# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_51 - 228 Cons_hypoth95 PF03602.10 183 1.3e-05 17.5 0.0 1 2 0.00041 0.039 6.1 0.0 112 146 18 54 8 81 0.66 # 44361 # 45044 # -1 # ID=1_51;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.561 1_51 - 228 Cons_hypoth95 PF03602.10 183 1.3e-05 17.5 0.0 2 2 4e-05 0.0038 9.4 0.0 41 62 162 183 145 218 0.78 # 44361 # 45044 # -1 # ID=1_51;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.561 1_82 - 518 ABC_tran PF00005.22 137 7.6e-05 15.9 0.0 1 1 4.4e-06 0.00021 14.5 0.0 12 40 226 255 216 298 0.81 # 68559 # 70112 # 1 # ID=1_82;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.471 1_95 - 303 ABC_tran PF00005.22 137 8.2e-05 15.8 0.0 1 1 3.1e-06 0.00015 15.0 0.0 16 35 162 181 152 215 0.87 # 81833 # 82741 # 1 # ID=1_95;partial=01;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.513 1_51 - 228 TIGR00095 TIGR00095 194 0.00031 13.0 0.0 1 2 0.0016 0.15 4.2 0.0 124 138 20 34 9 79 0.75 # 44361 # 45044 # -1 # ID=1_51;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.561 1_51 - 228 TIGR00095 TIGR00095 194 0.00031 13.0 0.0 2 2 0.00024 0.023 6.8 0.0 53 86 164 199 155 218 0.77 # 44361 # 45044 # -1 # ID=1_51;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.561 1_42 - 653 HTH_38 PF13936.1 44 0.00076 11.9 0.0 1 1 2.3e-05 0.0022 10.5 0.0 15 42 148 175 142 175 0.89 # 37761 # 39719 # -1 # ID=1_42;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.582 1_95 - 303 MobB PF03205.9 140 1e-05 18.1 0.0 1 2 0.011 1.1 1.8 0.0 14 60 61 108 61 129 0.88 # 81833 # 82741 # 1 # ID=1_95;partial=01;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.513 1_95 - 303 MobB PF03205.9 140 1e-05 18.1 0.0 2 2 2.3e-06 0.00022 13.8 0.0 5 26 162 183 160 193 0.90 # 81833 # 82741 # 1 # ID=1_95;partial=01;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.513 1_39 - 199 TilS_C PF11734.3 74 0.00016 13.7 0.0 1 1 5.1e-06 0.00049 12.2 0.0 29 45 7 23 6 28 0.88 # 35963 # 36559 # -1 # ID=1_39;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.553 1_82 - 518 AAA_19 PF13245.1 76 9.2e-05 15.0 0.0 1 1 2.7e-06 0.00025 13.6 0.0 10 46 226 259 218 270 0.79 # 68559 # 70112 # 1 # ID=1_82;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.471 1_57 - 211 CbiA PF01656.18 195 6e-16 51.2 0.1 1 1 1.5e-17 1.5e-15 50.0 0.1 3 178 7 164 5 180 0.75 # 48995 # 49627 # -1 # ID=1_57;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.468 1_51 - 228 MethyltransfD12 PF02086.10 260 0.00036 12.8 0.0 1 2 0.014 1.3 1.2 0.0 173 188 16 31 10 92 0.81 # 44361 # 45044 # -1 # ID=1_51;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.561 1_51 - 228 MethyltransfD12 PF02086.10 260 0.00036 12.8 0.0 2 2 4e-05 0.0038 9.5 0.0 20 46 163 189 148 197 0.78 # 44361 # 45044 # -1 # ID=1_51;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.561 1_68 - 96 Sigma70_r4_2 PF08281.7 54 4.1e-08 25.5 0.2 1 2 0.099 9.4 -1.3 0.0 6 14 4 12 3 13 0.83 # 59498 # 59785 # 1 # ID=1_68;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.448 1_68 - 96 Sigma70_r4_2 PF08281.7 54 4.1e-08 25.5 0.2 2 2 1.4e-09 1.4e-07 23.8 0.0 10 54 21 64 12 64 0.83 # 59498 # 59785 # 1 # ID=1_68;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.448 1_82 - 518 AAA_23 PF13476.1 202 0.00015 15.0 0.1 1 1 1.1e-05 0.00052 13.2 0.0 20 38 226 244 209 249 0.86 # 68559 # 70112 # 1 # ID=1_82;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.471 1_95 - 303 AAA_23 PF13476.1 202 0.00018 14.7 0.0 1 1 5.3e-06 0.00025 14.2 0.0 19 40 157 178 142 208 0.82 # 81833 # 82741 # 1 # ID=1_95;partial=01;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.513 1_51 - 228 Methyltransf_26 PF13659.1 117 8.2e-12 38.1 0.0 1 2 2.1e-07 2e-05 17.5 0.0 57 114 7 71 2 74 0.69 # 44361 # 45044 # -1 # ID=1_51;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.561 1_51 - 228 Methyltransf_26 PF13659.1 117 8.2e-12 38.1 0.0 2 2 9.7e-08 9.2e-06 18.6 0.0 4 45 167 207 164 223 0.82 # 44361 # 45044 # -1 # ID=1_51;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.561 1_82 - 518 AAA_30 PF13604.1 196 0.00017 14.0 0.0 1 1 3.2e-06 0.0003 13.2 0.0 4 44 211 251 209 280 0.86 # 68559 # 70112 # 1 # ID=1_82;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.471 1_39 - 199 TIGR02433 TIGR02433 47 0.00023 13.2 0.1 1 1 7.7e-06 0.00073 11.6 0.0 30 45 8 23 7 25 0.91 # 35963 # 36559 # -1 # ID=1_39;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.553 1_68 - 96 GerE PF00196.14 58 1.3e-06 20.5 0.0 1 1 1.9e-08 1.8e-06 20.1 0.0 3 49 21 67 19 72 0.89 # 59498 # 59785 # 1 # ID=1_68;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.448 1_26 - 764 TraG-D_C PF12696.2 128 4.6e-07 22.6 0.2 1 1 1.2e-08 1.1e-06 21.4 0.2 1 88 437 524 437 554 0.82 # 24012 # 26303 # 1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.499 1_57 - 211 MipZ PF09140.6 261 5.8e-09 28.2 0.2 1 3 7.2e-07 6.8e-05 14.8 0.1 5 51 7 53 3 59 0.89 # 48995 # 49627 # -1 # ID=1_57;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.468 1_57 - 211 MipZ PF09140.6 261 5.8e-09 28.2 0.2 2 3 1.2e-05 0.0011 10.8 0.0 88 135 69 116 58 151 0.82 # 48995 # 49627 # -1 # ID=1_57;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.468 1_57 - 211 MipZ PF09140.6 261 5.8e-09 28.2 0.2 3 3 0.066 6.2 -1.4 0.0 206 237 161 193 137 202 0.76 # 48995 # 49627 # -1 # ID=1_57;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.468 1_51 - 228 UPF0020 PF01170.13 180 1.2e-05 17.7 0.0 1 2 0.00029 0.028 6.8 0.0 103 119 17 33 4 88 0.73 # 44361 # 45044 # -1 # ID=1_51;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.561 1_51 - 228 UPF0020 PF01170.13 180 1.2e-05 17.7 0.0 2 2 6.2e-05 0.0058 9.0 0.0 28 54 163 189 158 221 0.67 # 44361 # 45044 # -1 # ID=1_51;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.561 1_74 - 198 Trp_repressor PF01371.14 88 0.00042 13.1 0.0 1 1 6.7e-06 0.00064 12.5 0.0 1 40 103 142 103 147 0.95 # 62700 # 63293 # 1 # ID=1_74;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.379 1_82 - 518 AAA PF00004.24 132 0.00045 13.3 0.0 1 3 0.089 4.2 0.4 0.0 38 57 81 100 24 115 0.79 # 68559 # 70112 # 1 # ID=1_82;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.471 1_82 - 518 AAA PF00004.24 132 0.00045 13.3 0.0 2 3 0.00066 0.031 7.3 0.0 1 21 228 248 228 277 0.83 # 68559 # 70112 # 1 # ID=1_82;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.471 1_82 - 518 AAA PF00004.24 132 0.00045 13.3 0.0 3 3 0.068 3.2 0.8 0.0 9 66 442 508 436 515 0.62 # 68559 # 70112 # 1 # ID=1_82;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.471 1_57 - 211 AAA PF00004.24 132 0.00079 12.5 0.0 1 1 2.9e-05 0.0014 11.7 0.0 8 38 13 55 9 104 0.73 # 48995 # 49627 # -1 # ID=1_57;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.468 1_42 - 653 KorB PF08535.5 93 1.5e-05 17.9 0.0 1 1 5.7e-07 5.4e-05 16.2 0.0 2 43 152 193 151 202 0.93 # 37761 # 39719 # -1 # ID=1_42;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.582 1_51 - 228 N6_N4_Mtase PF01555.13 231 6e-37 120.1 0.0 1 2 1.2e-15 1.1e-13 44.0 0.0 1 114 21 124 21 137 0.89 # 44361 # 45044 # -1 # ID=1_51;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.561 1_51 - 228 N6_N4_Mtase PF01555.13 231 6e-37 120.1 0.0 2 2 5.4e-25 5.1e-23 74.5 0.0 169 228 141 200 126 203 0.90 # 44361 # 45044 # -1 # ID=1_51;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.561 1_55 - 325 Hydantoinase_A PF01968.13 290 8.5e-06 17.8 2.2 1 2 1.1e-06 0.00011 14.2 0.7 75 119 164 205 130 235 0.80 # 47408 # 48382 # -1 # ID=1_55;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.459 1_55 - 325 Hydantoinase_A PF01968.13 290 8.5e-06 17.8 2.2 2 2 0.0029 0.28 3.0 0.0 223 262 253 296 216 311 0.70 # 47408 # 48382 # -1 # ID=1_55;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.459 1_82 - 518 AAA_16 PF13191.1 185 7e-05 15.7 0.0 1 1 4.6e-06 0.00022 14.1 0.0 8 52 213 254 212 330 0.81 # 68559 # 70112 # 1 # ID=1_82;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.471 1_95 - 303 AAA_16 PF13191.1 185 0.00023 14.0 0.0 1 1 8.3e-06 0.00039 13.2 0.0 27 52 160 188 148 282 0.81 # 81833 # 82741 # 1 # ID=1_95;partial=01;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.513 1_95 - 303 AAA_22 PF13401.1 131 7.7e-06 18.9 0.0 1 1 3.4e-07 1.6e-05 17.9 0.0 4 46 157 196 152 233 0.76 # 81833 # 82741 # 1 # ID=1_95;partial=01;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.513 1_82 - 518 AAA_22 PF13401.1 131 0.00027 14.0 0.0 1 1 1.3e-05 0.00062 12.8 0.0 6 28 227 249 222 330 0.78 # 68559 # 70112 # 1 # ID=1_82;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.471 1_30 - 283 Methyltransf_27 PF13708.1 194 7.4e-68 220.7 0.0 1 1 1.1e-69 1e-67 220.3 0.0 2 194 85 278 84 278 0.96 # 30037 # 30885 # -1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.508 1_82 - 518 AAA_29 PF13555.1 62 2.5e-05 16.6 0.0 1 1 1.1e-06 5.1e-05 15.6 0.0 21 40 224 242 216 254 0.83 # 68559 # 70112 # 1 # ID=1_82;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.471 1_95 - 303 AAA_29 PF13555.1 62 2.6e-05 16.6 0.0 1 1 1.7e-06 7.9e-05 15.0 0.0 26 44 160 178 151 187 0.84 # 81833 # 82741 # 1 # ID=1_95;partial=01;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.513 1_32 - 84 HTH_3 PF01381.17 55 2.7e-05 16.9 0.0 1 2 1e-06 9.7e-05 15.1 0.0 1 34 6 39 6 45 0.90 # 31464 # 31715 # 1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.563 1_32 - 84 HTH_3 PF01381.17 55 2.7e-05 16.9 0.0 2 2 0.083 7.9 -0.7 0.0 39 52 67 80 65 83 0.66 # 31464 # 31715 # 1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.563 1_42 - 653 HTH_23 PF13384.1 50 6.4e-07 21.8 0.1 1 1 2.6e-07 8.2e-06 18.3 0.0 13 40 149 176 143 180 0.91 # 37761 # 39719 # -1 # ID=1_42;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.582 1_68 - 96 HTH_23 PF13384.1 50 3.1e-05 16.5 0.0 1 1 1.5e-06 4.8e-05 15.9 0.0 12 41 31 60 24 73 0.76 # 59498 # 59785 # 1 # ID=1_68;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.448 1_32 - 84 HTH_23 PF13384.1 50 3.4e-05 16.3 0.3 1 2 1.1e-05 0.00033 13.2 0.1 17 33 14 30 6 38 0.86 # 31464 # 31715 # 1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.563 1_32 - 84 HTH_23 PF13384.1 50 3.4e-05 16.3 0.3 2 2 0.072 2.3 1.0 0.0 5 22 63 82 59 83 0.75 # 31464 # 31715 # 1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.563 1_86 - 219 zf-DHHC PF01529.15 174 0.099 4.8 6.7 1 2 0.00037 0.035 6.3 4.0 85 163 4 82 1 93 0.82 # 72396 # 73052 # 1 # ID=1_86;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.422 1_86 - 219 zf-DHHC PF01529.15 174 0.099 4.8 6.7 2 2 0.083 7.9 -1.4 0.1 140 146 129 135 82 187 0.59 # 72396 # 73052 # 1 # ID=1_86;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.422 1_32 - 84 HTH_19 PF12844.2 64 7.5e-05 15.6 0.0 1 1 1.2e-06 0.00011 15.1 0.0 7 53 9 56 5 67 0.87 # 31464 # 31715 # 1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.563 1_32 - 84 DUF1870 PF08965.5 118 0.00028 13.4 1.2 1 1 3.7e-06 0.00036 13.1 1.2 1 75 1 78 1 81 0.69 # 31464 # 31715 # 1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.563 1_68 - 96 HTH_29 PF13551.1 112 0.00014 14.9 0.0 1 1 4.3e-06 0.0002 14.3 0.0 8 36 33 60 27 76 0.79 # 59498 # 59785 # 1 # ID=1_68;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.448 1_42 - 653 HTH_29 PF13551.1 112 0.0002 14.4 0.1 1 1 2.1e-05 0.001 12.1 0.0 6 37 147 178 142 221 0.82 # 37761 # 39719 # -1 # ID=1_42;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.582 1_82 - 518 G-alpha PF00503.15 389 0.00065 11.2 0.0 1 2 0.069 6.6 -2.0 0.0 234 272 70 113 51 117 0.81 # 68559 # 70112 # 1 # ID=1_82;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.471 1_82 - 518 G-alpha PF00503.15 389 0.00065 11.2 0.0 2 2 1.9e-05 0.0018 9.7 0.0 58 87 225 254 214 312 0.83 # 68559 # 70112 # 1 # ID=1_82;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.471 1_33 - 69 UBA PF00627.26 37 0.00011 14.9 0.3 1 2 0.021 2 1.4 0.0 6 16 4 14 1 17 0.84 # 31746 # 31952 # -1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.512 1_33 - 69 UBA PF00627.26 37 0.00011 14.9 0.3 2 2 1.3e-05 0.0013 11.5 0.0 5 22 35 52 32 55 0.88 # 31746 # 31952 # -1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.512 1_6 - 231 OB_NTP_bind PF07717.11 114 0.00052 12.7 0.0 1 1 7.8e-06 0.00074 12.2 0.0 24 83 28 97 16 158 0.79 # 5228 # 5920 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.509 1_92 - 195 DNA_pol3_delta PF06144.8 172 2e-06 20.3 0.0 1 1 3e-08 2.9e-06 19.7 0.0 35 99 92 152 74 179 0.80 # 79584 # 80168 # 1 # ID=1_92;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.403 1_26 - 764 TrwB_AAD_bind PF10412.4 386 2.1e-06 19.3 0.2 1 2 9.3e-05 0.0089 7.4 0.0 11 32 132 153 126 157 0.84 # 24012 # 26303 # 1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.499 1_26 - 764 TrwB_AAD_bind PF10412.4 386 2.1e-06 19.3 0.2 2 2 3e-05 0.0029 9.0 0.1 247 332 440 525 427 555 0.88 # 24012 # 26303 # 1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.499 1_57 - 211 TIGR01968 TIGR01968 261 1.3e-06 20.4 0.5 1 2 3.4e-06 0.00032 12.6 0.1 3 40 4 41 2 43 0.91 # 48995 # 49627 # -1 # ID=1_57;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.468 1_57 - 211 TIGR01968 TIGR01968 261 1.3e-06 20.4 0.5 2 2 0.00028 0.027 6.3 0.0 110 169 78 137 63 157 0.76 # 48995 # 49627 # -1 # ID=1_57;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.468 1_95 - 303 AAA_18 PF13238.1 129 1.3e-05 18.4 0.0 1 1 4.1e-07 2e-05 17.8 0.0 2 42 161 197 161 233 0.83 # 81833 # 82741 # 1 # ID=1_95;partial=01;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.513 1_82 - 518 AAA_18 PF13238.1 129 0.00035 13.8 0.0 1 1 2.2e-05 0.001 12.2 0.0 1 18 228 245 228 312 0.86 # 68559 # 70112 # 1 # ID=1_82;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.471 1_51 - 228 Methyltransf_15 PF09445.5 164 0.00076 11.9 0.0 1 2 0.045 4.3 -0.3 0.0 53 79 4 29 2 32 0.90 # 44361 # 45044 # -1 # ID=1_51;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.561 1_51 - 228 Methyltransf_15 PF09445.5 164 0.00076 11.9 0.0 2 2 4.2e-05 0.004 9.5 0.0 3 31 166 194 164 209 0.86 # 44361 # 45044 # -1 # ID=1_51;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.561 1_9 - 235 DUF3810 PF12725.2 318 0.00097 10.9 1.1 1 1 1.6e-05 0.0015 10.3 1.1 90 174 106 189 82 194 0.87 # 8206 # 8910 # 1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.508 1_95 - 303 DUF87 PF01935.12 229 0.00046 12.9 0.0 1 1 8.3e-06 0.00079 12.1 0.0 28 56 162 191 161 192 0.88 # 81833 # 82741 # 1 # ID=1_95;partial=01;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.513 1_68 - 96 HTH_28 PF13518.1 52 0.00014 14.7 0.0 1 1 4.3e-06 0.00041 13.2 0.0 9 38 33 62 26 75 0.86 # 59498 # 59785 # 1 # ID=1_68;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.448 1_95 - 303 Miro PF08477.8 119 0.0009 12.6 0.0 1 1 4.3e-05 0.0041 10.5 0.0 3 21 161 179 161 205 0.79 # 81833 # 82741 # 1 # ID=1_95;partial=01;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.513 1_32 - 84 HTH_31 PF13560.1 64 6e-07 22.5 2.0 1 2 1e-08 9.5e-07 21.9 1.2 3 43 3 43 2 57 0.86 # 31464 # 31715 # 1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.563 1_32 - 84 HTH_31 PF13560.1 64 6e-07 22.5 2.0 2 2 0.1 9.5 -0.6 0.0 17 34 65 72 44 82 0.58 # 31464 # 31715 # 1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.563 1_82 - 518 T2SE PF00437.15 272 1.4e-41 135.0 0.0 1 1 5.4e-43 2.6e-41 134.1 0.0 10 271 97 373 90 374 0.85 # 68559 # 70112 # 1 # ID=1_82;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.471 1_95 - 303 T2SE PF00437.15 272 1.3e-35 115.4 0.0 1 1 3.7e-37 1.7e-35 115.0 0.0 120 261 149 296 124 303 0.89 # 81833 # 82741 # 1 # ID=1_95;partial=01;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.513 1_55 - 325 StbA PF06406.6 318 1.9e-136 446.9 1.2 1 1 2.3e-138 2.2e-136 446.7 1.2 1 317 1 319 1 320 0.99 # 47408 # 48382 # -1 # ID=1_55;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.459 1_82 - 518 AAA_17 PF13207.1 121 2.8e-05 17.8 0.1 1 1 2.2e-06 0.00011 15.9 0.0 1 23 227 249 227 342 0.74 # 68559 # 70112 # 1 # ID=1_82;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.471 1_95 - 303 AAA_17 PF13207.1 121 9e-05 16.1 0.0 1 1 3.2e-06 0.00015 15.4 0.0 3 48 161 209 161 251 0.76 # 81833 # 82741 # 1 # ID=1_95;partial=01;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.513 1_95 - 303 AAA_25 PF13481.1 194 0.00015 14.0 0.0 1 1 4.8e-06 0.00023 13.4 0.0 24 58 148 182 124 210 0.79 # 81833 # 82741 # 1 # ID=1_95;partial=01;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.513 1_82 - 518 AAA_25 PF13481.1 194 0.0002 13.6 0.1 1 2 7.5e-05 0.0035 9.5 0.0 19 65 211 260 200 270 0.72 # 68559 # 70112 # 1 # ID=1_82;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.471 1_82 - 518 AAA_25 PF13481.1 194 0.0002 13.6 0.1 2 2 0.046 2.2 0.4 0.0 153 190 297 337 292 340 0.73 # 68559 # 70112 # 1 # ID=1_82;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.471 1_68 - 96 HTH_Tnp_ISL3 PF13542.1 52 5.8e-05 15.1 0.0 1 1 9.7e-07 9.2e-05 14.5 0.0 29 50 38 59 34 60 0.89 # 59498 # 59785 # 1 # ID=1_68;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.448 1_61 - 197 PaaX PF07848.7 70 0.00031 13.6 0.0 1 1 6.7e-06 0.00064 12.6 0.0 15 68 23 80 13 82 0.77 # 52234 # 52824 # 1 # ID=1_61;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.648 1_95 - 303 RNA_helicase PF00910.17 107 7.1e-05 15.8 0.0 1 1 1.3e-06 0.00013 15.0 0.0 2 28 161 187 160 206 0.83 # 81833 # 82741 # 1 # ID=1_95;partial=01;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.513 1_95 - 303 ATP_bind_1 PF03029.12 238 3.3e-05 16.3 0.0 1 1 5.3e-07 5.1e-05 15.7 0.0 1 23 162 184 162 197 0.86 # 81833 # 82741 # 1 # ID=1_95;partial=01;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.513 1_82 - 518 DAP3 PF10236.4 309 0.0006 11.6 0.0 1 1 1.2e-05 0.0011 10.7 0.0 21 42 223 244 214 253 0.86 # 68559 # 70112 # 1 # ID=1_82;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.471 1_55 - 325 MreB_Mbl PF06723.8 327 0.00013 13.4 0.6 1 2 0.00012 0.012 7.0 0.1 123 162 142 183 116 193 0.73 # 47408 # 48382 # -1 # ID=1_55;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.459 1_55 - 325 MreB_Mbl PF06723.8 327 0.00013 13.4 0.6 2 2 0.00054 0.051 4.9 0.1 259 318 260 320 233 324 0.68 # 47408 # 48382 # -1 # ID=1_55;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.459 1_14 - 1015 AAA_10 PF12846.2 304 1.1e-30 99.9 0.0 1 1 1.1e-31 2.5e-30 98.7 0.0 8 302 502 897 498 898 0.89 # 11018 # 14062 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.508 1_26 - 764 AAA_10 PF12846.2 304 2.4e-05 16.7 1.0 1 1 3.1e-06 7.5e-05 15.1 1.0 2 287 137 501 136 514 0.62 # 24012 # 26303 # 1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.499 1_82 - 518 AAA_10 PF12846.2 304 0.00021 13.6 0.0 1 1 1.7e-05 0.0004 12.7 0.0 4 30 228 256 226 304 0.78 # 68559 # 70112 # 1 # ID=1_82;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.471 1_95 - 303 AAA_10 PF12846.2 304 0.00045 12.5 0.0 1 1 3e-05 0.00071 11.8 0.0 2 21 158 177 157 196 0.83 # 81833 # 82741 # 1 # ID=1_95;partial=01;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.513 1_57 - 211 ArsA_ATPase PF02374.10 305 0.00027 12.8 1.2 1 2 7.6e-06 0.00072 11.4 0.8 5 32 7 34 1 48 0.85 # 48995 # 49627 # -1 # ID=1_57;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.468 1_57 - 211 ArsA_ATPase PF02374.10 305 0.00027 12.8 1.2 2 2 0.04 3.8 -0.8 0.0 108 134 57 87 35 89 0.66 # 48995 # 49627 # -1 # ID=1_57;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.468 1_57 - 211 AAA_31 PF13614.1 157 8.7e-07 21.8 0.0 1 2 8.4e-07 7.9e-05 15.5 0.0 2 44 4 46 4 61 0.86 # 48995 # 49627 # -1 # ID=1_57;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.468 1_57 - 211 AAA_31 PF13614.1 157 8.7e-07 21.8 0.0 2 2 0.0023 0.22 4.3 0.0 112 151 72 112 57 117 0.82 # 48995 # 49627 # -1 # ID=1_57;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.468 1_33 - 69 Yae1_N PF09811.4 39 5.2e-07 22.0 3.5 1 1 9e-09 8.6e-07 21.3 3.5 11 30 9 28 8 30 0.79 # 31746 # 31952 # -1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.512 1_44 - 176 SSB PF00436.20 104 1.4e-40 130.3 0.2 1 1 1.9e-42 1.8e-40 129.9 0.2 1 101 6 109 6 112 0.95 # 40069 # 40596 # -1 # ID=1_44;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.595 # # Program: hmmsearch # Version: 3.1b1 (May 2013) # Pipeline mode: SEARCH # Query file: /tmp/cb030a54-cadf-4468-8b39-91330b058bc5 # Target file: checkm_output/bins/pm269/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm269/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/cb030a54-cadf-4468-8b39-91330b058bc5 checkm_output/bins/pm269/genes.faa # Current dir: /mnt/data/azomer/reads-for-assembly/files/output/allcontigs/output_1512029421078392887 # Date: Thu Nov 30 10:01:28 2017 # [ok]