# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_2 - 226 TetR_N PF00440.18 47 3.5e-21 64.4 0.1 1 2 6.9e-21 6.9e-20 60.2 0.0 2 47 19 64 18 64 0.97 # 455 # 1132 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.627 1_2 - 226 TetR_N PF00440.18 47 3.5e-21 64.4 0.1 2 2 0.013 0.13 1.8 0.1 1 16 179 194 179 196 0.91 # 455 # 1132 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.627 1_3 - 400 TIGR01394 TIGR01394 594 0.00015 9.3 0.0 1 1 2.2e-05 0.00022 8.8 0.0 408 486 267 343 261 354 0.84 # 1211 # 2410 # 1 # ID=1_3;partial=00;start_type=GTG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.628 1_2 - 226 HTH_23 PF13384.1 50 8.9e-05 11.9 0.2 1 2 4.8e-05 0.00048 9.5 0.0 10 35 22 51 14 64 0.75 # 455 # 1132 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.627 1_2 - 226 HTH_23 PF13384.1 50 8.9e-05 11.9 0.2 2 2 0.083 0.83 -0.7 0.1 9 20 97 108 96 110 0.84 # 455 # 1132 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.627 1_2 - 226 HTH_Tnp_1_2 PF13022.1 142 7.9e-05 12.1 0.0 1 1 1.2e-05 0.00012 11.6 0.0 22 77 24 73 5 79 0.76 # 455 # 1132 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.627 1_2 - 226 HTH_20 PF12840.2 61 2.4e-05 13.8 0.1 1 1 1.8e-05 0.00018 11.0 0.0 21 46 30 55 18 63 0.85 # 455 # 1132 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.627 1_8 - 272 Pterin_bind PF00809.17 210 2.8e-61 196.1 0.0 1 1 3.4e-62 3.4e-61 195.9 0.0 1 209 10 216 10 217 0.98 # 5761 # 6576 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGxAG;rbs_spacer=5-10bp;gc_cont=0.608 # # Program: hmmsearch # Version: 3.1b1 (May 2013) # Pipeline mode: SEARCH # Query file: /tmp/10856eeb-ac03-472e-b3c8-f9b1e292d6f7 # Target file: checkm_output/bins/pm284/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm284/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/10856eeb-ac03-472e-b3c8-f9b1e292d6f7 checkm_output/bins/pm284/genes.faa # Current dir: /mnt/data/azomer/reads-for-assembly/files/output/allcontigs/output_1512029421078392887 # Date: Thu Nov 30 10:01:39 2017 # [ok]