# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_34 - 341 KaiC PF06745.8 227 0.00019 12.5 0.0 1 2 0.07 3.6 -1.5 0.0 137 180 23 63 15 80 0.72 # 27997 # 29019 # 1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.437 1_34 - 341 KaiC PF06745.8 227 0.00019 12.5 0.0 2 2 1.3e-05 0.00064 10.8 0.0 16 81 149 210 138 253 0.72 # 27997 # 29019 # 1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.437 1_9 - 186 HTH_IclR PF09339.5 52 6.4e-06 17.7 0.2 1 1 9.2e-07 2.3e-05 15.9 0.0 15 40 155 180 151 181 0.85 # 9786 # 10343 # 1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.530 1_5 - 342 HTH_IclR PF09339.5 52 9.8e-06 17.1 0.1 1 1 1e-06 2.6e-05 15.8 0.1 15 40 14 39 10 40 0.86 # 2686 # 3711 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.637 1_34 - 341 ABC_tran PF00005.22 137 5.5e-05 15.5 0.0 1 1 4.6e-06 0.00012 14.4 0.0 8 49 149 190 146 211 0.82 # 27997 # 29019 # 1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.437 1_4 - 260 ABC_tran PF00005.22 137 0.00027 13.2 0.2 1 1 4.1e-05 0.001 11.3 0.1 8 31 98 121 95 132 0.86 # 1910 # 2689 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.621 1_5 - 342 HTH_22 PF13309.1 64 4.6e-05 15.2 0.0 1 1 3.6e-06 9.3e-05 14.2 0.0 44 64 19 39 16 39 0.94 # 2686 # 3711 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.637 1_9 - 186 HTH_22 PF13309.1 64 0.00012 13.8 1.2 1 1 2.4e-05 0.0006 11.6 0.1 35 63 156 179 143 180 0.76 # 9786 # 10343 # 1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.530 1_5 - 342 rve_3 PF13683.1 67 2.9e-09 28.4 0.0 1 1 1.2e-10 6.2e-09 27.3 0.0 2 66 216 288 215 288 0.93 # 2686 # 3711 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.637 1_5 - 342 HTH_DeoR PF08220.7 57 0.00021 12.8 1.2 1 1 1e-05 0.00053 11.5 0.5 9 34 13 37 4 40 0.82 # 2686 # 3711 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.637 1_9 - 186 HTH_40 PF14493.1 91 0.00033 12.9 0.6 1 1 2.1e-05 0.0011 11.2 0.1 7 32 152 177 147 183 0.89 # 9786 # 10343 # 1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.530 1_5 - 342 HTH_38 PF13936.1 44 2.2e-11 35.2 0.8 1 1 1.8e-12 4.7e-11 34.1 0.8 5 42 2 39 1 40 0.97 # 2686 # 3711 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.637 1_9 - 186 HTH_38 PF13936.1 44 3e-06 18.7 0.0 1 1 1.2e-07 3e-06 18.7 0.0 9 41 147 179 145 182 0.93 # 9786 # 10343 # 1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.530 1_5 - 342 HTH_8 PF02954.14 42 9.5e-06 17.1 0.6 1 1 3.3e-07 1.7e-05 16.3 0.1 12 37 11 36 5 40 0.91 # 2686 # 3711 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.637 1_4 - 260 AAA_19 PF13245.1 76 0.00034 12.3 0.2 1 1 2.6e-05 0.0013 10.5 0.0 11 35 103 126 95 157 0.81 # 1910 # 2689 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.621 1_18 - 216 CbiA PF01656.18 195 2e-05 16.0 2.7 1 1 1.8e-06 4.7e-05 14.8 2.7 3 174 6 156 4 174 0.67 # 15951 # 16598 # -1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.454 1_4 - 260 CbiA PF01656.18 195 0.00049 11.5 0.0 1 1 2.5e-05 0.00064 11.1 0.0 3 42 105 145 104 254 0.75 # 1910 # 2689 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.621 1_5 - 342 Sigma70_r4_2 PF08281.7 54 8.9e-07 20.3 0.6 1 2 8.8e-08 4.5e-06 18.1 0.0 25 48 16 39 5 40 0.92 # 2686 # 3711 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.637 1_5 - 342 Sigma70_r4_2 PF08281.7 54 8.9e-07 20.3 0.6 2 2 0.044 2.2 -0.1 0.1 3 18 95 110 93 110 0.88 # 2686 # 3711 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.637 1_5 - 342 rve PF00665.21 120 2.7e-23 74.4 0.0 1 1 1.9e-24 9.8e-23 72.5 0.0 3 119 118 243 117 244 0.96 # 2686 # 3711 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.637 1_4 - 260 AFG1_ATPase PF03969.11 362 0.00016 12.5 0.0 1 1 5.8e-06 0.0003 11.6 0.0 64 214 103 251 81 258 0.78 # 1910 # 2689 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.621 1_34 - 341 AAA_23 PF13476.1 202 1.4e-06 20.7 0.0 1 2 0.037 1.9 0.7 0.0 70 133 34 92 7 110 0.78 # 27997 # 29019 # 1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.437 1_34 - 341 AAA_23 PF13476.1 202 1.4e-06 20.7 0.0 2 2 2.7e-07 1.4e-05 17.5 0.0 19 39 152 172 142 174 0.91 # 27997 # 29019 # 1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.437 1_18 - 216 AAA_24 PF13479.1 213 0.00024 12.7 0.3 1 1 1.4e-05 0.00035 12.1 0.3 10 76 9 82 1 152 0.90 # 15951 # 16598 # -1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.454 1_4 - 260 AAA_24 PF13479.1 213 0.00067 11.2 0.1 1 1 6.1e-05 0.0016 10.0 0.1 5 23 103 121 99 127 0.85 # 1910 # 2689 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.621 1_34 - 341 Zeta_toxin PF06414.7 201 0.00012 13.2 0.0 1 1 5.7e-06 0.00029 11.9 0.0 14 43 150 179 139 230 0.82 # 27997 # 29019 # 1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.437 1_5 - 342 HTH_Tnp_1 PF01527.15 76 4.1e-05 15.5 0.2 1 2 2.7e-05 0.0014 10.6 0.0 22 46 16 40 8 68 0.81 # 2686 # 3711 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.637 1_5 - 342 HTH_Tnp_1 PF01527.15 76 4.1e-05 15.5 0.2 2 2 0.011 0.57 2.2 0.0 35 58 284 311 275 330 0.73 # 2686 # 3711 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.637 1_5 - 342 GerE PF00196.14 58 0.00017 12.9 0.0 1 1 6.2e-06 0.00031 12.0 0.0 16 40 15 39 4 40 0.87 # 2686 # 3711 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.637 1_4 - 260 Bac_DnaA PF00308.13 219 2.6e-09 28.9 0.0 1 1 7.8e-11 4e-09 28.4 0.0 36 136 103 201 90 209 0.84 # 1910 # 2689 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.621 1_18 - 216 MipZ PF09140.6 261 2.1e-08 25.5 5.5 1 2 0.00031 0.016 6.2 0.6 6 22 7 23 2 39 0.83 # 15951 # 16598 # -1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.454 1_18 - 216 MipZ PF09140.6 261 2.1e-08 25.5 5.5 2 2 5.1e-09 2.6e-07 21.9 0.5 83 150 59 126 33 154 0.83 # 15951 # 16598 # -1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.454 1_1 - 130 DDE_Tnp_1 PF01609.16 213 1.9e-16 52.2 0.0 1 1 4.5e-18 2.3e-16 51.9 0.0 79 213 19 123 8 123 0.83 # 3 # 392 # 1 # ID=1_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.603 1_12 - 80 DivIC PF04977.10 80 2.3e-05 15.8 0.7 1 1 6.2e-07 3.1e-05 15.4 0.7 12 50 32 70 28 76 0.92 # 12091 # 12330 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.492 1_5 - 342 Sigma70_r4 PF04545.11 50 0.00015 13.0 0.6 1 1 7.7e-06 0.0004 11.7 0.6 18 40 15 37 3 40 0.82 # 2686 # 3711 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.637 1_35 - 116 Phage_CI_repr PF07022.8 66 0.00021 13.3 0.1 1 1 8e-06 0.00041 12.4 0.0 3 59 8 64 6 71 0.86 # 29222 # 29569 # -1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.457 1_4 - 260 AAA PF00004.24 132 1.1e-08 27.3 0.0 1 1 4.1e-10 2.1e-08 26.4 0.0 1 70 104 175 104 207 0.82 # 1910 # 2689 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.621 1_31 - 276 KorB PF08535.5 93 0.00013 14.1 0.1 1 1 7.5e-06 0.00038 12.6 0.1 16 75 148 205 132 222 0.76 # 23376 # 24203 # -1 # ID=1_31;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.414 1_34 - 341 Herpes_ori_bp PF02399.10 824 0.00059 9.7 0.0 1 1 1.8e-05 0.00092 9.1 0.0 47 78 150 180 137 184 0.85 # 27997 # 29019 # 1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.437 1_34 - 341 cobW PF02492.14 178 0.00012 13.5 0.0 1 1 6.8e-06 0.00035 12.0 0.0 3 29 155 180 153 197 0.71 # 27997 # 29019 # 1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.437 1_34 - 341 AAA_16 PF13191.1 185 1.2e-06 20.6 0.0 1 1 8.3e-08 2.1e-06 19.8 0.0 20 57 148 185 138 228 0.75 # 27997 # 29019 # 1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.437 1_4 - 260 AAA_16 PF13191.1 185 7.5e-06 18.0 2.4 1 2 2.4e-06 6.1e-05 15.0 0.1 23 51 100 128 86 149 0.80 # 1910 # 2689 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.621 1_4 - 260 AAA_16 PF13191.1 185 7.5e-06 18.0 2.4 2 2 0.071 1.8 0.4 0.0 124 162 143 175 125 192 0.74 # 1910 # 2689 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.621 1_4 - 260 AAA_22 PF13401.1 131 6.4e-07 21.6 0.0 1 2 8.3e-06 0.00021 13.4 0.1 4 28 101 125 98 148 0.75 # 1910 # 2689 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.621 1_4 - 260 AAA_22 PF13401.1 131 6.4e-07 21.6 0.0 2 2 0.0016 0.042 6.0 0.0 77 101 151 178 124 201 0.64 # 1910 # 2689 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.621 1_34 - 341 AAA_22 PF13401.1 131 2.6e-05 16.4 0.0 1 1 2.3e-06 5.9e-05 15.2 0.0 2 67 150 228 148 259 0.68 # 27997 # 29019 # 1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.437 1_4 - 260 TIGR00362 TIGR00362 437 1.2e-10 32.6 0.0 1 1 3.3e-12 1.7e-10 32.1 0.0 140 240 104 202 94 210 0.89 # 1910 # 2689 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.621 1_5 - 342 NUMOD1 PF07453.8 37 1e-05 17.3 0.1 1 1 6.8e-07 3.5e-05 15.6 0.0 17 37 18 38 15 38 0.95 # 2686 # 3711 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.637 1_34 - 341 AAA_29 PF13555.1 62 0.00016 13.1 0.0 1 1 8.8e-06 0.00045 11.7 0.0 21 40 150 169 144 170 0.82 # 27997 # 29019 # 1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.437 1_5 - 342 HTH_Tnp_Tc3_1 PF11427.3 50 7.2e-07 20.8 0.0 1 1 2.8e-08 1.4e-06 19.9 0.0 13 45 10 42 3 46 0.90 # 2686 # 3711 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.637 1_9 - 186 HTH_Tnp_IS630 PF01710.11 120 4.7e-05 15.0 0.0 1 1 3.9e-06 9.9e-05 14.0 0.0 8 44 148 184 145 185 0.90 # 9786 # 10343 # 1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.530 1_5 - 342 HTH_Tnp_IS630 PF01710.11 120 0.0003 12.4 0.0 1 1 3.3e-05 0.00085 11.0 0.0 16 57 15 56 8 76 0.77 # 2686 # 3711 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.637 1_4 - 260 AAA_28 PF13521.1 163 0.00013 13.9 0.0 1 1 5e-06 0.00025 13.0 0.0 1 49 103 156 103 171 0.73 # 1910 # 2689 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.621 1_5 - 342 GntR PF00392.16 64 0.00012 13.5 0.0 1 1 1.2e-05 0.00059 11.3 0.0 26 45 19 38 15 40 0.88 # 2686 # 3711 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.637 1_35 - 116 HTH_3 PF01381.17 55 3.9e-07 21.9 0.0 1 1 2.4e-08 6.2e-07 21.2 0.0 9 55 20 63 13 63 0.89 # 29222 # 29569 # -1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.457 1_5 - 342 HTH_3 PF01381.17 55 6e-05 14.9 0.0 1 1 4.9e-06 0.00012 13.9 0.0 7 32 15 40 9 57 0.83 # 2686 # 3711 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.637 1_5 - 342 HTH_23 PF13384.1 50 1.3e-09 29.5 0.4 1 1 5e-11 1.3e-09 29.5 0.4 13 39 13 39 8 44 0.91 # 2686 # 3711 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.637 1_9 - 186 HTH_23 PF13384.1 50 2.2e-05 16.0 0.3 1 1 8.8e-07 2.2e-05 16.0 0.3 5 39 146 180 142 184 0.87 # 9786 # 10343 # 1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.530 1_9 - 186 HTH_7 PF02796.10 45 9.3e-14 43.1 0.5 1 1 1e-14 2.6e-13 41.6 0.1 1 44 141 181 141 182 0.97 # 9786 # 10343 # 1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.530 1_5 - 342 HTH_7 PF02796.10 45 5.7e-09 27.8 0.1 1 1 4.5e-10 1.2e-08 26.8 0.1 12 44 8 40 2 41 0.89 # 2686 # 3711 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.637 1_35 - 116 HTH_19 PF12844.2 64 6.8e-05 14.9 0.0 1 1 3e-06 0.00015 13.8 0.0 18 61 23 66 22 68 0.94 # 29222 # 29569 # -1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.457 1_5 - 342 HTH_29 PF13551.1 112 1.9e-06 20.0 1.1 1 1 2.4e-07 6.2e-06 18.4 0.0 7 35 13 40 8 72 0.86 # 2686 # 3711 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.637 1_9 - 186 HTH_29 PF13551.1 112 5.5e-05 15.3 0.6 1 2 0.049 1.3 1.3 0.2 24 46 114 136 88 153 0.67 # 9786 # 10343 # 1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.530 1_9 - 186 HTH_29 PF13551.1 112 5.5e-05 15.3 0.6 2 2 2e-05 0.00052 12.2 0.0 4 35 151 181 148 184 0.90 # 9786 # 10343 # 1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.530 1_34 - 341 Arch_ATPase PF01637.13 234 3.7e-05 15.4 0.0 1 1 1.4e-06 6.9e-05 14.5 0.0 6 50 140 181 139 227 0.76 # 27997 # 29019 # 1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.437 1_4 - 260 PhoH PF02562.11 205 1.6e-07 22.7 0.1 1 1 5e-09 2.5e-07 22.0 0.1 14 56 96 138 84 163 0.80 # 1910 # 2689 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.621 1_4 - 260 AAA_5 PF07728.9 139 9.3e-06 17.4 0.0 1 1 4.6e-07 2.3e-05 16.1 0.0 1 74 103 172 103 177 0.80 # 1910 # 2689 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.621 1_34 - 341 AAA_18 PF13238.1 129 4e-05 15.9 0.0 1 1 2e-06 0.0001 14.6 0.0 2 23 156 179 156 225 0.76 # 27997 # 29019 # 1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.437 1_1 - 130 DDE_Tnp_1_6 PF13751.1 125 1.2e-20 65.7 0.2 1 1 3.2e-22 1.6e-20 65.3 0.2 52 125 54 127 46 127 0.92 # 3 # 392 # 1 # ID=1_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.603 1_5 - 342 HTH_Tnp_IS1 PF12759.2 46 9.7e-06 17.0 0.1 1 1 3.6e-07 1.8e-05 16.1 0.1 17 43 13 39 3 41 0.83 # 2686 # 3711 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.637 1_4 - 260 DUF258 PF03193.11 161 0.00011 13.4 0.0 1 1 7.3e-06 0.00019 12.6 0.0 26 59 92 125 80 153 0.82 # 1910 # 2689 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.621 1_34 - 341 DUF258 PF03193.11 161 0.0003 12.0 0.0 1 1 2.1e-05 0.00053 11.2 0.0 22 69 138 186 123 196 0.81 # 27997 # 29019 # 1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.437 1_5 - 342 HTH_28 PF13518.1 52 6.7e-07 21.3 1.6 1 1 3.9e-08 9.8e-07 20.7 0.3 9 34 14 39 10 40 0.89 # 2686 # 3711 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.637 1_9 - 186 HTH_28 PF13518.1 52 6.7e-05 14.9 0.0 1 1 8.5e-06 0.00022 13.2 0.0 8 33 154 179 148 184 0.82 # 9786 # 10343 # 1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.530 1_5 - 342 DUF2089 PF09862.4 113 6.7e-05 14.7 0.0 1 1 2.3e-06 0.00012 13.9 0.0 34 70 2 38 1 45 0.94 # 2686 # 3711 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.637 1_5 - 342 HTH_24 PF13412.1 48 2.5e-05 15.6 0.1 1 1 9e-07 4.6e-05 14.8 0.1 11 39 12 39 10 40 0.87 # 2686 # 3711 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.637 1_4 - 260 Sigma54_activ_2 PF14532.1 138 0.0002 13.4 0.0 1 1 6.3e-06 0.00032 12.7 0.0 9 64 87 144 84 229 0.70 # 1910 # 2689 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.621 1_5 - 342 HTH_30 PF13556.1 59 8.7e-06 17.3 0.4 1 1 4.1e-07 2.1e-05 16.1 0.4 6 34 11 39 10 40 0.90 # 2686 # 3711 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.637 1_5 - 342 HTH_10 PF04967.7 53 0.00032 12.3 0.0 1 1 1.5e-05 0.00079 11.0 0.0 25 45 19 39 16 41 0.92 # 2686 # 3711 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.637 1_35 - 116 HTH_31 PF13560.1 64 8.1e-05 14.8 0.0 1 2 9.3e-06 0.00048 12.3 0.0 19 60 22 62 6 64 0.85 # 29222 # 29569 # -1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.457 1_35 - 116 HTH_31 PF13560.1 64 8.1e-05 14.8 0.0 2 2 0.064 3.3 0.1 0.0 28 45 79 97 73 99 0.80 # 29222 # 29569 # -1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.457 1_36 - 79 DNA_pol3_beta_3 PF02768.10 121 7.7e-05 14.2 0.0 1 1 1.6e-06 8.4e-05 14.1 0.0 49 105 20 76 8 78 0.88 # 29634 # 29870 # -1 # ID=1_36;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.451 1_5 - 342 HTH_36 PF13730.1 55 3.6e-05 15.9 0.0 1 1 1.4e-06 7.2e-05 14.9 0.0 27 47 19 39 11 40 0.93 # 2686 # 3711 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.637 1_34 - 341 T2SE PF00437.15 272 4.3e-48 155.4 0.0 1 1 9.8e-50 5e-48 155.2 0.0 7 270 31 302 25 304 0.94 # 27997 # 29019 # 1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.437 1_4 - 260 NACHT PF05729.7 166 6.5e-05 14.6 0.0 1 1 4.1e-06 0.00011 13.9 0.0 3 49 104 151 102 200 0.81 # 1910 # 2689 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.621 1_34 - 341 NACHT PF05729.7 166 0.00044 11.9 0.0 1 1 3.7e-05 0.00094 10.8 0.0 3 28 155 180 153 233 0.64 # 27997 # 29019 # 1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.437 1_34 - 341 UPF0079 PF02367.12 123 1.5e-06 19.9 0.0 1 1 4.9e-08 2.5e-06 19.1 0.0 7 44 144 181 138 186 0.85 # 27997 # 29019 # 1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.437 1_34 - 341 AAA_17 PF13207.1 121 8.8e-06 18.5 0.0 1 1 6.9e-07 1.7e-05 17.6 0.0 1 64 154 226 154 275 0.61 # 27997 # 29019 # 1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.437 1_4 - 260 AAA_17 PF13207.1 121 0.0002 14.2 0.0 1 1 1.3e-05 0.00033 13.4 0.0 2 26 104 131 103 216 0.74 # 1910 # 2689 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.621 1_4 - 260 AAA_25 PF13481.1 194 3.7e-07 21.7 0.1 1 1 2.2e-08 1.1e-06 20.1 0.1 9 60 72 128 68 201 0.77 # 1910 # 2689 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.621 1_4 - 260 AAA_14 PF13173.1 128 1.8e-07 23.1 0.0 1 2 1.7e-08 8.8e-07 20.9 0.0 3 97 102 203 100 219 0.64 # 1910 # 2689 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.621 1_4 - 260 AAA_14 PF13173.1 128 1.8e-07 23.1 0.0 2 2 0.048 2.5 0.0 0.0 14 46 215 247 212 257 0.80 # 1910 # 2689 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.621 1_5 - 342 HTH_Tnp_ISL3 PF13542.1 52 1.5e-05 16.1 0.3 1 1 7e-07 3.6e-05 14.9 0.3 23 50 13 40 9 40 0.87 # 2686 # 3711 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.637 1_4 - 260 NTPase_1 PF03266.10 168 0.00012 13.8 0.1 1 2 0.0015 0.077 4.6 0.1 2 30 104 132 103 143 0.82 # 1910 # 2689 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.621 1_4 - 260 NTPase_1 PF03266.10 168 0.00012 13.8 0.1 2 2 0.0003 0.015 6.9 0.0 87 108 155 176 141 202 0.77 # 1910 # 2689 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.621 1_34 - 341 KAP_NTPase PF07693.9 325 3.5e-05 14.8 0.0 1 1 1.6e-06 8e-05 13.6 0.0 18 53 150 183 135 225 0.78 # 27997 # 29019 # 1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.437 1_5 - 342 HTH_17 PF12728.2 51 7.6e-05 14.9 0.0 1 1 4.4e-06 0.00022 13.4 0.0 4 24 20 40 19 50 0.88 # 2686 # 3711 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.637 1_5 - 342 HTH_11 PF08279.7 55 2.8e-06 18.9 0.4 1 1 1.1e-07 5.9e-06 17.9 0.4 4 37 6 39 3 40 0.81 # 2686 # 3711 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.637 1_5 - 342 Sigma70_ECF PF07638.6 185 0.0002 13.0 0.0 1 1 8.2e-06 0.00042 12.0 0.0 140 172 4 38 2 46 0.82 # 2686 # 3711 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.637 1_9 - 186 TrmB PF01978.14 68 2.9e-05 15.7 0.0 1 1 1.1e-06 5.8e-05 14.8 0.0 19 44 155 180 150 181 0.89 # 9786 # 10343 # 1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.530 1_5 - 342 LacI PF00356.16 46 1.7e-05 16.4 0.2 1 1 1.2e-06 6e-05 14.6 0.0 2 25 20 43 19 50 0.86 # 2686 # 3711 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.637 1_38 - 860 AAA_10 PF12846.2 304 4.4e-34 110.1 0.0 1 1 3.2e-35 8.1e-34 109.3 0.0 7 303 480 770 475 771 0.91 # 30372 # 32951 # 1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.422 1_4 - 260 AAA_10 PF12846.2 304 1.9e-05 16.1 0.2 1 2 0.029 0.73 1.1 0.0 106 155 28 69 4 89 0.61 # 1910 # 2689 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.621 1_4 - 260 AAA_10 PF12846.2 304 1.9e-05 16.1 0.2 2 2 8.8e-06 0.00022 12.6 0.1 3 35 103 135 101 172 0.84 # 1910 # 2689 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.621 1_9 - 186 HTH_20 PF12840.2 61 2.2e-06 19.4 0.1 1 2 0.016 0.41 2.5 0.0 33 52 8 27 6 28 0.90 # 9786 # 10343 # 1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.530 1_9 - 186 HTH_20 PF12840.2 61 2.2e-06 19.4 0.1 2 2 1.8e-05 0.00046 12.0 0.1 3 43 110 177 108 180 0.91 # 9786 # 10343 # 1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.530 1_5 - 342 HTH_20 PF12840.2 61 3.9e-05 15.4 0.0 1 1 4e-06 0.0001 14.1 0.0 18 46 12 39 10 40 0.91 # 2686 # 3711 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.637 1_39 - 271 IPT PF01745.11 233 0.0022 9.1 4.9 1 2 0.019 0.95 0.5 0.1 125 173 41 90 28 99 0.75 # 32948 # 33760 # 1 # ID=1_39;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.402 1_39 - 271 IPT PF01745.11 233 0.0022 9.1 4.9 2 2 3.5e-05 0.0018 9.4 1.6 134 214 168 250 157 264 0.88 # 32948 # 33760 # 1 # ID=1_39;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.402 1_4 - 260 IstB_IS21 PF01695.12 178 4.4e-66 213.6 0.0 1 1 2.2e-67 1.1e-65 212.3 0.0 2 177 56 233 55 234 0.96 # 1910 # 2689 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.621 1_49 - 74 SSB PF00436.20 104 5.8e-27 85.6 0.0 1 1 2.7e-28 6.8e-27 85.4 0.0 1 65 6 71 6 72 0.98 # 39982 # 40203 # 1 # ID=1_49;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.495 1_11 - 77 SSB PF00436.20 104 9.9e-10 30.3 0.2 1 1 4.9e-11 1.3e-09 29.9 0.2 72 103 1 35 1 36 0.90 # 11557 # 11787 # 1 # ID=1_11;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.506 # # Program: hmmsearch # Version: 3.1b1 (May 2013) # Pipeline mode: SEARCH # Query file: /tmp/57c1bc19-9bd1-4f55-87d4-e92cd5f7c4de # Target file: checkm_output/bins/pm289/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm289/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/57c1bc19-9bd1-4f55-87d4-e92cd5f7c4de checkm_output/bins/pm289/genes.faa # Current dir: /mnt/data/azomer/reads-for-assembly/files/output/allcontigs/output_1512029421078392887 # Date: Thu Nov 30 10:01:46 2017 # [ok]