# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_4 - 312 HTH_38 PF13936.1 44 7.3e-09 23.6 0.0 1 1 4.5e-09 1.8e-08 22.3 0.0 16 39 283 306 275 308 0.91 # 3823 # 4758 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.534 1_4 - 312 Sigma70_r4_2 PF08281.7 54 9.2e-07 16.8 0.0 1 1 7.8e-07 3.1e-06 15.1 0.0 24 47 285 308 276 310 0.88 # 3823 # 4758 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.534 1_4 - 312 Terminase_5 PF06056.7 58 3.8e-08 21.3 0.0 1 1 2.5e-08 1e-07 19.9 0.0 12 34 286 308 275 311 0.88 # 3823 # 4758 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.534 1_4 - 312 HTH_Tnp_1 PF01527.15 76 1.2e-05 13.7 0.0 1 1 9.6e-06 3.9e-05 12.1 0.0 17 43 280 307 274 309 0.88 # 3823 # 4758 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.534 1_4 - 312 GerE PF00196.14 58 7.9e-06 13.6 0.2 1 2 0.023 0.09 0.6 0.0 8 30 137 159 136 163 0.86 # 3823 # 4758 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.534 1_4 - 312 GerE PF00196.14 58 7.9e-06 13.6 0.2 2 2 2.1e-05 8.5e-05 10.3 0.0 12 37 281 306 279 309 0.92 # 3823 # 4758 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.534 1_4 - 312 Sigma70_r4 PF04545.11 50 1.7e-05 12.5 0.0 1 2 0.07 0.28 -0.9 0.0 10 32 138 159 136 162 0.70 # 3823 # 4758 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.534 1_4 - 312 Sigma70_r4 PF04545.11 50 1.7e-05 12.5 0.0 2 2 2.1e-05 8.6e-05 10.3 0.0 17 38 278 305 275 307 0.82 # 3823 # 4758 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.534 1_4 - 312 HTH_3 PF01381.17 55 1.6e-07 19.5 0.0 1 1 1.3e-07 5.3e-07 17.9 0.0 5 29 283 307 279 308 0.90 # 3823 # 4758 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.534 1_4 - 312 HTH_23 PF13384.1 50 6.2e-12 33.4 0.1 1 1 4.6e-12 1.8e-11 31.9 0.0 5 37 275 307 272 311 0.94 # 3823 # 4758 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.534 1_4 - 312 HTH_29 PF13551.1 112 2.9e-06 15.8 0.3 1 1 2.8e-06 1.1e-05 13.9 0.1 1 33 277 308 277 310 0.93 # 3823 # 4758 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.534 1_4 - 312 HTH_28 PF13518.1 52 2.6e-08 22.3 0.3 1 1 1.9e-08 7.6e-08 20.7 0.0 2 32 277 307 276 308 0.86 # 3823 # 4758 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.534 1_4 - 312 HTH_30 PF13556.1 59 6.7e-08 20.5 0.1 1 1 4.1e-08 1.6e-07 19.3 0.1 7 31 282 306 280 308 0.93 # 3823 # 4758 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.534 1_4 - 312 CENP-B_N PF04218.8 53 2.5e-06 15.3 0.0 1 1 2.2e-06 8.6e-06 13.6 0.0 19 46 284 311 280 311 0.93 # 3823 # 4758 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.534 1_4 - 312 HTH_17 PF12728.2 51 1.2e-06 17.1 0.2 1 2 0.049 0.2 0.5 0.0 13 25 182 194 177 198 0.84 # 3823 # 4758 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.534 1_4 - 312 HTH_17 PF12728.2 51 1.2e-06 17.1 0.2 2 2 9.9e-06 4e-05 12.3 0.0 2 22 288 308 288 311 0.86 # 3823 # 4758 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.534 1_4 - 312 Phage_terminase PF10668.4 60 2.1e-05 12.7 0.0 1 1 1.5e-05 6e-05 11.3 0.0 25 43 290 308 284 311 0.88 # 3823 # 4758 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.534 # # Program: hmmsearch # Version: 3.1b1 (May 2013) # Pipeline mode: SEARCH # Query file: /tmp/7c74b99c-e06f-4eaf-b9e9-6ad3e672d114 # Target file: checkm_output/bins/pm279/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm279/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/7c74b99c-e06f-4eaf-b9e9-6ad3e672d114 checkm_output/bins/pm279/genes.faa # Current dir: /mnt/data/azomer/reads-for-assembly/files/output/allcontigs/output_1512029421078392887 # Date: Thu Nov 30 10:01:33 2017 # [ok]