# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_9 - 226 TetR_N PF00440.18 47 3.9e-21 64.4 0.1 1 2 6.9e-21 7.6e-20 60.2 0.0 2 47 19 64 18 64 0.97 # 6981 # 7658 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.627 1_9 - 226 TetR_N PF00440.18 47 3.9e-21 64.4 0.1 2 2 0.013 0.14 1.8 0.1 1 16 179 194 179 196 0.91 # 6981 # 7658 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.627 1_1 - 178 TIGR01394 TIGR01394 594 3.9e-05 11.4 0.0 1 1 4.5e-06 4.9e-05 11.1 0.0 407 487 44 122 38 132 0.85 # 1 # 534 # 1 # ID=1_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.610 1_9 - 226 HTH_23 PF13384.1 50 9.8e-05 11.9 0.2 1 2 4.8e-05 0.00053 9.5 0.0 10 35 22 51 14 64 0.75 # 6981 # 7658 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.627 1_9 - 226 HTH_23 PF13384.1 50 9.8e-05 11.9 0.2 2 2 0.083 0.92 -0.7 0.1 9 20 97 108 96 110 0.84 # 6981 # 7658 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.627 1_9 - 226 HTH_Tnp_1_2 PF13022.1 142 8.7e-05 12.1 0.0 1 1 1.2e-05 0.00013 11.6 0.0 22 77 24 73 5 79 0.76 # 6981 # 7658 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.627 1_9 - 226 HTH_20 PF12840.2 61 2.6e-05 13.8 0.1 1 1 1.8e-05 0.0002 11.0 0.0 21 46 30 55 18 63 0.85 # 6981 # 7658 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.627 1_6 - 272 Pterin_bind PF00809.17 210 3.1e-61 196.1 0.0 1 1 3.4e-62 3.7e-61 195.9 0.0 1 209 10 216 10 217 0.98 # 3885 # 4700 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGxAG;rbs_spacer=5-10bp;gc_cont=0.608 # # Program: hmmsearch # Version: 3.1b1 (May 2013) # Pipeline mode: SEARCH # Query file: /tmp/19c13e1a-4afb-4ffb-a97b-f0fff0202c7e # Target file: checkm_output/bins/pm270/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm270/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/19c13e1a-4afb-4ffb-a97b-f0fff0202c7e checkm_output/bins/pm270/genes.faa # Current dir: /mnt/data/azomer/reads-for-assembly/files/output/allcontigs/output_1512029421078392887 # Date: Thu Nov 30 10:01:23 2017 # [ok]