.8e-25 5.6e-24 77.4 0.0 4 119 102 221 99 222 0.96 # 3813 # 4625 # -1 # ID=2_5;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.558 4_1 - 230 rve PF00665.21 120 5.3e-23 74.3 0.0 1 1 3.1e-24 9.7e-23 73.4 0.0 3 120 60 174 58 174 0.94 # 17 # 706 # -1 # ID=4_1;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.494 4_2 - 89 Terminase_5 PF06056.7 58 1.6e-05 17.3 0.1 1 1 4.8e-07 2.3e-05 16.8 0.1 15 48 23 56 20 66 0.87 # 862 # 1128 # -1 # ID=4_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.483 1_50 - 95 Terminase_5 PF06056.7 58 5.4e-05 15.6 0.0 1 1 2e-06 9.6e-05 14.8 0.0 12 37 21 46 12 56 0.88 # 41517 # 41801 # -1 # ID=1_50;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.523 3_26 - 146 Methyltransf_26 PF13659.1 117 5.9e-07 22.4 0.1 1 1 1.8e-08 8.5e-07 21.9 0.1 4 44 87 126 84 141 0.83 # 17866 # 18303 # -1 # ID=3_26;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.612 3_8 - 278 Methyltransf_26 PF13659.1 117 0.00027 13.8 0.0 1 2 0.048 2.3 1.2 0.0 9 48 28 82 24 149 0.75 # 5321 # 6154 # -1 # ID=3_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.520 3_8 - 278 Methyltransf_26 PF13659.1 117 0.00027 13.8 0.0 2 2 6.2e-05 0.003 10.5 0.0 3 63 171 238 170 267 0.81 # 5321 # 6154 # -1 # ID=3_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.520 3_31 - 325 CPSase_L_D3 PF02787.14 123 0.00018 14.1 0.5 1 1 1.2e-05 0.00057 12.5 0.1 49 98 134 186 125 191 0.83 # 21532 # 22506 # -1 # ID=3_31;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.447 2_6 - 132 CPSase_L_D3 PF02787.14 123 0.00084 12.0 0.1 1 2 0.00046 0.022 7.4 0.0 8 37 24 53 17 65 0.75 # 4649 # 5044 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=4Base/6BMM;rbs_spacer=13-15bp;gc_cont=0.520 2_6 - 132 CPSase_L_D3 PF02787.14 123 0.00084 12.0 0.1 2 2 0.014 0.67 2.6 0.0 44 80 88 122 81 128 0.79 # 4649 # 5044 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=4Base/6BMM;rbs_spacer=13-15bp;gc_cont=0.520 4_2 - 89 HTH_Tnp_1 PF01527.15 76 3.3e-22 71.2 0.0 1 1 1.4e-23 4.5e-22 70.7 0.0 1 75 1 71 1 72 0.96 # 862 # 1128 # -1 # ID=4_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.483 2_6 - 132 HTH_Tnp_1 PF01527.15 76 5.3e-22 70.5 0.2 1 1 2.9e-23 9.3e-22 69.7 0.2 2 74 18 97 17 99 0.91 # 4649 # 5044 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=4Base/6BMM;rbs_spacer=13-15bp;gc_cont=0.520 1_50 - 95 HTH_Tnp_1 PF01527.15 76 2.7e-18 58.6 0.2 1 1 1.1e-19 3.3e-18 58.3 0.2 4 76 3 74 1 74 0.94 # 41517 # 41801 # -1 # ID=1_50;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.523 3_2 - 150 GerE PF00196.14 58 7.5e-07 21.3 0.0 1 1 1.3e-08 1.2e-06 20.6 0.0 2 55 17 70 16 73 0.96 # 142 # 591 # -1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.344 1_22 - 965 TraG-D_C PF12696.2 128 2.4e-19 62.3 0.0 1 1 4.8e-21 4.6e-19 61.4 0.0 1 126 439 560 439 562 0.83 # 19693 # 22587 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.552 3_32 - 394 MipZ PF09140.6 261 5.7e-06 18.4 0.0 1 2 0.0026 0.25 3.2 0.0 3 50 103 155 101 185 0.73 # 22506 # 23687 # -1 # ID=3_32;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.472 3_32 - 394 MipZ PF09140.6 261 5.7e-06 18.4 0.0 2 2 2.7e-06 0.00026 12.9 0.0 87 136 225 274 212 297 0.87 # 22506 # 23687 # -1 # ID=3_32;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.472 3_26 - 146 UPF0020 PF01170.13 180 0.00079 11.9 0.0 1 1 1.1e-05 0.001 11.4 0.0 27 68 82 112 78 138 0.70 # 17866 # 18303 # -1 # ID=3_26;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.612 1_39 - 191 DDE_Tnp_1 PF01609.16 213 5.5e-08 25.4 0.0 1 1 1.2e-09 5.6e-08 25.4 0.0 40 111 39 113 18 188 0.80 # 31792 # 32364 # -1 # ID=1_39;partial=00;start_type=TTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.466 1_38 - 81 DDE_Tnp_1 PF01609.16 213 0.0001 14.7 0.1 1 1 2.6e-06 0.00012 14.4 0.1 169 190 3 25 1 34 0.87 # 31511 # 31753 # -1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.551 1_50 - 95 Sigma70_r4 PF04545.11 50 0.00028 13.1 1.0 1 2 2.8e-05 0.0026 9.9 0.1 13 34 15 36 11 37 0.83 # 41517 # 41801 # -1 # ID=1_50;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.523 1_50 - 95 Sigma70_r4 PF04545.11 50 0.00028 13.1 1.0 2 2 0.039 3.7 -0.1 0.1 7 10 76 79 56 88 0.62 # 41517 # 41801 # -1 # ID=1_50;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.523 1_7 - 75 zf-dskA_traR PF01258.12 36 5.4e-10 31.8 7.6 1 1 8.4e-12 8e-10 31.2 7.6 2 35 33 66 31 67 0.92 # 3984 # 4208 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.502 3_31 - 325 HTH_37 PF13744.1 80 0.00012 14.7 1.3 1 2 0.0091 0.86 2.4 0.1 27 55 9 37 6 43 0.82 # 21532 # 22506 # -1 # ID=3_31;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.447 3_31 - 325 HTH_37 PF13744.1 80 0.00012 14.7 1.3 2 2 3.5e-05 0.0033 10.1 0.1 27 53 156 182 135 186 0.92 # 21532 # 22506 # -1 # ID=3_31;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.447 3_26 - 146 N6_N4_Mtase PF01555.13 231 1.1e-25 83.3 0.0 1 2 0.00035 0.033 6.4 0.0 72 114 6 44 1 59 0.79 # 17866 # 18303 # -1 # ID=3_26;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.612 3_26 - 146 N6_N4_Mtase PF01555.13 231 1.1e-25 83.3 0.0 2 2 3.6e-25 3.4e-23 75.1 0.0 169 228 61 120 52 123 0.92 # 17866 # 18303 # -1 # ID=3_26;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.612 1_49 - 270 rve_2 PF13333.1 52 9.8e-17 53.7 0.1 1 1 3.3e-18 1.6e-16 53.1 0.1 1 50 213 267 213 268 0.93 # 40666 # 41475 # -1 # ID=1_49;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.580 4_1 - 230 rve_2 PF13333.1 52 5.1e-06 19.4 2.1 1 1 1.1e-07 5.1e-06 19.4 2.1 1 51 164 218 164 218 0.93 # 17 # 706 # -1 # ID=4_1;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.494 1_50 - 95 MerR_1 PF13411.1 69 4.2e-05 16.2 0.1 1 1 1.5e-06 7.2e-05 15.4 0.1 1 23 23 45 23 84 0.86 # 41517 # 41801 # -1 # ID=1_50;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.523 2_6 - 132 MerR_1 PF13411.1 69 0.00026 13.6 0.2 1 1 1.8e-05 0.00085 12.0 0.0 1 24 40 63 40 69 0.95 # 4649 # 5044 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=4Base/6BMM;rbs_spacer=13-15bp;gc_cont=0.520 1_22 - 965 cobW PF02492.14 178 0.00082 11.7 0.0 1 1 1.7e-05 0.0016 10.7 0.0 5 38 209 241 206 292 0.68 # 19693 # 22587 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.552 1_22 - 965 AAA_16 PF13191.1 185 5.8e-06 19.2 1.4 1 2 4.2e-06 0.0002 14.2 0.0 22 56 202 236 198 264 0.88 # 19693 # 22587 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.552 1_22 - 965 AAA_16 PF13191.1 185 5.8e-06 19.2 1.4 2 2 0.045 2.1 1.1 1.6 88 138 860 917 768 946 0.65 # 19693 # 22587 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.552 1_9 - 864 AAA_16 PF13191.1 185 0.00014 14.7 0.0 1 1 1.4e-05 0.00064 12.6 0.0 26 56 476 507 461 595 0.86 # 4944 # 7535 # 1 # ID=1_9;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.549 1_22 - 965 AAA_22 PF13401.1 131 0.0002 14.4 0.0 1 2 2.1e-05 0.002 11.1 0.0 8 31 208 231 202 344 0.80 # 19693 # 22587 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.552 1_22 - 965 AAA_22 PF13401.1 131 0.0002 14.4 0.0 2 2 0.076 7.2 -0.4 0.0 88 100 780 796 697 818 0.59 # 19693 # 22587 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.552 4_2 - 89 LZ_Tnp_IS481 PF13011.1 85 1e-06 21.9 0.0 1 1 2.7e-08 1.3e-06 21.6 0.0 6 49 3 45 1 68 0.87 # 862 # 1128 # -1 # ID=4_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.483 1_50 - 95 LZ_Tnp_IS481 PF13011.1 85 1.8e-05 17.9 0.1 1 1 8.2e-07 3.9e-05 16.8 0.0 17 49 14 46 2 65 0.88 # 41517 # 41801 # -1 # ID=1_50;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.523 1_40 - 474 Orn_Arg_deC_N PF02784.11 251 4.5e-15 48.3 0.0 1 1 6.7e-17 6.3e-15 47.8 0.0 89 249 6 163 2 165 0.86 # 33607 # 35028 # 1 # ID=1_40;partial=00;start_type=TTG;rbs_motif=4Base/6BMM;rbs_spacer=13-15bp;gc_cont=0.473 1_50 - 95 HTH_Tnp_IS630 PF01710.11 120 1.4e-06 20.8 0.1 1 1 1.7e-08 1.6e-06 20.7 0.1 13 82 17 90 6 94 0.73 # 41517 # 41801 # -1 # ID=1_50;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.523 1_37 - 149 Mnd1 PF03962.10 188 0.0099 8.4 17.0 1 2 8.2e-05 0.0078 8.7 8.8 77 151 3 78 1 83 0.87 # 30854 # 31300 # 1 # ID=1_37;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.604 1_37 - 149 Mnd1 PF03962.10 188 0.0099 8.4 17.0 2 2 0.00036 0.034 6.6 8.2 77 150 63 138 61 146 0.84 # 30854 # 31300 # 1 # ID=1_37;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.604 2_9 - 4435 adh_short PF00106.20 167 1.4e-24 79.7 0.0 1 1 3.6e-26 3.4e-24 78.5 0.0 2 166 2311 2483 2310 2484 0.90 # 14931 # 28235 # 1 # ID=2_9;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.404 1_50 - 95 HTH_3 PF01381.17 55 6.8e-06 18.8 0.1 1 2 4.3e-07 4.1e-05 16.3 0.0 4 36 15 48 13 52 0.86 # 41517 # 41801 # -1 # ID=1_50;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.523 1_50 - 95 HTH_3 PF01381.17 55 6.8e-06 18.8 0.1 2 2 0.046 4.3 0.2 0.0 39 51 80 92 69 94 0.73 # 41517 # 41801 # -1 # ID=1_50;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.523 2_6 - 132 HTH_23 PF13384.1 50 1.7e-10 33.2 0.2 1 1 2.3e-11 5.5e-10 31.6 0.0 3 47 24 69 22 72 0.90 # 4649 # 5044 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=4Base/6BMM;rbs_spacer=13-15bp;gc_cont=0.520 4_2 - 89 HTH_23 PF13384.1 50 1.9e-10 33.0 0.0 1 1 1.4e-11 3.3e-10 32.2 0.0 9 48 13 50 7 52 0.89 # 862 # 1128 # -1 # ID=4_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.483 1_50 - 95 HTH_23 PF13384.1 50 4.1e-09 28.8 0.7 1 1 8e-10 1.9e-08 26.7 0.0 10 40 14 45 9 52 0.87 # 41517 # 41801 # -1 # ID=1_50;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.523 3_16 - 678 HTH_23 PF13384.1 50 0.00057 12.4 0.0 1 1 8.1e-05 0.0019 10.7 0.0 13 46 154 184 145 188 0.84 # 10792 # 12825 # -1 # ID=3_16;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.553 4_2 - 89 HTH_7 PF02796.10 45 3.6e-05 16.5 0.3 1 1 1.4e-06 6.7e-05 15.6 0.0 2 39 2 39 2 43 0.90 # 862 # 1128 # -1 # ID=4_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.483 1_50 - 95 HTH_7 PF02796.10 45 9.4e-05 15.1 0.1 1 1 8.6e-06 0.00041 13.1 0.0 13 43 14 44 8 46 0.89 # 41517 # 41801 # -1 # ID=1_50;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.523 1_50 - 95 HTH_19 PF12844.2 64 8.5e-06 18.7 0.1 1 2 1.4e-06 0.00013 14.8 0.0 9 38 19 49 16 62 0.80 # 41517 # 41801 # -1 # ID=1_50;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.523 1_50 - 95 HTH_19 PF12844.2 64 8.5e-06 18.7 0.1 2 2 0.014 1.3 2.0 0.1 20 36 64 79 59 90 0.67 # 41517 # 41801 # -1 # ID=1_50;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.523 2_6 - 132 HTH_29 PF13551.1 112 4.6e-07 22.9 0.3 1 1 1.9e-08 8.9e-07 21.9 0.0 8 69 36 96 28 114 0.72 # 4649 # 5044 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=4Base/6BMM;rbs_spacer=13-15bp;gc_cont=0.520 4_2 - 89 HTH_29 PF13551.1 112 2.3e-06 20.6 0.1 1 1 5.7e-08 2.7e-06 20.4 0.1 3 37 13 46 12 86 0.83 # 862 # 1128 # -1 # ID=4_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.483 3_12 - 383 OrfB_Zn_ribbon PF07282.6 69 9e-27 85.5 0.7 1 1 2.4e-28 2.3e-26 84.2 0.7 1 67 284 351 284 353 0.98 # 7943 # 9091 # -1 # ID=3_12;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.511 1_22 - 965 Arch_ATPase PF01637.13 234 6.3e-05 15.6 0.0 1 1 1.7e-06 0.00016 14.2 0.0 27 75 211 253 203 329 0.84 # 19693 # 22587 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.552 1_22 - 965 TrwB_AAD_bind PF10412.4 386 3.3e-150 492.7 0.0 1 1 9.6e-152 4.5e-150 492.3 0.0 2 386 191 581 190 581 0.99 # 19693 # 22587 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.552 1_9 - 864 TrwB_AAD_bind PF10412.4 386 3.5e-05 15.3 0.0 1 1 1.5e-06 7e-05 14.4 0.0 16 71 475 536 470 545 0.79 # 4944 # 7535 # 1 # ID=1_9;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.549 3_30 - 425 IMS_HHH PF11798.3 32 3.4e-08 26.1 0.1 1 1 7.8e-10 7.5e-08 25.0 0.1 5 32 174 201 169 201 0.89 # 20176 # 21450 # 1 # ID=3_30;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.540 1_9 - 864 DUF87 PF01935.12 229 2.4e-05 17.1 0.0 1 1 1.8e-06 8.5e-05 15.3 0.0 26 213 477 655 474 670 0.64 # 4944 # 7535 # 1 # ID=1_9;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.549 1_22 - 965 DUF87 PF01935.12 229 0.00024 13.8 0.1 1 1 2.5e-05 0.0012 11.5 0.0 11 57 195 237 180 253 0.82 # 19693 # 22587 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.552 4_2 - 89 HTH_28 PF13518.1 52 4.9e-10 32.2 0.1 1 1 2.1e-11 6.7e-10 31.7 0.1 3 37 12 46 10 65 0.91 # 862 # 1128 # -1 # ID=4_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.483 2_6 - 132 HTH_28 PF13518.1 52 2.4e-08 26.7 0.0 1 1 7.7e-10 2.4e-08 26.7 0.0 1 41 27 68 27 73 0.91 # 4649 # 5044 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=4Base/6BMM;rbs_spacer=13-15bp;gc_cont=0.520 1_50 - 95 HTH_28 PF13518.1 52 9.9e-08 24.8 0.1 1 1 6.3e-09 2e-07 23.8 0.1 1 35 10 45 10 47 0.90 # 41517 # 41801 # -1 # ID=1_50;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.523 3_31 - 325 HTH_24 PF13412.1 48 2.2e-05 16.7 0.1 1 1 1.3e-06 0.00012 14.3 0.0 13 39 157 182 153 184 0.84 # 21532 # 22506 # -1 # ID=3_31;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.447 1_50 - 95 HTH_30 PF13556.1 59 0.00021 13.7 0.5 1 2 8.9e-06 0.00085 11.8 0.1 5 37 15 47 12 73 0.86 # 41517 # 41801 # -1 # ID=1_50;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.523 1_50 - 95 HTH_30 PF13556.1 59 0.00021 13.7 0.5 2 2 0.028 2.6 0.6 0.2 29 38 68 77 68 88 0.81 # 41517 # 41801 # -1 # ID=1_50;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.523 3_12 - 383 TIGR00344 TIGR00344 847 1.2e-05 16.2 0.5 1 1 1.8e-07 1.7e-05 15.7 0.5 680 777 161 255 155 269 0.79 # 7943 # 9091 # -1 # ID=3_12;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.511 1_50 - 95 HTH_10 PF04967.7 53 4.1e-05 16.0 0.1 1 2 2.9e-06 0.00028 13.4 0.0 21 47 20 46 19 48 0.92 # 41517 # 41801 # -1 # ID=1_50;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.523 1_50 - 95 HTH_10 PF04967.7 53 4.1e-05 16.0 0.1 2 2 0.044 4.2 -0.0 0.1 3 14 76 87 70 89 0.82 # 41517 # 41801 # -1 # ID=1_50;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.523 1_50 - 95 HTH_31 PF13560.1 64 7e-05 15.9 0.1 1 1 1.6e-06 0.00015 14.8 0.1 12 53 20 61 11 68 0.88 # 41517 # 41801 # -1 # ID=1_50;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.523 3_12 - 383 HTH_OrfB_IS605 PF12323.3 46 1.9e-09 29.6 0.5 1 1 4.9e-11 4.7e-09 28.4 0.5 19 46 1 28 1 28 0.94 # 7943 # 9091 # -1 # ID=3_12;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.511 1_22 - 965 AAA_17 PF13207.1 121 0.00097 12.8 0.2 1 1 5.2e-05 0.005 10.5 0.0 3 49 208 259 206 363 0.73 # 19693 # 22587 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.552 3_5 - 401 Transposase_mut PF00872.13 381 1.8e-109 358.5 0.0 1 1 2.4e-111 2.3e-109 358.2 0.0 8 379 9 373 4 375 0.97 # 2291 # 3493 # 1 # ID=3_5;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.510 1_50 - 95 HTH_Tnp_ISL3 PF13542.1 52 2.4e-06 19.5 0.0 1 1 1.1e-07 3.6e-06 19.0 0.0 11 50 5 45 5 47 0.95 # 41517 # 41801 # -1 # ID=1_50;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.523 2_6 - 132 HTH_Tnp_ISL3 PF13542.1 52 0.00043 12.3 0.9 1 1 3.6e-05 0.0011 11.0 0.0 8 42 19 54 18 56 0.81 # 4649 # 5044 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=4Base/6BMM;rbs_spacer=13-15bp;gc_cont=0.520 4_2 - 89 HTH_Tnp_ISL3 PF13542.1 52 0.00043 12.3 0.2 1 1 6.1e-05 0.0019 10.2 0.1 9 43 3 37 2 37 0.79 # 862 # 1128 # -1 # ID=4_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.483 1_22 - 965 AAA_33 PF13671.1 143 0.0004 13.1 0.0 1 1 2.6e-05 0.0024 10.6 0.0 3 24 208 229 207 274 0.91 # 19693 # 22587 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.552 2_6 - 132 CENP-B_N PF04218.8 53 8.6e-08 24.4 0.1 1 1 5e-09 1.6e-07 23.6 0.1 4 45 20 62 18 65 0.86 # 4649 # 5044 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=4Base/6BMM;rbs_spacer=13-15bp;gc_cont=0.520 4_2 - 89 CENP-B_N PF04218.8 53 1.5e-05 17.3 0.3 1 1 1.4e-06 4.5e-05 15.7 0.0 13 43 12 42 4 44 0.92 # 862 # 1128 # -1 # ID=4_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.483 1_50 - 95 CENP-B_N PF04218.8 53 8.4e-05 14.8 0.2 1 2 4.1e-05 0.0013 11.0 0.0 8 44 7 44 5 47 0.81 # 41517 # 41801 # -1 # ID=1_50;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.523 1_50 - 95 CENP-B_N PF04218.8 53 8.4e-05 14.8 0.2 2 2 0.047 1.5 1.2 0.1 37 51 53 67 51 74 0.82 # 41517 # 41801 # -1 # ID=1_50;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.523 1_44 - 321 PaaX PF07848.7 70 0.00089 12.1 0.0 1 1 2.2e-05 0.0021 11.0 0.0 38 68 51 82 16 84 0.74 # 37471 # 38433 # -1 # ID=1_44;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.671 1_22 - 965 T4SS-DNA_transf PF02534.9 469 7.3e-12 37.3 0.0 1 1 1.9e-12 1.8e-10 32.8 0.0 132 395 283 529 270 593 0.73 # 19693 # 22587 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.552 1_37 - 149 AAA_9 PF12781.2 228 0.00089 11.0 2.8 1 1 3.4e-06 0.00033 12.4 0.4 157 205 82 130 66 139 0.91 # 30854 # 31300 # 1 # ID=1_37;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.604 1_49 - 270 DDE_Tnp_IS240 PF13610.1 140 8.7e-09 28.3 0.1 1 1 3.7e-10 1.2e-08 27.9 0.1 2 139 112 253 111 254 0.88 # 40666 # 41475 # -1 # ID=1_49;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.580 3_5 - 401 DDE_Tnp_IS240 PF13610.1 140 1.3e-05 18.1 0.0 1 2 0.0057 0.18 4.6 0.0 25 127 186 290 173 296 0.76 # 2291 # 3493 # 1 # ID=3_5;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.510 3_5 - 401 DDE_Tnp_IS240 PF13610.1 140 1.3e-05 18.1 0.0 2 2 5.7e-05 0.0018 11.1 0.1 87 124 322 359 298 364 0.81 # 2291 # 3493 # 1 # ID=3_5;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.510 4_1 - 230 DDE_Tnp_IS240 PF13610.1 140 0.00018 14.3 0.0 1 1 7.5e-06 0.00024 13.9 0.0 71 139 135 203 76 204 0.78 # 17 # 706 # -1 # ID=4_1;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.494 2_6 - 132 HTH_26 PF13443.1 63 0.00077 12.5 0.2 1 1 2.6e-05 0.0025 10.9 0.0 10 33 39 62 31 70 0.91 # 4649 # 5044 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=4Base/6BMM;rbs_spacer=13-15bp;gc_cont=0.520 1_50 - 95 HTH_17 PF12728.2 51 9.1e-07 22.0 0.0 1 1 3.6e-08 1.7e-06 21.1 0.0 2 24 23 45 22 78 0.93 # 41517 # 41801 # -1 # ID=1_50;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.523 4_2 - 89 HTH_17 PF12728.2 51 0.00037 13.6 0.1 1 1 2.3e-05 0.0011 12.1 0.0 3 27 23 48 23 60 0.79 # 862 # 1128 # -1 # ID=4_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.483 2_7 - 138 DDE_Tnp_1_5 PF13737.1 112 3.8e-16 52.1 0.0 1 1 6.2e-18 5.9e-16 51.5 0.0 1 52 82 132 82 135 0.94 # 5444 # 5857 # 1 # ID=2_7;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.522 1_9 - 864 AAA_10 PF12846.2 304 4.1e-45 147.3 0.0 1 1 1.9e-46 9e-45 146.2 0.0 1 291 474 760 474 767 0.89 # 4944 # 7535 # 1 # ID=1_9;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.549 1_22 - 965 AAA_10 PF12846.2 304 3.3e-17 55.6 0.6 1 2 5.7e-18 2.7e-16 52.6 0.1 3 299 206 517 205 520 0.81 # 19693 # 22587 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.552 1_22 - 965 AAA_10 PF12846.2 304 3.3e-17 55.6 0.6 2 2 0.078 3.7 -0.4 0.1 28 116 781 927 774 952 0.44 # 19693 # 22587 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.552 1_37 - 149 AAA_13 PF13166.1 712 0.0015 9.8 8.2 1 1 1.9e-05 0.0018 9.6 8.2 92 185 40 132 2 146 0.59 # 30854 # 31300 # 1 # ID=1_37;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.604 3_32 - 394 AAA_31 PF13614.1 157 0.00052 12.8 0.0 1 1 3e-05 0.0029 10.4 0.0 108 147 227 265 223 271 0.86 # 22506 # 23687 # -1 # ID=3_32;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.472 2_1 - 314 Yae1_N PF09811.4 39 0.0021 10.5 7.5 1 1 4.3e-05 0.0041 9.6 7.5 8 34 254 280 251 282 0.50 # 419 # 1360 # 1 # ID=2_1;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.541 3_5 - 401 MULE PF10551.4 93 4.8e-12 38.8 0.0 1 1 1.1e-13 1e-11 37.7 0.0 15 91 179 256 166 258 0.81 # 2291 # 3493 # 1 # ID=3_5;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.510 2_9 - 4435 KR PF08659.5 181 4.3e-34 110.5 0.0 1 1 1.8e-35 1.7e-33 108.6 0.0 3 180 2312 2497 2311 2498 0.93 # 14931 # 28235 # 1 # ID=2_9;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.404 3_30 - 425 DNA_pol_lambd_f PF10391.4 52 0.0003 13.2 0.0 1 1 1e-05 0.00098 11.5 0.0 5 29 183 207 179 218 0.85 # 20176 # 21450 # 1 # ID=3_30;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.540 3_18 - 185 SSB PF00436.20 104 4.5e-43 138.3 0.5 1 1 5.7e-45 5.4e-43 138.0 0.5 1 100 6 109 6 113 0.95 # 13190 # 13744 # -1 # ID=3_18;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.596 2_1 - 314 Glyco_trans_4_3 PF12000.3 171 2.3e-06 20.2 0.0 1 2 0.00013 0.012 8.0 0.0 14 84 112 182 97 188 0.77 # 419 # 1360 # 1 # ID=2_1;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.541 2_1 - 314 Glyco_trans_4_3 PF12000.3 171 2.3e-06 20.2 0.0 2 2 3.4e-05 0.0033 9.9 0.0 19 65 209 256 201 260 0.90 # 419 # 1360 # 1 # ID=2_1;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.541 2_6 - 132 BrkDBD PF09607.5 58 0.00031 13.2 0.2 1 1 7.5e-06 0.00072 12.0 0.2 31 50 45 64 19 67 0.85 # 4649 # 5044 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=4Base/6BMM;rbs_spacer=13-15bp;gc_cont=0.520 2_5 - 271 HTH_21 PF13276.1 60 2e-19 62.2 2.0 1 2 1.2e-19 3.7e-18 58.2 0.3 16 57 40 84 23 93 0.77 # 3813 # 4625 # -1 # ID=2_5;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.558 2_5 - 271 HTH_21 PF13276.1 60 2e-19 62.2 2.0 2 2 0.017 0.52 3.3 0.1 13 33 244 266 236 269 0.87 # 3813 # 4625 # -1 # ID=2_5;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.558 1_49 - 270 HTH_21 PF13276.1 60 8.1e-12 37.9 1.5 1 1 9.9e-13 3.1e-11 36.0 1.5 3 59 29 84 24 85 0.87 # 40666 # 41475 # -1 # ID=1_49;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.580 4_1 - 230 HTH_21 PF13276.1 60 2.8e-10 33.0 1.5 1 1 1.8e-11 5.5e-10 32.0 1.5 16 59 3 45 1 46 0.89 # 17 # 706 # -1 # ID=4_1;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.494 1_22 - 965 GTP_EFTU PF00009.22 188 0.00087 11.6 0.0 1 2 0.00069 0.065 5.5 0.0 2 28 203 229 202 251 0.90 # 19693 # 22587 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.552 1_22 - 965 GTP_EFTU PF00009.22 188 0.00087 11.6 0.0 2 2 0.0027 0.26 3.5 0.0 51 85 354 386 333 394 0.89 # 19693 # 22587 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.552 # # Program: hmmsearch # Version: 3.1b1 (May 2013) # Pipeline mode: SEARCH # Query file: /tmp/f93031b1-b003-41ee-8ba5-394a99a17430 # Target file: checkm_output/bins/pm323/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm323/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/f93031b1-b003-41ee-8ba5-394a99a17430 checkm_output/bins/pm323/genes.faa # Current dir: /mnt/data/azomer/reads-for-assembly/files/output/allcontigs/output_1512029421078392887 # Date: Thu Nov 30 10:02:57 2017 # [ok]