# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_32 - 189 Hexokinase_1 PF00349.16 206 0.00031 13.2 0.0 1 1 3.9e-06 0.00046 12.7 0.0 126 160 43 77 26 110 0.81 # 29945 # 30511 # -1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.490 1_54 - 227 Cons_hypoth95 PF03602.10 183 0.0001 14.9 0.0 1 2 0.00051 0.059 5.8 0.0 113 128 19 34 11 81 0.67 # 43679 # 44359 # -1 # ID=1_54;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.589 1_54 - 227 Cons_hypoth95 PF03602.10 183 0.0001 14.9 0.0 2 2 0.00021 0.024 7.1 0.0 41 61 162 182 144 213 0.83 # 43679 # 44359 # -1 # ID=1_54;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.589 1_71 - 323 KaiC PF06745.8 227 0.00023 13.4 0.1 1 1 4.3e-06 0.0005 12.3 0.1 12 43 33 63 27 149 0.80 # 58722 # 59690 # 1 # ID=1_71;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.540 1_69 - 187 HTH_IclR PF09339.5 52 1.7e-05 17.5 0.0 1 1 8e-07 4.6e-05 16.1 0.0 18 40 158 180 145 181 0.93 # 56524 # 57084 # 1 # ID=1_69;partial=00;start_type=ATG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.565 1_72 - 346 HTH_IclR PF09339.5 52 0.00012 14.8 2.7 1 2 0.00024 0.014 8.2 0.0 16 37 38 59 27 68 0.84 # 59879 # 60916 # -1 # ID=1_72;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.520 1_72 - 346 HTH_IclR PF09339.5 52 0.00012 14.8 2.7 2 2 0.0023 0.13 5.1 0.5 30 40 127 137 125 138 0.90 # 59879 # 60916 # -1 # ID=1_72;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.520 1_104 - 71 HrcA_DNA-bdg PF03444.10 79 0.00062 12.3 0.1 1 1 6e-06 0.00069 12.2 0.1 8 61 8 62 1 65 0.74 # 85722 # 85934 # 1 # ID=1_104;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.502 1_71 - 323 ABC_tran PF00005.22 137 8.2e-06 19.3 0.1 1 1 1.4e-07 1.6e-05 18.4 0.1 2 90 31 120 30 159 0.75 # 58722 # 59690 # 1 # ID=1_71;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.540 1_69 - 187 HTH_22 PF13309.1 64 1.6e-05 17.7 0.1 1 3 0.062 7.2 -0.3 0.0 27 38 76 87 61 87 0.80 # 56524 # 57084 # 1 # ID=1_69;partial=00;start_type=ATG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.565 1_69 - 187 HTH_22 PF13309.1 64 1.6e-05 17.7 0.1 2 3 0.096 11 -0.9 0.0 20 42 119 141 110 143 0.84 # 56524 # 57084 # 1 # ID=1_69;partial=00;start_type=ATG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.565 1_69 - 187 HTH_22 PF13309.1 64 1.6e-05 17.7 0.1 3 3 2.3e-06 0.00026 13.9 0.0 45 63 161 179 158 180 0.87 # 56524 # 57084 # 1 # ID=1_69;partial=00;start_type=ATG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.565 1_54 - 227 TIGR00095 TIGR00095 194 0.0011 11.4 0.0 1 2 0.0018 0.21 4.0 0.0 124 137 20 33 13 77 0.83 # 43679 # 44359 # -1 # ID=1_54;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.589 1_54 - 227 TIGR00095 TIGR00095 194 0.0011 11.4 0.0 2 2 0.00063 0.073 5.5 0.0 52 72 163 183 152 216 0.78 # 43679 # 44359 # -1 # ID=1_54;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.589 1_28 - 79 DUF463 PF04317.7 443 5.2e-05 15.0 0.0 1 1 5e-07 5.8e-05 14.8 0.0 3 30 47 74 45 78 0.89 # 26988 # 27224 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.384 1_58 - 425 Cdd1 PF11731.3 93 0.00041 13.4 0.0 1 1 8.1e-06 0.00094 12.3 0.0 10 47 178 215 141 227 0.85 # 46493 # 47767 # 1 # ID=1_58;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.541 1_70 - 555 rve_3 PF13683.1 67 0.00031 13.4 1.5 1 1 9.6e-06 0.0011 11.6 1.5 12 58 282 331 278 339 0.84 # 57068 # 58732 # 1 # ID=1_70;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.556 1_22 - 883 FtsK_SpoIIIE PF01580.13 205 3.3e-05 16.5 0.1 1 2 4.2e-06 0.00024 13.7 0.0 39 63 476 504 464 507 0.84 # 22616 # 25264 # -1 # ID=1_22;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.569 1_22 - 883 FtsK_SpoIIIE PF01580.13 205 3.3e-05 16.5 0.1 2 2 0.07 4.1 -0.1 0.0 76 166 531 625 529 632 0.78 # 22616 # 25264 # -1 # ID=1_22;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.569 1_28 - 79 FtsK_SpoIIIE PF01580.13 205 0.001 11.6 0.0 1 1 2.1e-05 0.0012 11.4 0.0 26 65 31 71 21 74 0.82 # 26988 # 27224 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.384 1_72 - 346 HTH_38 PF13936.1 44 4.4e-07 22.5 0.8 1 1 5.7e-08 3.3e-06 19.7 0.0 10 41 30 61 26 62 0.89 # 59879 # 60916 # -1 # ID=1_72;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.520 1_69 - 187 HTH_38 PF13936.1 44 0.00015 14.4 0.1 1 1 9.6e-06 0.00056 12.6 0.1 15 41 152 179 148 181 0.88 # 56524 # 57084 # 1 # ID=1_69;partial=00;start_type=ATG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.565 1_71 - 323 MobB PF03205.9 140 0.00037 13.3 0.1 1 1 3.4e-05 0.0013 11.6 0.0 2 31 42 70 41 86 0.78 # 58722 # 59690 # 1 # ID=1_71;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.540 1_28 - 79 MobB PF03205.9 140 0.00055 12.8 0.1 1 1 2e-05 0.00078 12.3 0.1 4 32 48 76 46 78 0.90 # 26988 # 27224 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.384 1_22 - 883 MobB PF03205.9 140 0.00094 12.0 0.1 1 1 8.1e-05 0.0031 10.3 0.0 4 37 483 515 481 523 0.79 # 22616 # 25264 # -1 # ID=1_22;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.569 1_70 - 555 HTH_Tnp_4 PF13613.1 53 0.00038 13.1 0.4 1 1 1.1e-05 0.0013 11.4 0.0 26 44 38 56 35 57 0.90 # 57068 # 58732 # 1 # ID=1_70;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.556 1_69 - 187 HTH_8 PF02954.14 42 0.00026 13.7 0.1 1 1 5.9e-06 0.00068 12.3 0.1 24 42 164 182 161 182 0.89 # 56524 # 57084 # 1 # ID=1_69;partial=00;start_type=ATG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.565 1_69 - 187 TetR_N PF00440.18 47 0.00048 12.9 0.7 1 2 0.027 3.2 0.7 0.0 11 21 3 13 1 13 0.83 # 56524 # 57084 # 1 # ID=1_69;partial=00;start_type=ATG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.565 1_69 - 187 TetR_N PF00440.18 47 0.00048 12.9 0.7 2 2 4.2e-05 0.0049 9.7 0.2 17 35 159 177 156 178 0.86 # 56524 # 57084 # 1 # ID=1_69;partial=00;start_type=ATG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.565 1_3 - 1753 AAA_19 PF13245.1 76 1.4e-07 24.4 0.4 1 1 1.4e-08 5.3e-07 22.5 0.4 7 76 980 1046 973 1046 0.78 # 1398 # 6656 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.615 1_28 - 79 AAA_19 PF13245.1 76 1.4e-05 18.0 0.0 1 1 4.8e-07 1.9e-05 17.5 0.0 14 42 48 75 41 78 0.80 # 26988 # 27224 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.384 1_71 - 323 AAA_19 PF13245.1 76 7.4e-05 15.6 0.2 1 1 9.8e-06 0.00038 13.3 0.1 6 37 36 67 32 119 0.75 # 58722 # 59690 # 1 # ID=1_71;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.540 1_60 - 402 CbiA PF01656.18 195 2.6e-18 59.2 0.0 1 1 4.6e-20 5.4e-18 58.2 0.0 1 141 111 291 111 328 0.75 # 48823 # 50028 # -1 # ID=1_60;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.468 1_71 - 323 PRK PF00485.13 194 0.00039 13.1 0.0 1 1 7e-06 0.00081 12.1 0.0 1 38 42 81 42 132 0.66 # 58722 # 59690 # 1 # ID=1_71;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.540 1_28 - 79 KTI12 PF08433.5 270 0.00061 12.1 0.2 1 1 9.5e-06 0.0011 11.3 0.1 6 30 49 73 47 77 0.86 # 26988 # 27224 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.384 1_54 - 227 MethyltransfD12 PF02086.10 260 0.00064 12.3 0.0 1 2 0.02 2.4 0.6 0.0 177 188 20 31 11 86 0.88 # 43679 # 44359 # -1 # ID=1_54;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.589 1_54 - 227 MethyltransfD12 PF02086.10 260 0.00064 12.3 0.0 2 2 3.9e-05 0.0045 9.5 0.0 15 46 156 189 148 214 0.82 # 43679 # 44359 # -1 # ID=1_54;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.589 1_36 - 229 Sigma70_r4_2 PF08281.7 54 0.00012 14.6 0.0 1 1 3.3e-06 0.00019 14.0 0.0 10 47 151 187 149 194 0.80 # 31584 # 32270 # -1 # ID=1_36;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.349 1_59 - 325 Sigma70_r4_2 PF08281.7 54 0.00062 12.4 0.0 1 1 3.2e-05 0.0019 10.8 0.0 24 50 158 184 153 185 0.89 # 47849 # 48823 # -1 # ID=1_59;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.448 1_94 - 330 Rep_3 PF01051.16 222 2.7e-32 105.2 0.2 1 1 3.4e-34 4e-32 104.7 0.2 3 214 14 269 13 275 0.91 # 76213 # 77202 # 1 # ID=1_94;partial=00;start_type=TTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.521 1_70 - 555 rve PF00665.21 120 1.7e-12 40.7 0.0 1 1 7.7e-14 4.5e-12 39.3 0.0 2 118 157 298 156 300 0.89 # 57068 # 58732 # 1 # ID=1_70;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.556 1_72 - 346 rve PF00665.21 120 1.9e-10 34.0 0.0 1 1 8.1e-12 4.7e-10 32.8 0.0 18 118 206 305 190 307 0.91 # 59879 # 60916 # -1 # ID=1_72;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.520 1_72 - 346 Terminase_5 PF06056.7 58 0.00018 14.2 0.0 1 1 6.1e-06 0.00071 12.3 0.0 3 35 30 62 28 85 0.86 # 59879 # 60916 # -1 # ID=1_72;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.520 1_54 - 227 Methyltransf_26 PF13659.1 117 1.3e-10 34.5 0.0 1 2 1.4e-07 1.6e-05 18.0 0.0 60 114 10 71 3 74 0.69 # 43679 # 44359 # -1 # ID=1_54;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.589 1_54 - 227 Methyltransf_26 PF13659.1 117 1.3e-10 34.5 0.0 2 2 1.8e-06 0.00021 14.4 0.0 4 34 167 196 164 221 0.80 # 43679 # 44359 # -1 # ID=1_54;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.589 1_28 - 79 Zeta_toxin PF06414.7 201 0.00085 11.5 0.0 1 1 8.3e-06 0.00096 11.4 0.0 21 41 49 69 31 75 0.83 # 26988 # 27224 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.384 1_3 - 1753 AAA_30 PF13604.1 196 2.7e-44 144.2 14.8 1 3 0.057 2.2 0.9 0.0 41 86 223 269 218 282 0.84 # 1398 # 6656 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.615 1_3 - 1753 AAA_30 PF13604.1 196 2.7e-44 144.2 14.8 2 3 0.00037 0.014 8.0 2.2 8 147 420 551 418 564 0.80 # 1398 # 6656 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.615 1_3 - 1753 AAA_30 PF13604.1 196 2.7e-44 144.2 14.8 3 3 2.9e-44 1.1e-42 138.9 1.1 1 191 967 1160 967 1163 0.93 # 1398 # 6656 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.615 1_71 - 323 AAA_30 PF13604.1 196 0.00019 14.2 0.3 1 1 1.5e-05 0.00056 12.6 0.3 15 128 38 164 27 170 0.55 # 58722 # 59690 # 1 # ID=1_71;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.540 1_28 - 79 AAA_30 PF13604.1 196 0.0013 11.4 0.0 1 1 4.3e-05 0.0016 11.1 0.0 22 45 48 72 38 76 0.74 # 26988 # 27224 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.384 1_93 - 163 DUF106 PF01956.11 168 0.0059 9.2 3.7 1 2 0.005 0.58 2.8 0.1 15 54 10 47 2 65 0.66 # 74451 # 74939 # 1 # ID=1_93;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.446 1_93 - 163 DUF106 PF01956.11 168 0.0059 9.2 3.7 2 2 0.00025 0.029 7.0 1.5 43 80 64 101 50 108 0.88 # 74451 # 74939 # 1 # ID=1_93;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.446 1_59 - 325 CPSase_L_D3 PF02787.14 123 0.00023 14.1 0.5 1 1 6e-06 0.0007 12.5 0.1 49 98 134 186 125 191 0.83 # 47849 # 48823 # -1 # ID=1_59;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.448 1_105 - 117 GerE PF00196.14 58 6.1e-13 41.1 0.0 1 1 7.9e-15 9.1e-13 40.5 0.0 4 54 32 82 30 85 0.96 # 85919 # 86269 # 1 # ID=1_105;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.590 1_6 - 721 TraG-D_C PF12696.2 128 9.6e-21 67.1 0.0 1 2 0.095 11 -1.0 0.0 12 60 196 243 192 247 0.85 # 7372 # 9534 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.539 1_6 - 721 TraG-D_C PF12696.2 128 9.6e-21 67.1 0.0 2 2 4.2e-22 4.9e-20 64.8 0.0 1 127 419 541 419 542 0.87 # 7372 # 9534 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.539 1_72 - 346 DDE_3 PF13358.1 146 2.2e-29 95.2 0.1 1 1 4.1e-31 4.8e-29 94.1 0.0 2 138 177 310 176 317 0.96 # 59879 # 60916 # -1 # ID=1_72;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.520 1_60 - 402 MipZ PF09140.6 261 6.6e-06 18.4 0.0 1 2 0.0025 0.29 3.2 0.0 3 50 111 163 109 201 0.73 # 48823 # 50028 # -1 # ID=1_60;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.468 1_60 - 402 MipZ PF09140.6 261 6.6e-06 18.4 0.0 2 2 2.8e-06 0.00032 12.9 0.0 87 136 233 282 220 305 0.87 # 48823 # 50028 # -1 # ID=1_60;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.468 1_54 - 227 UPF0020 PF01170.13 180 0.00066 12.4 0.0 1 2 0.00016 0.019 7.6 0.0 103 119 17 33 6 85 0.76 # 43679 # 44359 # -1 # ID=1_54;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.589 1_54 - 227 UPF0020 PF01170.13 180 0.00066 12.4 0.0 2 2 0.0053 0.62 2.7 0.0 29 53 164 187 159 217 0.69 # 43679 # 44359 # -1 # ID=1_54;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.589 1_30 - 474 DivIC PF04977.10 80 0.0029 10.3 6.6 1 2 1.7e-05 0.0019 10.8 3.5 17 66 75 123 71 124 0.91 # 27797 # 29218 # -1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.580 1_30 - 474 DivIC PF04977.10 80 0.0029 10.3 6.6 2 2 0.055 6.4 -0.5 0.1 49 64 406 421 401 426 0.81 # 27797 # 29218 # -1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.580 1_26 - 74 zf-dskA_traR PF01258.12 36 3e-15 48.9 2.2 1 1 3.5e-17 4.1e-15 48.4 2.2 5 35 36 66 29 72 0.86 # 26120 # 26341 # -1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.491 1_66 - 372 DUF2316 PF10078.4 89 0.018 8.2 9.4 1 2 0.00018 0.021 8.0 2.7 5 45 198 238 193 249 0.88 # 53060 # 54175 # -1 # ID=1_66;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.583 1_66 - 372 DUF2316 PF10078.4 89 0.018 8.2 9.4 2 2 0.008 0.92 2.7 0.6 5 42 251 288 246 300 0.86 # 53060 # 54175 # -1 # ID=1_66;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.583 1_71 - 323 AAA PF00004.24 132 1.8e-06 21.3 0.0 1 1 3.5e-08 4.1e-06 20.2 0.0 3 97 45 152 43 181 0.68 # 58722 # 59690 # 1 # ID=1_71;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.540 1_59 - 325 HTH_37 PF13744.1 80 0.00015 14.7 1.3 1 2 0.0091 1.1 2.4 0.1 27 55 9 37 6 43 0.82 # 47849 # 48823 # -1 # ID=1_59;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.448 1_59 - 325 HTH_37 PF13744.1 80 0.00015 14.7 1.3 2 2 3.5e-05 0.004 10.1 0.1 27 53 156 182 135 186 0.92 # 47849 # 48823 # -1 # ID=1_59;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.448 1_71 - 323 TIGR00064 TIGR00064 279 8.3e-05 14.7 0.2 1 1 1.4e-06 0.00016 13.7 0.0 72 111 33 72 4 76 0.73 # 58722 # 59690 # 1 # ID=1_71;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.540 1_54 - 227 N6_N4_Mtase PF01555.13 231 1e-34 113.1 0.0 1 1 4.4e-34 5.1e-32 104.3 0.0 1 227 21 199 21 203 0.91 # 43679 # 44359 # -1 # ID=1_54;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.589 1_28 - 79 cobW PF02492.14 178 2.8e-05 16.7 0.1 1 1 3e-07 3.5e-05 16.4 0.1 4 25 48 73 45 78 0.78 # 26988 # 27224 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.384 1_71 - 323 AAA_16 PF13191.1 185 4.2e-11 36.3 1.2 1 1 1.4e-11 5.3e-10 32.7 0.3 22 179 38 153 24 162 0.76 # 58722 # 59690 # 1 # ID=1_71;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.540 1_28 - 79 AAA_16 PF13191.1 185 1.8e-05 17.9 0.0 1 1 5.2e-07 2e-05 17.8 0.0 26 51 46 71 32 78 0.85 # 26988 # 27224 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.384 1_6 - 721 AAA_16 PF13191.1 185 0.00019 14.6 0.0 1 1 1.9e-05 0.00073 12.6 0.0 21 55 182 216 179 247 0.85 # 7372 # 9534 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.539 1_71 - 323 AAA_22 PF13401.1 131 5.8e-16 52.0 0.3 1 1 2.2e-17 1.3e-15 50.8 0.3 3 129 39 170 36 172 0.77 # 58722 # 59690 # 1 # ID=1_71;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.540 1_28 - 79 AAA_22 PF13401.1 131 9.3e-05 15.7 0.0 1 1 3.7e-06 0.00022 14.5 0.0 4 31 44 71 36 76 0.85 # 26988 # 27224 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.384 1_110 - 253 HTH_AraC PF00165.18 42 5.4e-17 54.3 0.6 1 2 4.6e-08 5.3e-06 19.3 0.0 4 39 154 188 151 191 0.87 # 89113 # 89871 # 1 # ID=1_110;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.464 1_110 - 253 HTH_AraC PF00165.18 42 5.4e-17 54.3 0.6 2 2 2.2e-12 2.5e-10 33.1 0.3 11 38 209 237 207 238 0.95 # 89113 # 89871 # 1 # ID=1_110;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.464 1_28 - 79 AAA_29 PF13555.1 62 0.00078 12.1 0.0 1 1 8.5e-06 0.00099 11.8 0.0 14 40 34 61 31 75 0.86 # 26988 # 27224 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.384 1_74 - 298 HTH_1 PF00126.22 60 4.5e-16 51.5 0.0 1 1 1.2e-17 1.3e-15 50.0 0.0 2 60 7 65 6 65 0.96 # 61525 # 62418 # 1 # ID=1_74;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.408 1_72 - 346 LZ_Tnp_IS481 PF13011.1 85 5.5e-06 19.8 0.2 1 1 1.1e-07 1.3e-05 18.6 0.2 12 69 27 82 15 89 0.91 # 59879 # 60916 # -1 # ID=1_72;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.520 1_26 - 74 Tnp_zf-ribbon_2 PF13842.1 32 0.00036 14.1 0.8 1 1 5.1e-06 0.00059 13.4 0.8 15 32 33 61 21 61 0.82 # 26120 # 26341 # -1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.491 1_72 - 346 HTH_32 PF13565.1 77 1.9e-12 41.0 3.6 1 2 0.0027 0.15 6.0 0.1 32 77 24 61 9 61 0.80 # 59879 # 60916 # -1 # ID=1_72;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.520 1_72 - 346 HTH_32 PF13565.1 77 1.9e-12 41.0 3.6 2 2 9.8e-14 5.7e-12 39.5 0.3 1 77 56 136 56 136 0.82 # 59879 # 60916 # -1 # ID=1_72;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.520 1_70 - 555 HTH_32 PF13565.1 77 0.00013 15.9 8.9 1 3 0.0033 0.19 5.7 0.1 33 77 11 52 2 52 0.67 # 57068 # 58732 # 1 # ID=1_70;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.556 1_70 - 555 HTH_32 PF13565.1 77 0.00013 15.9 8.9 2 3 0.0011 0.065 7.2 0.1 21 63 61 113 54 120 0.69 # 57068 # 58732 # 1 # ID=1_70;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.556 1_70 - 555 HTH_32 PF13565.1 77 0.00013 15.9 8.9 3 3 0.0055 0.32 5.0 0.1 1 18 131 148 131 160 0.79 # 57068 # 58732 # 1 # ID=1_70;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.556 1_72 - 346 HTH_23 PF13384.1 50 2.1e-11 36.3 2.8 1 1 2e-12 4.6e-11 35.2 0.0 3 50 26 73 24 73 0.94 # 59879 # 60916 # -1 # ID=1_72;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.520 1_44 - 666 HTH_23 PF13384.1 50 1.3e-05 17.9 0.0 1 1 1.9e-06 4.4e-05 16.2 0.0 13 45 152 181 149 186 0.88 # 36575 # 38572 # -1 # ID=1_44;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.585 1_69 - 187 HTH_23 PF13384.1 50 1.8e-05 17.4 0.0 1 1 2e-06 4.7e-05 16.1 0.0 17 42 158 183 148 186 0.82 # 56524 # 57084 # 1 # ID=1_69;partial=00;start_type=ATG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.565 1_105 - 117 HTH_23 PF13384.1 50 0.00094 12.0 0.1 1 1 9.9e-05 0.0023 10.8 0.1 8 35 37 64 36 67 0.95 # 85919 # 86269 # 1 # ID=1_105;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.590 1_70 - 555 HTH_23 PF13384.1 50 0.0041 10.0 0.1 1 2 0.00018 0.0041 10.0 0.1 20 39 34 53 29 57 0.88 # 57068 # 58732 # 1 # ID=1_70;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.556 1_70 - 555 HTH_23 PF13384.1 50 0.0041 10.0 0.1 2 2 0.0029 0.066 6.1 0.5 32 42 130 140 128 147 0.84 # 57068 # 58732 # 1 # ID=1_70;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.556 1_69 - 187 HTH_7 PF02796.10 45 9.5e-09 28.2 0.2 1 1 5.4e-10 2.1e-08 27.1 0.2 1 42 140 179 140 181 0.93 # 56524 # 57084 # 1 # ID=1_69;partial=00;start_type=ATG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.565 1_70 - 555 HTH_7 PF02796.10 45 3.1e-05 17.0 0.2 1 1 3e-06 0.00012 15.1 0.2 23 43 33 53 30 54 0.93 # 57068 # 58732 # 1 # ID=1_70;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.556 1_72 - 346 HTH_7 PF02796.10 45 0.00047 13.2 0.2 1 2 0.00021 0.008 9.2 0.0 15 38 34 57 16 61 0.84 # 59879 # 60916 # -1 # ID=1_72;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.520 1_72 - 346 HTH_7 PF02796.10 45 0.00047 13.2 0.2 2 2 0.066 2.5 1.2 0.1 35 43 129 137 119 139 0.79 # 59879 # 60916 # -1 # ID=1_72;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.520 1_104 - 71 RepL PF05732.6 165 0.00054 12.3 0.0 1 1 5.3e-06 0.00062 12.1 0.0 64 111 13 60 3 63 0.80 # 85722 # 85934 # 1 # ID=1_104;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.502 1_71 - 323 NB-ARC PF00931.17 287 0.00046 12.2 0.3 1 1 5.9e-06 0.00069 11.6 0.3 8 104 29 126 22 144 0.74 # 58722 # 59690 # 1 # ID=1_71;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.540 1_104 - 71 FeoC PF09012.5 69 0.0012 11.7 0.0 1 1 1.2e-05 0.0014 11.5 0.0 7 52 17 62 5 66 0.87 # 85722 # 85934 # 1 # ID=1_104;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.502 1_72 - 346 HTH_29 PF13551.1 112 3.2e-19 62.3 0.2 1 1 2e-20 7.8e-19 61.0 0.2 1 111 30 139 30 140 0.92 # 59879 # 60916 # -1 # ID=1_72;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.520 1_70 - 555 HTH_29 PF13551.1 112 7.9e-06 19.2 0.5 1 2 3.4e-05 0.0013 12.0 0.1 14 91 33 109 25 121 0.65 # 57068 # 58732 # 1 # ID=1_70;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.556 1_70 - 555 HTH_29 PF13551.1 112 7.9e-06 19.2 0.5 2 2 0.011 0.43 3.9 0.0 25 44 128 147 125 155 0.80 # 57068 # 58732 # 1 # ID=1_70;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.556 1_69 - 187 HTH_29 PF13551.1 112 1.7e-05 18.1 1.1 1 2 0.076 2.9 1.2 0.1 33 61 121 148 104 156 0.71 # 56524 # 57084 # 1 # ID=1_69;partial=00;start_type=ATG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.565 1_69 - 187 HTH_29 PF13551.1 112 1.7e-05 18.1 1.1 2 2 5.3e-06 0.0002 14.6 0.0 10 38 157 184 150 185 0.90 # 56524 # 57084 # 1 # ID=1_69;partial=00;start_type=ATG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.565 1_71 - 323 Arch_ATPase PF01637.13 234 4.2e-05 16.4 0.2 1 1 8.6e-07 0.0001 15.2 0.2 8 135 30 142 27 164 0.68 # 58722 # 59690 # 1 # ID=1_71;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.540 1_71 - 323 AAA_5 PF07728.9 139 9.4e-05 15.3 0.1 1 1 7e-06 0.00082 12.2 0.2 5 90 46 149 43 152 0.85 # 58722 # 59690 # 1 # ID=1_71;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.540 1_71 - 323 ResIII PF04851.10 184 1.1e-05 18.4 0.2 1 2 3.4e-05 0.002 11.1 0.3 29 101 44 110 20 121 0.72 # 58722 # 59690 # 1 # ID=1_71;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.540 1_71 - 323 ResIII PF04851.10 184 1.1e-05 18.4 0.2 2 2 0.0012 0.067 6.1 0.0 131 162 109 140 96 153 0.63 # 58722 # 59690 # 1 # ID=1_71;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.540 1_28 - 79 ResIII PF04851.10 184 0.00069 12.6 0.0 1 1 1.3e-05 0.00076 12.4 0.0 22 51 29 70 8 76 0.75 # 26988 # 27224 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.384 1_6 - 721 TrwB_AAD_bind PF10412.4 386 1.8e-145 477.4 0.0 1 1 8e-147 2.3e-145 477.1 0.0 2 386 172 561 171 561 0.99 # 7372 # 9534 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.539 1_22 - 883 TrwB_AAD_bind PF10412.4 386 6.4e-07 21.3 0.2 1 1 9.3e-08 2.7e-06 19.3 0.0 15 53 479 517 470 552 0.81 # 22616 # 25264 # -1 # ID=1_22;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.569 1_71 - 323 TrwB_AAD_bind PF10412.4 386 0.00016 13.4 0.5 1 2 6.6e-05 0.0019 9.9 0.0 14 44 39 69 35 76 0.83 # 58722 # 59690 # 1 # ID=1_71;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.540 1_71 - 323 TrwB_AAD_bind PF10412.4 386 0.00016 13.4 0.5 2 2 0.085 2.5 -0.3 0.0 234 275 115 158 112 169 0.78 # 58722 # 59690 # 1 # ID=1_71;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.540 1_28 - 79 TrwB_AAD_bind PF10412.4 386 0.00018 13.3 0.0 1 1 8.2e-06 0.00024 12.9 0.0 12 44 41 73 31 76 0.85 # 26988 # 27224 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.384 1_28 - 79 AAA_18 PF13238.1 129 0.0001 15.7 0.9 1 2 0.046 2.7 1.5 0.0 52 90 11 44 2 49 0.58 # 26988 # 27224 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.384 1_28 - 79 AAA_18 PF13238.1 129 0.0001 15.7 0.9 2 2 9.8e-06 0.00057 13.3 0.3 3 22 49 68 48 77 0.80 # 26988 # 27224 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.384 1_71 - 323 AAA_18 PF13238.1 129 0.00011 15.7 0.0 1 1 3.3e-06 0.00019 14.8 0.0 1 23 43 90 43 138 0.67 # 58722 # 59690 # 1 # ID=1_71;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.540 1_28 - 79 AAA_32 PF13654.1 509 0.0009 11.0 0.0 1 1 9.2e-06 0.0011 10.8 0.0 27 58 41 72 35 77 0.87 # 26988 # 27224 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.384 1_58 - 425 IMS_HHH PF11798.3 32 3.9e-08 26.2 0.1 1 1 7.8e-10 9.1e-08 25.0 0.1 5 32 174 201 169 201 0.89 # 46493 # 47767 # 1 # ID=1_58;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.541 1_65 - 170 TIGR01406 TIGR01406 231 0.00038 12.9 0.0 1 1 5e-06 0.00058 12.3 0.0 3 59 106 156 105 159 0.81 # 52558 # 53067 # -1 # ID=1_65;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.594 1_22 - 883 DUF87 PF01935.12 229 1.6e-07 24.4 0.0 1 1 1.1e-08 6.4e-07 22.5 0.0 26 221 482 668 468 676 0.75 # 22616 # 25264 # -1 # ID=1_22;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.569 1_71 - 323 DUF87 PF01935.12 229 0.00069 12.6 0.2 1 1 0.0001 0.0061 9.5 0.0 26 52 43 69 40 73 0.85 # 58722 # 59690 # 1 # ID=1_71;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.540 1_72 - 346 HTH_28 PF13518.1 52 1.1e-09 31.3 0.1 1 1 2.1e-10 8.2e-09 28.5 0.0 1 50 29 79 29 82 0.91 # 59879 # 60916 # -1 # ID=1_72;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.520 1_69 - 187 HTH_28 PF13518.1 52 3.9e-06 20.0 0.9 1 1 1.7e-07 6.4e-06 19.3 0.1 7 38 152 184 148 185 0.88 # 56524 # 57084 # 1 # ID=1_69;partial=00;start_type=ATG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.565 1_70 - 555 HTH_28 PF13518.1 52 0.0021 11.2 0.0 1 2 5.4e-05 0.0021 11.2 0.0 15 35 34 54 32 64 0.90 # 57068 # 58732 # 1 # ID=1_70;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.556 1_70 - 555 HTH_28 PF13518.1 52 0.0021 11.2 0.0 2 2 0.037 1.4 2.2 0.4 26 37 129 140 125 145 0.87 # 57068 # 58732 # 1 # ID=1_70;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.556 1_71 - 323 TIGR00041 TIGR00041 196 0.00038 13.0 0.0 1 1 5.7e-06 0.00066 12.2 0.0 2 54 38 96 37 122 0.74 # 58722 # 59690 # 1 # ID=1_71;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.540 1_59 - 325 HTH_24 PF13412.1 48 3.3e-05 16.4 0.5 1 1 2.5e-06 0.00015 14.3 0.0 13 39 157 182 153 184 0.84 # 47849 # 48823 # -1 # ID=1_59;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.448 1_104 - 71 HTH_24 PF13412.1 48 7.1e-05 15.3 0.0 1 1 2.1e-06 0.00012 14.5 0.0 4 47 5 54 3 55 0.90 # 85722 # 85934 # 1 # ID=1_104;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.502 1_110 - 253 HTH_18 PF12833.2 81 3.4e-15 49.1 0.1 1 1 7.8e-17 9.1e-15 47.7 0.0 2 77 165 238 164 240 0.95 # 89113 # 89871 # 1 # ID=1_110;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.464 1_104 - 71 DUF2250 PF10007.4 93 0.0002 14.4 0.0 1 1 1.8e-06 0.00021 14.3 0.0 25 57 27 59 6 63 0.87 # 85722 # 85934 # 1 # ID=1_104;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.502 1_72 - 346 HTH_33 PF13592.1 60 6.8e-10 31.5 0.3 1 1 2.4e-11 2.8e-09 29.6 0.3 3 50 108 155 107 157 0.94 # 59879 # 60916 # -1 # ID=1_72;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.520 1_71 - 323 DUF2075 PF09848.4 352 2.1e-06 20.0 0.1 1 1 5.2e-08 3e-06 19.5 0.1 2 97 41 138 40 165 0.71 # 58722 # 59690 # 1 # ID=1_71;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.540 1_28 - 79 DUF2075 PF09848.4 352 6.7e-06 18.3 0.0 1 1 1.4e-07 8.1e-06 18.1 0.0 4 30 47 73 44 78 0.79 # 26988 # 27224 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.384 1_3 - 1753 UvrD_C_2 PF13538.1 104 6.1e-08 25.9 0.4 1 1 4.9e-09 5.6e-07 22.8 0.2 3 102 1337 1440 1335 1442 0.79 # 1398 # 6656 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.615 1_82 - 117 HTH_OrfB_IS605 PF12323.3 46 9.5e-19 59.7 0.0 1 1 1.3e-20 1.5e-18 59.0 0.0 1 45 1 45 1 46 0.98 # 68179 # 68529 # 1 # ID=1_82;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.467 1_71 - 323 T2SE PF00437.15 272 3.1e-06 19.3 0.7 1 1 1.3e-07 1.5e-05 17.1 0.7 110 161 22 72 6 137 0.81 # 58722 # 59690 # 1 # ID=1_71;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.540 1_71 - 323 NACHT PF05729.7 166 0.00056 12.7 0.2 1 1 1.1e-05 0.0013 11.5 0.2 1 28 41 68 41 140 0.77 # 58722 # 59690 # 1 # ID=1_71;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.540 1_71 - 323 UPF0079 PF02367.12 123 0.00013 14.7 0.0 1 1 2.2e-06 0.00025 13.8 0.0 3 45 28 70 26 114 0.84 # 58722 # 59690 # 1 # ID=1_71;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.540 1_71 - 323 AAA_17 PF13207.1 121 0.00017 15.5 0.1 1 1 3.4e-06 0.00039 14.4 0.0 1 40 42 89 42 186 0.63 # 58722 # 59690 # 1 # ID=1_71;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.540 1_71 - 323 TIGR02211 TIGR02211 221 0.00053 12.3 0.0 1 1 7.3e-06 0.00085 11.7 0.0 11 51 20 60 12 86 0.88 # 58722 # 59690 # 1 # ID=1_71;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.540 1_28 - 79 Viral_helicase1 PF01443.13 234 0.00024 13.7 0.1 1 1 3.4e-06 0.00039 13.1 0.1 3 29 49 73 47 77 0.84 # 26988 # 27224 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.384 1_28 - 79 AAA_15 PF13175.1 415 0.00044 12.4 0.1 1 1 3.8e-06 0.00044 12.4 0.1 16 54 10 76 1 78 0.67 # 26988 # 27224 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.384 1_28 - 79 Pox_A32 PF04665.7 241 0.00018 13.9 0.0 1 1 2.9e-06 0.00034 13.1 0.0 9 40 40 71 35 74 0.88 # 26988 # 27224 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.384 1_71 - 323 AAA_14 PF13173.1 128 4.8e-06 19.6 0.0 1 1 3.5e-07 2e-05 17.6 0.0 2 96 40 164 39 193 0.62 # 58722 # 59690 # 1 # ID=1_71;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.540 1_28 - 79 AAA_14 PF13173.1 128 0.00012 15.1 0.1 1 2 0.059 3.4 0.7 0.0 78 104 17 42 11 49 0.75 # 26988 # 27224 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.384 1_28 - 79 AAA_14 PF13173.1 128 0.00012 15.1 0.1 2 2 1.1e-05 0.00062 12.8 0.0 6 28 48 70 43 76 0.85 # 26988 # 27224 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.384 1_72 - 346 HTH_Tnp_ISL3 PF13542.1 52 0.00028 13.2 0.4 1 1 2.3e-05 0.0013 11.0 0.4 18 49 30 62 26 62 0.79 # 59879 # 60916 # -1 # ID=1_72;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.520 1_70 - 555 HTH_Tnp_ISL3 PF13542.1 52 0.00043 12.6 0.0 1 1 2.7e-05 0.0015 10.8 0.0 30 49 34 53 32 55 0.90 # 57068 # 58732 # 1 # ID=1_70;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.556 1_71 - 323 AAA_33 PF13671.1 143 0.00019 14.5 0.0 1 1 3.7e-06 0.00042 13.3 0.0 1 45 42 100 42 132 0.60 # 58722 # 59690 # 1 # ID=1_71;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.540 1_28 - 79 ArgK PF03308.11 267 7.1e-06 18.0 0.0 1 1 6.2e-08 7.2e-06 18.0 0.0 31 59 46 74 24 77 0.87 # 26988 # 27224 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.384 1_6 - 721 T4SS-DNA_transf PF02534.9 469 5.4e-12 38.0 0.0 1 1 1.9e-13 1.1e-11 37.0 0.0 276 391 394 505 363 542 0.81 # 7372 # 9534 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.539 1_22 - 883 T4SS-DNA_transf PF02534.9 469 0.00022 13.0 0.0 1 2 0.0019 0.11 4.0 0.0 105 185 533 607 470 622 0.85 # 22616 # 25264 # -1 # ID=1_22;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.569 1_22 - 883 T4SS-DNA_transf PF02534.9 469 0.00022 13.0 0.0 2 2 0.00033 0.019 6.6 0.0 321 378 713 769 665 771 0.93 # 22616 # 25264 # -1 # ID=1_22;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.569 1_104 - 71 HTH_15 PF12324.3 77 5.1e-05 16.1 0.0 1 2 4e-06 0.00046 13.0 0.0 31 65 17 51 12 56 0.92 # 85722 # 85934 # 1 # ID=1_104;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.502 1_104 - 71 HTH_15 PF12324.3 77 5.1e-05 16.1 0.0 2 2 0.013 1.5 1.7 0.0 13 28 54 69 51 70 0.87 # 85722 # 85934 # 1 # ID=1_104;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.502 1_28 - 79 RNA_helicase PF00910.17 107 0.00075 12.8 0.1 1 1 1.1e-05 0.0013 12.1 0.1 3 28 49 74 47 78 0.85 # 26988 # 27224 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.384 1_104 - 71 HTH_45 PF14947.1 77 0.0011 12.0 0.0 1 1 1.2e-05 0.0014 11.6 0.0 21 52 25 58 2 63 0.77 # 85722 # 85934 # 1 # ID=1_104;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.502 1_28 - 79 NTPase_1 PF03266.10 168 5.9e-05 15.9 0.1 1 1 7.8e-07 9.1e-05 15.3 0.1 2 27 47 72 46 76 0.87 # 26988 # 27224 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.384 1_66 - 372 TIGR00422 TIGR00422 863 0.015 6.0 17.3 1 1 0.00016 0.019 5.7 16.6 719 856 133 270 77 276 0.83 # 53060 # 54175 # -1 # ID=1_66;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.583 1_1 - 195 Glyco_trans_1_3 PF13528.1 318 0.00013 14.3 0.0 1 1 1.7e-06 0.0002 13.7 0.0 144 213 19 89 3 95 0.71 # 20 # 604 # -1 # ID=1_1;partial=00;start_type=TTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.588 1_72 - 346 HTH_17 PF12728.2 51 0.00015 15.1 0.3 1 2 4.3e-05 0.005 10.3 0.0 2 45 41 90 40 92 0.87 # 59879 # 60916 # -1 # ID=1_72;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.520 1_72 - 346 HTH_17 PF12728.2 51 0.00015 15.1 0.3 2 2 0.034 3.9 1.0 0.0 13 25 127 139 122 147 0.86 # 59879 # 60916 # -1 # ID=1_72;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.520 1_26 - 74 Zn-ribbon_8 PF09723.5 42 6.2e-05 16.1 0.6 1 1 1e-06 0.00012 15.2 0.6 6 39 35 67 34 69 0.78 # 26120 # 26341 # -1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.491 1_95 - 70 BOF PF04076.8 103 3.4e-26 84.2 1.0 1 1 3.2e-28 3.7e-26 84.1 1.0 38 102 2 66 1 67 0.98 # 78074 # 78283 # -1 # ID=1_95;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.448 1_71 - 323 PIF1 PF05970.9 364 3.3e-05 16.0 0.0 1 1 6.3e-07 7.4e-05 14.9 0.0 7 127 27 149 23 167 0.68 # 58722 # 59690 # 1 # ID=1_71;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.540 1_69 - 187 TrmB PF01978.14 68 0.00012 14.9 0.0 1 1 4.1e-06 0.00024 13.9 0.0 21 45 157 181 150 184 0.90 # 56524 # 57084 # 1 # ID=1_69;partial=00;start_type=ATG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.565 1_104 - 71 TrmB PF01978.14 68 0.00016 14.5 0.0 1 1 3.6e-06 0.00021 14.1 0.0 22 56 24 58 22 68 0.91 # 85722 # 85934 # 1 # ID=1_104;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.502 1_65 - 170 RNase_T PF00929.19 164 5.1e-07 23.2 0.0 1 1 6.3e-09 7.3e-07 22.7 0.0 1 55 106 152 106 158 0.89 # 52558 # 53067 # -1 # ID=1_65;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.594 1_22 - 883 AAA_10 PF12846.2 304 1.6e-49 162.1 0.0 1 1 9.2e-51 2.7e-49 161.3 0.0 1 294 479 768 479 774 0.87 # 22616 # 25264 # -1 # ID=1_22;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.569 1_6 - 721 AAA_10 PF12846.2 304 7.1e-07 22.0 0.0 1 1 1.3e-06 3.9e-05 16.3 0.0 4 295 188 493 186 498 0.52 # 7372 # 9534 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.539 1_71 - 323 AAA_10 PF12846.2 304 1.2e-06 21.3 0.1 1 2 1.7e-05 0.00049 12.7 0.0 3 34 42 73 40 106 0.73 # 58722 # 59690 # 1 # ID=1_71;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.540 1_71 - 323 AAA_10 PF12846.2 304 1.2e-06 21.3 0.1 2 2 0.0025 0.074 5.5 0.0 216 245 120 150 79 207 0.83 # 58722 # 59690 # 1 # ID=1_71;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.540 1_28 - 79 AAA_10 PF12846.2 304 0.00018 14.1 0.1 1 2 0.0099 0.29 3.6 0.0 272 286 15 33 2 37 0.74 # 26988 # 27224 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.384 1_28 - 79 AAA_10 PF12846.2 304 0.00018 14.1 0.1 2 2 0.00021 0.0062 9.0 0.0 2 29 45 72 44 76 0.89 # 26988 # 27224 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.384 1_94 - 330 HTH_20 PF12840.2 61 0.00013 14.8 0.0 1 2 0.002 0.11 5.5 0.0 23 46 105 128 101 129 0.90 # 76213 # 77202 # 1 # ID=1_94;partial=00;start_type=TTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.521 1_94 - 330 HTH_20 PF12840.2 61 0.00013 14.8 0.0 2 2 0.00075 0.043 6.8 0.0 19 58 217 263 190 266 0.79 # 76213 # 77202 # 1 # ID=1_94;partial=00;start_type=TTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.521 1_104 - 71 HTH_20 PF12840.2 61 0.0008 12.4 0.0 1 1 1.5e-05 0.00086 12.3 0.0 21 59 21 59 6 61 0.88 # 85722 # 85934 # 1 # ID=1_104;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.502 1_60 - 402 AAA_31 PF13614.1 157 0.00052 13.1 0.1 1 2 0.071 8.2 -0.6 0.0 12 61 120 174 110 209 0.55 # 48823 # 50028 # -1 # ID=1_60;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.468 1_60 - 402 AAA_31 PF13614.1 157 0.00052 13.1 0.1 2 2 3.1e-05 0.0036 10.3 0.0 108 147 235 273 231 279 0.86 # 48823 # 50028 # -1 # ID=1_60;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.468 1_28 - 79 IstB_IS21 PF01695.12 178 0.0003 13.3 0.0 1 1 2.6e-06 0.0003 13.3 0.0 38 69 35 66 9 75 0.76 # 26988 # 27224 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.384 1_104 - 71 FaeA PF04703.7 62 5.2e-28 90.2 0.0 1 1 4.9e-30 5.7e-28 90.1 0.0 1 61 1 70 1 70 0.99 # 85722 # 85934 # 1 # ID=1_104;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.502 1_58 - 425 DNA_pol_lambd_f PF10391.4 52 0.00037 13.2 0.0 1 1 1e-05 0.0012 11.5 0.0 5 29 183 207 179 218 0.85 # 46493 # 47767 # 1 # ID=1_58;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.541 1_3 - 1753 AAA_11 PF13086.1 236 0.00023 13.9 3.5 1 1 6e-06 0.00035 13.3 0.0 2 75 968 1038 967 1058 0.81 # 1398 # 6656 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.615 1_28 - 79 AAA_11 PF13086.1 236 0.00027 13.7 0.0 1 1 4.6e-06 0.00027 13.7 0.0 15 43 43 70 13 78 0.80 # 26988 # 27224 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.384 1_46 - 173 SSB PF00436.20 104 3.2e-43 139.0 0.4 1 1 3.6e-45 4.2e-43 138.6 0.4 1 103 6 112 6 113 0.96 # 38938 # 39456 # -1 # ID=1_46;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.574 1_62 - 314 Glyco_trans_4_3 PF12000.3 171 1.6e-05 17.7 0.1 1 2 0.00077 0.089 5.5 0.0 14 84 112 182 97 188 0.79 # 50443 # 51384 # 1 # ID=1_62;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.538 1_62 - 314 Glyco_trans_4_3 PF12000.3 171 1.6e-05 17.7 0.1 2 2 3.4e-05 0.004 9.9 0.0 19 65 209 256 201 261 0.90 # 50443 # 51384 # 1 # ID=1_62;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.538 # # Program: hmmsearch # Version: 3.1b1 (May 2013) # Pipeline mode: SEARCH # Query file: /tmp/29c3acff-040e-4656-b96a-8b0eae44b3ac # Target file: checkm_output/bins/pm317/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm317/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/29c3acff-040e-4656-b96a-8b0eae44b3ac checkm_output/bins/pm317/genes.faa # Current dir: /mnt/data/azomer/reads-for-assembly/files/output/allcontigs/output_1512029421078392887 # Date: Thu Nov 30 10:02:42 2017 # [ok]