# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_24 - 344 KaiC PF06745.8 227 0.00046 11.1 0.1 1 1 1.7e-05 0.0008 10.3 0.1 8 37 152 181 147 187 0.88 # 15249 # 16280 # 1 # ID=1_24;partial=00;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.411 1_24 - 344 ABC_tran PF00005.22 137 2.5e-05 16.4 0.0 1 1 1.5e-06 6.9e-05 15.0 0.0 7 32 159 184 155 226 0.85 # 15249 # 16280 # 1 # ID=1_24;partial=00;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.411 1_37 - 215 HTH_38 PF13936.1 44 0.0034 8.8 5.9 1 2 0.062 2.8 -0.5 0.0 3 20 81 98 79 99 0.86 # 29998 # 30642 # -1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.490 1_37 - 215 HTH_38 PF13936.1 44 0.0034 8.8 5.9 2 2 1.6e-05 0.00075 10.9 0.2 28 43 191 206 171 207 0.80 # 29998 # 30642 # -1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.490 1_38 - 207 MobB PF03205.9 140 1.2e-06 20.1 0.4 1 1 2.7e-07 6.2e-06 17.8 0.1 10 104 12 88 2 104 0.68 # 30928 # 31548 # 1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.462 1_24 - 344 MobB PF03205.9 140 5.6e-05 14.7 0.0 1 1 4.3e-06 9.8e-05 13.9 0.0 2 42 165 204 164 227 0.86 # 15249 # 16280 # 1 # ID=1_24;partial=00;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.411 1_33 - 844 SecA_DEAD PF07517.9 266 9e-05 13.6 0.0 1 1 4.4e-06 0.0002 12.4 0.0 91 138 54 102 40 113 0.80 # 23555 # 26086 # -1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.332 1_38 - 207 CbiA PF01656.18 195 4.8e-29 92.9 1.6 1 1 2.7e-30 1.2e-28 91.6 1.6 1 142 4 123 4 163 0.77 # 30928 # 31548 # 1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.462 1_46 - 279 Rep_3 PF01051.16 222 8.7e-30 95.7 6.8 1 1 2.2e-31 1e-29 95.5 6.8 1 222 8 259 8 259 0.88 # 34481 # 35317 # -1 # ID=1_46;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.358 1_24 - 344 AAA_23 PF13476.1 202 0.00018 13.6 0.2 1 1 7.3e-06 0.00034 12.8 0.2 21 38 165 182 155 185 0.88 # 15249 # 16280 # 1 # ID=1_24;partial=00;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.411 1_38 - 207 AAA_24 PF13479.1 213 0.00029 12.3 0.6 1 2 1.7e-05 0.00077 10.9 0.1 12 88 11 95 3 99 0.81 # 30928 # 31548 # 1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.462 1_38 - 207 AAA_24 PF13479.1 213 0.00029 12.3 0.6 2 2 0.078 3.6 -1.1 0.0 168 206 118 156 115 164 0.79 # 30928 # 31548 # 1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.462 1_24 - 344 Zeta_toxin PF06414.7 201 9.5e-06 16.6 0.0 1 1 3.3e-07 1.5e-05 16.0 0.0 10 59 156 208 148 232 0.82 # 15249 # 16280 # 1 # ID=1_24;partial=00;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.411 1_38 - 207 AAA_30 PF13604.1 196 0.00016 13.1 0.4 1 1 7.4e-06 0.00034 12.0 0.1 26 106 10 88 2 97 0.75 # 30928 # 31548 # 1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.462 1_25 - 612 TraG-D_C PF12696.2 128 1.2e-27 88.2 0.0 1 1 4.3e-29 2e-27 87.4 0.0 2 127 416 534 415 535 0.87 # 16283 # 18118 # 1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.420 1_38 - 207 MipZ PF09140.6 261 8.3e-15 46.3 0.9 1 2 1.3e-11 6e-10 30.4 0.0 2 47 3 47 2 57 0.88 # 30928 # 31548 # 1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.462 1_38 - 207 MipZ PF09140.6 261 8.3e-15 46.3 0.9 2 2 8.2e-07 3.8e-05 14.6 0.3 96 141 73 118 52 146 0.85 # 30928 # 31548 # 1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.462 1_29 - 718 zf-C4_Topoisom PF01396.14 39 0.0004 11.7 0.9 1 1 1.9e-05 0.00087 10.7 0.9 4 21 635 650 632 661 0.77 # 19718 # 21871 # 1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.455 1_38 - 207 cobW PF02492.14 178 0.00011 13.4 0.2 1 2 1.8e-05 0.00085 10.6 0.0 10 38 12 41 3 47 0.86 # 30928 # 31548 # 1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.462 1_38 - 207 cobW PF02492.14 178 0.00011 13.4 0.2 2 2 0.019 0.89 0.7 0.1 114 146 115 147 71 170 0.78 # 30928 # 31548 # 1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.462 1_24 - 344 AAA_16 PF13191.1 185 0.00053 11.8 0.0 1 1 1.6e-05 0.00074 11.3 0.0 22 54 161 194 148 292 0.77 # 15249 # 16280 # 1 # ID=1_24;partial=00;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.411 1_24 - 344 AAA_22 PF13401.1 131 0.00027 12.9 0.0 1 1 1e-05 0.00048 12.1 0.0 5 30 164 189 160 240 0.68 # 15249 # 16280 # 1 # ID=1_24;partial=00;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.411 1_24 - 344 AAA_29 PF13555.1 62 4.6e-05 14.8 0.0 1 1 2.2e-06 9.9e-05 13.7 0.0 20 43 160 183 141 186 0.79 # 15249 # 16280 # 1 # ID=1_24;partial=00;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.411 1_38 - 207 SRP54 PF00448.17 196 4.9e-05 14.6 0.4 1 1 3.6e-06 0.00017 12.9 0.3 11 54 12 50 2 142 0.73 # 30928 # 31548 # 1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.462 1_37 - 215 HTH_32 PF13565.1 77 0.00089 11.9 3.8 1 1 1.8e-05 0.00082 12.0 2.0 8 51 149 188 139 209 0.72 # 29998 # 30642 # -1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.490 1_37 - 215 HTH_23 PF13384.1 50 5.1e-08 24.3 0.1 1 1 2.6e-09 1.2e-07 23.1 0.1 5 40 171 206 167 213 0.89 # 29998 # 30642 # -1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.490 1_38 - 207 Fer4_NifH PF00142.13 273 7.2e-07 20.4 0.0 1 1 2.8e-08 1.3e-06 19.6 0.0 8 64 10 66 3 89 0.90 # 30928 # 31548 # 1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.462 1_37 - 215 HTH_7 PF02796.10 45 1.2e-08 26.6 0.3 1 2 0.00041 0.019 6.8 0.0 2 26 79 104 79 105 0.86 # 29998 # 30642 # -1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.490 1_37 - 215 HTH_7 PF02796.10 45 1.2e-08 26.6 0.3 2 2 2.1e-07 9.6e-06 17.3 0.0 1 38 165 200 165 200 0.96 # 29998 # 30642 # -1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.490 1_38 - 207 DUF1611 PF07755.6 301 1.7e-06 18.6 0.3 1 1 5.8e-08 2.7e-06 18.0 0.3 124 200 13 90 11 106 0.86 # 30928 # 31548 # 1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.462 1_33 - 844 ResIII PF04851.10 184 3.7e-10 31.7 0.0 1 1 2.8e-11 1.3e-09 29.9 0.0 4 80 35 112 33 192 0.84 # 23555 # 26086 # -1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.332 1_25 - 612 TrwB_AAD_bind PF10412.4 386 2.2e-21 67.6 0.0 1 1 7.6e-23 3.5e-21 67.0 0.0 165 380 331 548 306 552 0.86 # 16283 # 18118 # 1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.420 1_38 - 207 TIGR01968 TIGR01968 261 1.8e-12 38.6 1.6 1 2 1e-09 4.7e-08 24.1 0.0 2 39 2 39 1 47 0.90 # 30928 # 31548 # 1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.462 1_38 - 207 TIGR01968 TIGR01968 261 1.8e-12 38.6 1.6 2 2 1.2e-06 5.6e-05 14.0 0.3 109 179 73 145 56 196 0.76 # 30928 # 31548 # 1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.462 1_24 - 344 DUF258 PF03193.11 161 0.00011 13.2 0.0 1 1 3.9e-06 0.00018 12.5 0.0 31 59 158 187 144 220 0.82 # 15249 # 16280 # 1 # ID=1_24;partial=00;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.411 1_37 - 215 HTH_28 PF13518.1 52 9.6e-06 17.4 0.3 1 1 6.6e-07 3.1e-05 15.8 0.3 4 35 175 206 172 209 0.92 # 29998 # 30642 # -1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.490 1_38 - 207 LpxK PF02606.9 326 2.5e-05 15.1 0.1 1 1 8.4e-07 3.9e-05 14.5 0.1 46 71 11 36 2 38 0.94 # 30928 # 31548 # 1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.462 1_33 - 844 DEAD PF00270.24 169 4.1e-10 31.2 0.0 1 1 6.7e-11 1.6e-09 29.3 0.0 13 133 52 165 36 195 0.76 # 23555 # 26086 # -1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.332 1_24 - 344 DEAD PF00270.24 169 0.00011 13.6 0.0 1 1 7.7e-06 0.00018 12.9 0.0 6 33 154 182 151 246 0.77 # 15249 # 16280 # 1 # ID=1_24;partial=00;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.411 1_24 - 344 T2SE PF00437.15 272 7.3e-53 170.9 0.0 1 1 2e-54 9.2e-53 170.6 0.0 12 266 25 311 16 316 0.88 # 15249 # 16280 # 1 # ID=1_24;partial=00;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.411 1_24 - 344 UPF0079 PF02367.12 123 0.00021 12.8 0.0 1 1 8.6e-06 0.0004 11.9 0.0 8 39 156 187 151 196 0.83 # 15249 # 16280 # 1 # ID=1_24;partial=00;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.411 1_24 - 344 AAA_17 PF13207.1 121 2.1e-05 17.2 0.0 1 1 2e-06 4.6e-05 16.1 0.0 2 43 166 207 165 243 0.80 # 15249 # 16280 # 1 # ID=1_24;partial=00;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.411 1_38 - 207 AAA_17 PF13207.1 121 3.9e-05 16.3 0.0 1 1 2.3e-06 5.3e-05 15.9 0.0 9 80 12 86 11 171 0.71 # 30928 # 31548 # 1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.462 1_24 - 344 AAA_25 PF13481.1 194 0.00013 13.1 0.0 1 1 4.2e-06 0.00019 12.6 0.0 22 51 152 181 138 247 0.87 # 15249 # 16280 # 1 # ID=1_24;partial=00;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.411 1_38 - 207 VirC1 PF07015.6 231 3.4e-15 47.5 0.2 1 1 1.5e-16 6.8e-15 46.5 0.2 1 131 1 123 1 174 0.79 # 30928 # 31548 # 1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.462 1_24 - 344 AAA_33 PF13671.1 143 8.2e-06 17.6 0.0 1 2 0.081 3.7 -0.8 0.0 7 38 96 126 93 156 0.81 # 15249 # 16280 # 1 # ID=1_24;partial=00;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.411 1_24 - 344 AAA_33 PF13671.1 143 8.2e-06 17.6 0.0 2 2 7.5e-07 3.4e-05 15.5 0.0 2 25 166 191 165 258 0.69 # 15249 # 16280 # 1 # ID=1_24;partial=00;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.411 1_38 - 207 ArgK PF03308.11 267 5e-05 13.9 0.0 1 1 2.5e-06 0.00012 12.7 0.0 39 72 12 45 5 53 0.90 # 30928 # 31548 # 1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.462 1_25 - 612 T4SS-DNA_transf PF02534.9 469 3.8e-146 479.1 0.0 1 1 1e-147 4.6e-146 478.8 0.0 2 461 102 571 101 578 0.98 # 16283 # 18118 # 1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.420 1_38 - 207 NTPase_1 PF03266.10 168 0.00017 13.1 0.1 1 1 1.1e-05 0.00052 11.5 0.0 7 58 10 66 5 94 0.80 # 30928 # 31548 # 1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.462 1_38 - 207 ATP_bind_1 PF03029.12 238 2.2e-05 15.9 0.0 1 1 1.7e-06 3.8e-05 15.1 0.0 6 42 12 48 10 74 0.85 # 30928 # 31548 # 1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.462 1_24 - 344 ATP_bind_1 PF03029.12 238 0.00021 12.7 0.0 1 1 1.4e-05 0.00031 12.1 0.0 2 23 169 190 168 206 0.87 # 15249 # 16280 # 1 # ID=1_24;partial=00;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.411 1_29 - 718 Toprim_Crpt PF13342.1 62 4.8e-20 62.9 1.9 1 1 1e-21 4.8e-20 62.9 1.9 1 60 652 711 652 713 0.92 # 19718 # 21871 # 1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.455 1_37 - 215 HTH_17 PF12728.2 51 9.8e-05 14.4 0.1 1 2 0.0096 0.44 2.7 0.0 16 29 89 102 88 112 0.85 # 29998 # 30642 # -1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.490 1_37 - 215 HTH_17 PF12728.2 51 9.8e-05 14.4 0.1 2 2 0.00013 0.0059 8.7 0.0 5 25 187 207 185 210 0.91 # 29998 # 30642 # -1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.490 1_17 - 918 AAA_10 PF12846.2 304 9.1e-36 115.5 0.0 1 1 6.9e-37 1.6e-35 114.8 0.0 3 294 539 825 538 832 0.93 # 7259 # 10012 # 1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.444 1_38 - 207 AAA_10 PF12846.2 304 6e-06 17.6 0.0 1 1 4.7e-07 1.1e-05 16.8 0.0 11 47 12 50 10 69 0.82 # 30928 # 31548 # 1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.462 1_38 - 207 ArsA_ATPase PF02374.10 305 1.3e-08 26.0 0.2 1 1 4.8e-10 2.2e-08 25.2 0.2 5 45 6 46 1 66 0.90 # 30928 # 31548 # 1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.462 1_38 - 207 AAA_31 PF13614.1 157 8e-09 27.4 0.3 1 2 9.4e-09 4.3e-07 21.8 0.0 1 39 2 40 2 57 0.93 # 30928 # 31548 # 1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.462 1_38 - 207 AAA_31 PF13614.1 157 8e-09 27.4 0.3 2 2 0.0047 0.21 3.3 0.0 115 152 74 109 58 114 0.83 # 30928 # 31548 # 1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.462 1_24 - 344 IstB_IS21 PF01695.12 178 0.00031 12.0 0.0 1 1 1.3e-05 0.00061 11.0 0.0 45 66 161 182 141 186 0.92 # 15249 # 16280 # 1 # ID=1_24;partial=00;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.411 1_33 - 844 Helicase_C_2 PF13307.1 167 5.2e-12 37.8 0.0 1 1 2.4e-13 1.1e-11 36.7 0.0 47 147 381 471 355 477 0.77 # 23555 # 26086 # -1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.332 # # Program: hmmsearch # Version: 3.1b1 (May 2013) # Pipeline mode: SEARCH # Query file: /tmp/c54fa8a3-40b0-4a17-b57c-52869a45cd92 # Target file: checkm_output/bins/pm305/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm305/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/c54fa8a3-40b0-4a17-b57c-52869a45cd92 checkm_output/bins/pm305/genes.faa # Current dir: /mnt/data/azomer/reads-for-assembly/files/output/allcontigs/output_1512029421078392887 # Date: Thu Nov 30 10:02:15 2017 # [ok]