# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_38 - 228 Cons_hypoth95 PF03602.10 183 2.4e-05 16.9 0.0 1 2 0.00065 0.073 5.5 0.0 114 146 20 54 10 82 0.65 # 27941 # 28624 # 1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.554 1_38 - 228 Cons_hypoth95 PF03602.10 183 2.4e-05 16.9 0.0 2 2 4e-05 0.0045 9.4 0.0 41 62 162 183 145 218 0.78 # 27941 # 28624 # 1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.554 1_67 - 341 HTH_IclR PF09339.5 52 2.4e-06 20.2 0.1 1 1 5.9e-08 6.6e-06 18.8 0.1 15 40 14 39 13 40 0.95 # 53378 # 54400 # -1 # ID=1_67;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.525 1_100 - 518 ABC_tran PF00005.22 137 8.4e-05 16.0 0.0 1 1 8e-06 0.0003 14.2 0.0 12 37 226 251 217 288 0.81 # 87325 # 88878 # -1 # ID=1_100;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.469 1_88 - 383 ABC_tran PF00005.22 137 0.00013 15.4 0.0 1 1 6.5e-06 0.00024 14.5 0.0 16 35 162 181 152 211 0.87 # 75270 # 76418 # -1 # ID=1_88;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.516 1_66 - 260 ABC_tran PF00005.22 137 0.00016 15.0 0.3 1 1 3.6e-05 0.0013 12.1 0.0 8 30 99 121 93 136 0.86 # 52599 # 53378 # -1 # ID=1_66;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 1_67 - 341 HTH_22 PF13309.1 64 0.00073 12.4 0.0 1 1 1.3e-05 0.0015 11.4 0.0 46 64 21 39 10 39 0.89 # 53378 # 54400 # -1 # ID=1_67;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.525 1_38 - 228 TIGR00095 TIGR00095 194 0.00033 13.1 0.0 1 2 0.0015 0.16 4.3 0.0 124 138 20 34 7 79 0.74 # 27941 # 28624 # 1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.554 1_38 - 228 TIGR00095 TIGR00095 194 0.00033 13.1 0.0 2 2 0.00024 0.027 6.8 0.0 53 86 164 199 155 218 0.77 # 27941 # 28624 # 1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.554 1_67 - 341 HTH_AsnC-type PF13404.1 42 0.00063 12.4 0.0 1 1 1.5e-05 0.0017 11.0 0.0 18 36 18 36 15 40 0.91 # 53378 # 54400 # -1 # ID=1_67;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.525 1_67 - 341 rve_3 PF13683.1 67 0.00048 12.8 0.1 1 1 1.6e-05 0.0018 10.9 0.0 6 65 220 287 215 288 0.87 # 53378 # 54400 # -1 # ID=1_67;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.525 1_66 - 260 Sigma54_activat PF00158.21 168 0.00015 14.3 0.1 1 1 8.2e-06 0.00092 11.8 0.1 18 53 98 133 82 198 0.72 # 52599 # 53378 # -1 # ID=1_66;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 1_67 - 341 HTH_40 PF14493.1 91 0.0002 14.6 0.0 1 1 3.8e-06 0.00043 13.6 0.0 4 35 8 39 5 69 0.91 # 53378 # 54400 # -1 # ID=1_67;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.525 1_67 - 341 HTH_38 PF13936.1 44 1.4e-11 36.9 0.4 1 1 5.2e-13 5.8e-11 34.9 0.2 6 41 3 38 2 40 0.94 # 53378 # 54400 # -1 # ID=1_67;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.525 1_88 - 383 MobB PF03205.9 140 2.1e-05 17.3 0.0 1 2 0.017 1.9 1.3 0.0 14 60 61 108 61 127 0.88 # 75270 # 76418 # -1 # ID=1_88;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.516 1_88 - 383 MobB PF03205.9 140 2.1e-05 17.3 0.0 2 2 3.1e-06 0.00035 13.4 0.0 5 26 162 183 160 193 0.90 # 75270 # 76418 # -1 # ID=1_88;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.516 1_67 - 341 TetR_N PF00440.18 47 0.001 11.8 0.0 1 1 1.7e-05 0.0019 10.9 0.0 16 36 17 37 16 43 0.86 # 53378 # 54400 # -1 # ID=1_67;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.525 1_100 - 518 AAA_19 PF13245.1 76 0.00011 15.1 0.0 1 1 5.3e-06 0.0003 13.7 0.0 10 46 226 259 218 268 0.79 # 87325 # 88878 # -1 # ID=1_100;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.469 1_66 - 260 AAA_19 PF13245.1 76 0.00046 13.0 0.0 1 1 2.1e-05 0.0012 11.7 0.0 10 37 103 129 96 154 0.81 # 52599 # 53378 # -1 # ID=1_66;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 1_30 - 215 CbiA PF01656.18 195 1.4e-09 30.7 0.1 1 1 1.8e-11 2e-09 30.2 0.1 1 145 4 124 4 173 0.79 # 21436 # 22080 # 1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.426 1_38 - 228 MethyltransfD12 PF02086.10 260 0.00035 13.1 0.0 1 2 0.011 1.2 1.5 0.0 174 188 17 31 8 90 0.84 # 27941 # 28624 # 1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.554 1_38 - 228 MethyltransfD12 PF02086.10 260 0.00035 13.1 0.0 2 2 4e-05 0.0045 9.5 0.0 20 46 163 189 148 197 0.78 # 27941 # 28624 # 1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.554 1_112 - 96 Sigma70_r4_2 PF08281.7 54 5.5e-08 25.3 0.1 1 1 2.9e-09 1.6e-07 23.8 0.0 10 54 21 64 12 64 0.83 # 97999 # 98286 # -1 # ID=1_112;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.448 1_67 - 341 Sigma70_r4_2 PF08281.7 54 9.1e-08 24.6 0.0 1 1 3.7e-09 2.1e-07 23.4 0.0 25 48 16 39 12 40 0.94 # 53378 # 54400 # -1 # ID=1_67;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.525 1_67 - 341 rve PF00665.21 120 1.6e-22 72.9 0.0 1 1 2.8e-24 3.1e-22 72.0 0.0 3 118 118 242 117 244 0.96 # 53378 # 54400 # -1 # ID=1_67;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.525 1_50 - 392 zf-ribbon_3 PF13248.1 26 0.00081 11.7 3.8 1 2 0.0043 0.48 2.9 1.5 16 25 321 330 319 332 0.72 # 36553 # 37728 # 1 # ID=1_50;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.486 1_50 - 392 zf-ribbon_3 PF13248.1 26 0.00081 11.7 3.8 2 2 7.1e-05 0.0079 8.6 0.0 4 13 342 351 340 357 0.80 # 36553 # 37728 # 1 # ID=1_50;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.486 1_66 - 260 AFG1_ATPase PF03969.11 362 8.1e-05 14.6 0.2 1 1 2.8e-06 0.00031 12.6 0.2 63 216 103 254 43 259 0.72 # 52599 # 53378 # -1 # ID=1_66;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 1_67 - 341 Terminase_5 PF06056.7 58 0.0007 12.3 0.0 1 1 1.4e-05 0.0016 11.1 0.0 9 36 13 40 9 44 0.85 # 53378 # 54400 # -1 # ID=1_67;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.525 1_100 - 518 AAA_23 PF13476.1 202 0.00014 15.3 0.2 1 1 9.7e-06 0.00054 13.4 0.0 20 38 226 244 208 249 0.84 # 87325 # 88878 # -1 # ID=1_100;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.469 1_88 - 383 AAA_23 PF13476.1 202 0.00025 14.5 0.0 1 1 7.3e-06 0.00041 13.8 0.0 19 40 157 178 142 209 0.83 # 75270 # 76418 # -1 # ID=1_88;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.516 1_4 - 283 TIGR00573 TIGR00573 217 5.7e-16 51.4 0.0 1 1 8e-18 8.9e-16 50.7 0.0 12 181 107 274 103 281 0.84 # 2969 # 3817 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.562 1_38 - 228 Methyltransf_26 PF13659.1 117 2e-11 37.1 0.0 1 2 4.2e-07 4.8e-05 16.5 0.0 57 114 7 71 2 74 0.72 # 27941 # 28624 # 1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.554 1_38 - 228 Methyltransf_26 PF13659.1 117 2e-11 37.1 0.0 2 2 9.7e-08 1.1e-05 18.6 0.0 4 45 167 207 164 223 0.82 # 27941 # 28624 # 1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.554 1_100 - 518 AAA_30 PF13604.1 196 0.00036 13.2 0.0 1 1 5.8e-06 0.00065 12.4 0.0 4 44 211 251 209 276 0.84 # 87325 # 88878 # -1 # ID=1_100;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.469 1_112 - 96 GerE PF00196.14 58 1.6e-06 20.5 0.0 1 1 3.8e-08 2.1e-06 20.1 0.0 3 49 21 67 19 72 0.89 # 97999 # 98286 # -1 # ID=1_112;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.448 1_67 - 341 GerE PF00196.14 58 2.1e-06 20.1 0.0 1 1 7.1e-08 4e-06 19.2 0.0 17 39 16 38 8 40 0.89 # 53378 # 54400 # -1 # ID=1_67;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.525 1_61 - 764 TraG-D_C PF12696.2 128 6.1e-07 22.4 0.1 1 1 1.2e-08 1.4e-06 21.3 0.1 1 88 437 524 437 553 0.83 # 46890 # 49181 # -1 # ID=1_61;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.500 1_66 - 260 Bac_DnaA PF00308.13 219 1.2e-09 31.2 0.0 1 1 1.6e-11 1.8e-09 30.6 0.0 37 136 105 202 75 207 0.85 # 52599 # 53378 # -1 # ID=1_66;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 1_30 - 215 MipZ PF09140.6 261 2.7e-08 26.2 2.3 1 2 0.0008 0.09 4.8 0.5 7 25 8 26 2 38 0.71 # 21436 # 22080 # 1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.426 1_30 - 215 MipZ PF09140.6 261 2.7e-08 26.2 2.3 2 2 9e-09 1e-06 21.1 0.1 70 133 45 108 25 125 0.84 # 21436 # 22080 # 1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.426 1_38 - 228 UPF0020 PF01170.13 180 1.9e-05 17.3 0.0 1 2 0.00039 0.044 6.4 0.0 104 123 18 37 5 89 0.71 # 27941 # 28624 # 1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.554 1_38 - 228 UPF0020 PF01170.13 180 1.9e-05 17.3 0.0 2 2 6.2e-05 0.0069 9.0 0.0 28 54 163 189 158 221 0.67 # 27941 # 28624 # 1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.554 1_11 - 421 DDE_Tnp_1 PF01609.16 213 8.9e-35 113.2 0.2 1 1 1.7e-36 1.9e-34 112.1 0.0 6 213 128 362 123 362 0.96 # 7723 # 8985 # 1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.340 1_106 - 197 Trp_repressor PF01371.14 88 0.00045 13.2 0.0 1 1 6.1e-06 0.00069 12.6 0.0 1 40 102 141 102 145 0.95 # 93850 # 94440 # -1 # ID=1_106;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.372 1_67 - 341 Sigma70_r4 PF04545.11 50 0.00047 12.6 0.2 1 1 2e-05 0.0023 10.4 0.1 19 39 16 36 9 39 0.88 # 53378 # 54400 # -1 # ID=1_67;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.525 1_67 - 341 DUF2316 PF10078.4 89 0.00079 12.5 0.0 1 1 1.5e-05 0.0017 11.4 0.0 20 80 14 83 5 90 0.81 # 53378 # 54400 # -1 # ID=1_67;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.525 1_66 - 260 AAA PF00004.24 132 2.1e-07 24.3 0.0 1 1 6.3e-09 3.6e-07 23.5 0.0 1 74 105 180 105 214 0.77 # 52599 # 53378 # -1 # ID=1_66;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 1_100 - 518 AAA PF00004.24 132 0.00028 14.2 0.1 1 2 0.00065 0.037 7.3 0.0 1 21 228 248 228 278 0.83 # 87325 # 88878 # -1 # ID=1_100;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.469 1_100 - 518 AAA PF00004.24 132 0.00028 14.2 0.1 2 2 0.034 1.9 1.8 0.0 9 66 442 508 436 515 0.64 # 87325 # 88878 # -1 # ID=1_100;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.469 1_43 - 141 Rrf2 PF02082.15 83 0.00059 13.0 0.0 1 2 0.0023 0.25 4.6 0.0 28 51 33 56 28 57 0.90 # 31003 # 31425 # 1 # ID=1_43;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.565 1_43 - 141 Rrf2 PF02082.15 83 0.00059 13.0 0.0 2 2 0.00072 0.081 6.2 0.0 26 65 75 118 65 131 0.76 # 31003 # 31425 # 1 # ID=1_43;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.565 1_38 - 228 N6_N4_Mtase PF01555.13 231 8.6e-37 119.9 0.0 1 1 3.4e-36 3.8e-34 111.2 0.0 1 228 21 200 21 203 0.89 # 27941 # 28624 # 1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.554 1_32 - 327 Hydantoinase_A PF01968.13 290 7.9e-09 28.0 0.2 1 2 1.7e-06 0.00019 13.6 0.1 66 98 154 185 141 192 0.79 # 22889 # 23869 # 1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.440 1_32 - 327 Hydantoinase_A PF01968.13 290 7.9e-09 28.0 0.2 2 2 5.5e-06 0.00062 11.9 0.0 211 263 244 296 201 301 0.86 # 22889 # 23869 # 1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.440 1_66 - 260 AAA_16 PF13191.1 185 6.8e-05 16.0 1.0 1 1 9e-06 0.00034 13.7 0.1 16 41 97 119 84 146 0.78 # 52599 # 53378 # -1 # ID=1_66;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 1_100 - 518 AAA_16 PF13191.1 185 0.0001 15.4 0.0 1 1 9.6e-06 0.00036 13.6 0.0 8 51 213 252 212 301 0.78 # 87325 # 88878 # -1 # ID=1_100;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.469 1_88 - 383 AAA_16 PF13191.1 185 0.00033 13.7 0.0 1 1 1.8e-05 0.00069 12.7 0.0 27 52 160 188 148 282 0.82 # 75270 # 76418 # -1 # ID=1_88;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.516 1_66 - 260 AAA_22 PF13401.1 131 1.6e-06 21.3 0.2 1 2 6.7e-05 0.0025 11.0 0.0 5 21 103 119 99 131 0.83 # 52599 # 53378 # -1 # ID=1_66;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 1_66 - 260 AAA_22 PF13401.1 131 1.6e-06 21.3 0.2 2 2 0.0011 0.041 7.1 0.0 88 103 154 181 126 203 0.66 # 52599 # 53378 # -1 # ID=1_66;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 1_88 - 383 AAA_22 PF13401.1 131 1.1e-05 18.6 0.0 1 1 7.4e-07 2.7e-05 17.4 0.0 4 46 157 196 152 233 0.76 # 75270 # 76418 # -1 # ID=1_88;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.516 1_100 - 518 AAA_22 PF13401.1 131 0.0003 14.0 0.0 1 1 1.9e-05 0.00071 12.8 0.0 6 28 227 249 222 330 0.77 # 87325 # 88878 # -1 # ID=1_100;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.469 1_66 - 260 TIGR00362 TIGR00362 437 6.8e-11 34.5 0.0 1 1 7.1e-13 8e-11 34.3 0.0 139 240 104 203 28 210 0.86 # 52599 # 53378 # -1 # ID=1_66;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 1_57 - 283 Methyltransf_27 PF13708.1 194 2.5e-66 215.9 0.0 1 1 3.1e-68 3.4e-66 215.5 0.0 2 194 85 278 84 278 0.96 # 42308 # 43156 # 1 # ID=1_57;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.505 1_67 - 341 NUMOD1 PF07453.8 37 0.00028 13.8 0.1 1 1 4.9e-06 0.00054 12.9 0.1 20 37 21 38 19 38 0.91 # 53378 # 54400 # -1 # ID=1_67;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.525 1_100 - 518 AAA_29 PF13555.1 62 3.1e-05 16.5 0.0 1 1 1.7e-06 6.4e-05 15.6 0.0 21 40 224 242 217 254 0.83 # 87325 # 88878 # -1 # ID=1_100;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.469 1_88 - 383 AAA_29 PF13555.1 62 4.3e-05 16.1 0.0 1 1 3.4e-06 0.00013 14.6 0.0 26 44 160 178 151 186 0.83 # 75270 # 76418 # -1 # ID=1_88;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.516 1_66 - 260 AAA_29 PF13555.1 62 0.00083 12.0 0.0 1 1 4.3e-05 0.0016 11.1 0.0 19 59 98 139 89 141 0.72 # 52599 # 53378 # -1 # ID=1_66;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 1_66 - 260 AAA_28 PF13521.1 163 0.0012 11.9 1.6 1 2 0.061 6.8 -0.3 0.1 84 110 35 63 4 82 0.66 # 52599 # 53378 # -1 # ID=1_66;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 1_66 - 260 AAA_28 PF13521.1 163 0.0012 11.9 1.6 2 2 3e-05 0.0033 10.4 0.2 1 43 104 151 104 172 0.70 # 52599 # 53378 # -1 # ID=1_66;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 1_32 - 327 TIGR02350 TIGR02350 596 0.0001 13.5 0.6 1 3 0.083 9.3 -2.9 0.0 362 381 80 99 67 130 0.59 # 22889 # 23869 # 1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.440 1_32 - 327 TIGR02350 TIGR02350 596 0.0001 13.5 0.6 2 3 0.00011 0.012 6.7 0.0 175 200 159 181 142 198 0.82 # 22889 # 23869 # 1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.440 1_32 - 327 TIGR02350 TIGR02350 596 0.0001 13.5 0.6 3 3 0.00048 0.053 4.5 0.0 271 348 220 295 205 308 0.85 # 22889 # 23869 # 1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.440 1_4 - 283 RNase_H_2 PF13482.1 164 0.00015 14.7 0.0 1 1 9e-06 0.001 12.0 0.0 1 78 105 198 105 254 0.58 # 2969 # 3817 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.562 1_67 - 341 HTH_3 PF01381.17 55 1e-06 21.6 0.1 1 1 3.5e-08 2e-06 20.7 0.1 7 37 15 45 8 48 0.91 # 53378 # 54400 # -1 # ID=1_67;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.525 1_56 - 84 HTH_3 PF01381.17 55 4.4e-05 16.4 0.0 1 1 2e-06 0.00011 15.1 0.0 1 34 6 39 6 45 0.90 # 41477 # 41728 # -1 # ID=1_56;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.560 1_11 - 421 DDE_Tnp_1_4 PF13701.1 449 3.6e-27 87.6 3.5 1 2 0.0052 0.58 1.2 0.0 11 42 5 36 3 62 0.72 # 7723 # 8985 # 1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.340 1_11 - 421 DDE_Tnp_1_4 PF13701.1 449 3.6e-27 87.6 3.5 2 2 1.5e-28 1.6e-26 85.4 2.2 137 438 122 418 41 420 0.82 # 7723 # 8985 # 1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.340 1_67 - 341 HTH_23 PF13384.1 50 9.2e-09 27.9 0.0 1 1 1e-09 2.9e-08 26.3 0.0 9 40 9 40 2 43 0.89 # 53378 # 54400 # -1 # ID=1_67;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.525 1_47 - 653 HTH_23 PF13384.1 50 5e-06 19.2 0.0 1 1 3e-06 8.3e-05 15.3 0.0 13 40 149 176 143 180 0.91 # 33260 # 35218 # 1 # ID=1_47;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.594 1_112 - 96 HTH_23 PF13384.1 50 4.1e-05 16.3 0.0 1 1 2e-06 5.6e-05 15.9 0.0 12 41 31 60 24 73 0.76 # 97999 # 98286 # -1 # ID=1_112;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.448 1_56 - 84 HTH_23 PF13384.1 50 7.1e-05 15.5 0.2 1 1 1.4e-05 0.00039 13.2 0.1 17 33 14 30 6 38 0.86 # 41477 # 41728 # -1 # ID=1_56;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.560 1_19 - 116 zf-DHHC PF01529.15 174 0.0019 10.7 4.5 1 1 1.2e-05 0.0013 11.2 3.1 88 151 32 108 30 113 0.77 # 14094 # 14441 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.339 1_67 - 341 HTH_7 PF02796.10 45 2.9e-11 36.2 0.3 1 1 6.8e-13 7.6e-11 34.9 0.3 13 44 9 40 5 41 0.93 # 53378 # 54400 # -1 # ID=1_67;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.525 1_67 - 341 HTH_19 PF12844.2 64 1.7e-05 17.9 0.0 1 1 5.4e-07 3e-05 17.1 0.0 7 52 12 58 11 70 0.82 # 53378 # 54400 # -1 # ID=1_67;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.525 1_56 - 84 HTH_19 PF12844.2 64 9.6e-05 15.5 0.0 1 1 2.3e-06 0.00013 15.1 0.0 7 53 9 56 5 67 0.87 # 41477 # 41728 # -1 # ID=1_56;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.560 1_56 - 84 DUF1870 PF08965.5 118 0.00028 13.6 1.0 1 1 3e-06 0.00034 13.4 1.0 1 75 1 78 1 82 0.69 # 41477 # 41728 # -1 # ID=1_56;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.560 1_67 - 341 HTH_29 PF13551.1 112 2.8e-06 20.5 0.0 1 1 1.6e-07 8.9e-06 18.9 0.0 6 35 12 40 8 103 0.73 # 53378 # 54400 # -1 # ID=1_67;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.525 1_112 - 96 HTH_29 PF13551.1 112 0.00017 14.9 0.0 1 1 4.3e-06 0.00024 14.3 0.0 8 36 33 60 27 76 0.79 # 97999 # 98286 # -1 # ID=1_112;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.448 1_50 - 392 OrfB_Zn_ribbon PF07282.6 69 8.5e-29 92.2 0.3 1 1 1.8e-30 2e-28 91.0 0.3 1 69 293 363 293 363 0.98 # 36553 # 37728 # 1 # ID=1_50;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.486 1_4 - 283 DNA_pol_A_exo1 PF01612.15 176 1.5e-05 17.6 0.0 1 1 3.3e-07 3.6e-05 16.3 0.0 20 95 102 196 85 220 0.80 # 2969 # 3817 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.562 1_100 - 518 G-alpha PF00503.15 389 0.0007 11.3 0.0 1 2 0.054 6.1 -1.6 0.0 234 272 70 113 29 117 0.79 # 87325 # 88878 # -1 # ID=1_100;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.469 1_100 - 518 G-alpha PF00503.15 389 0.0007 11.3 0.0 2 2 1.9e-05 0.0021 9.8 0.0 58 87 225 254 214 325 0.84 # 87325 # 88878 # -1 # ID=1_100;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.469 1_55 - 94 UBA PF00627.26 37 0.00028 13.8 0.1 1 2 0.022 2.5 1.3 0.0 4 16 23 35 20 36 0.81 # 41165 # 41446 # 1 # ID=1_55;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.500 1_55 - 94 UBA PF00627.26 37 0.00028 13.8 0.1 2 2 2.9e-05 0.0033 10.4 0.0 5 22 60 77 58 77 0.86 # 41165 # 41446 # 1 # ID=1_55;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.500 1_83 - 231 OB_NTP_bind PF07717.11 114 0.00061 12.7 0.0 1 1 7.8e-06 0.00087 12.2 0.0 24 83 28 97 16 158 0.79 # 69506 # 70198 # -1 # ID=1_83;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.508 1_91 - 195 DNA_pol3_delta PF06144.8 172 2.2e-06 20.3 0.0 1 1 3e-08 3.4e-06 19.7 0.0 35 99 92 152 74 179 0.80 # 78083 # 78667 # -1 # ID=1_91;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.402 1_66 - 260 Arch_ATPase PF01637.13 234 0.001 11.8 0.1 1 2 3.4e-05 0.0039 9.9 0.0 8 37 90 119 87 140 0.79 # 52599 # 53378 # -1 # ID=1_66;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 1_66 - 260 Arch_ATPase PF01637.13 234 0.001 11.8 0.1 2 2 0.071 7.9 -0.9 0.0 121 150 167 192 144 203 0.68 # 52599 # 53378 # -1 # ID=1_66;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 1_66 - 260 PhoH PF02562.11 205 9.4e-08 24.5 0.2 1 2 0.064 7.2 -1.2 0.0 62 108 19 64 2 76 0.61 # 52599 # 53378 # -1 # ID=1_66;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 1_66 - 260 PhoH PF02562.11 205 9.4e-08 24.5 0.2 2 2 3.6e-09 4e-07 22.5 0.0 11 48 94 131 83 159 0.83 # 52599 # 53378 # -1 # ID=1_66;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 1_66 - 260 AAA_5 PF07728.9 139 3.3e-05 16.7 0.3 1 2 3.6e-06 0.00041 13.2 0.2 1 74 104 173 104 180 0.72 # 52599 # 53378 # -1 # ID=1_66;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 1_66 - 260 AAA_5 PF07728.9 139 3.3e-05 16.7 0.3 2 2 0.053 5.9 -0.3 0.0 90 123 225 258 218 259 0.63 # 52599 # 53378 # -1 # ID=1_66;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 1_66 - 260 ResIII PF04851.10 184 0.00042 13.2 0.0 1 2 6.9e-05 0.0078 9.1 0.0 8 50 89 127 50 135 0.78 # 52599 # 53378 # -1 # ID=1_66;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 1_66 - 260 ResIII PF04851.10 184 0.00042 13.2 0.0 2 2 0.0077 0.86 2.4 0.0 112 163 131 181 125 203 0.72 # 52599 # 53378 # -1 # ID=1_66;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 1_61 - 764 TrwB_AAD_bind PF10412.4 386 2.5e-06 19.3 0.2 1 2 9.3e-05 0.01 7.4 0.0 11 32 132 153 126 157 0.84 # 46890 # 49181 # -1 # ID=1_61;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.500 1_61 - 764 TrwB_AAD_bind PF10412.4 386 2.5e-06 19.3 0.2 2 2 3.1e-05 0.0035 9.0 0.1 247 332 440 525 427 542 0.88 # 46890 # 49181 # -1 # ID=1_61;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.500 1_30 - 215 TIGR01968 TIGR01968 261 8.7e-05 14.7 2.1 1 2 8.1e-06 0.00045 12.3 0.8 3 50 3 44 1 49 0.80 # 21436 # 22080 # 1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.426 1_30 - 215 TIGR01968 TIGR01968 261 8.7e-05 14.7 2.1 2 2 0.017 0.94 1.5 0.0 101 140 63 102 49 123 0.75 # 21436 # 22080 # 1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.426 1_32 - 327 TIGR01968 TIGR01968 261 0.00049 12.2 1.5 1 1 3.5e-05 0.002 10.2 1.4 46 128 63 155 60 215 0.74 # 22889 # 23869 # 1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.440 1_88 - 383 AAA_18 PF13238.1 129 1.7e-05 18.2 0.0 1 1 6e-07 3.4e-05 17.3 0.0 2 42 161 197 161 230 0.83 # 75270 # 76418 # -1 # ID=1_88;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.516 1_100 - 518 AAA_18 PF13238.1 129 0.00036 13.9 0.0 1 1 2.1e-05 0.0012 12.2 0.0 1 18 228 245 228 316 0.86 # 87325 # 88878 # -1 # ID=1_100;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.469 1_34 - 425 IMS_HHH PF11798.3 32 3.5e-08 26.3 0.2 1 1 9.1e-10 1e-07 24.9 0.2 3 32 172 201 170 201 0.93 # 24280 # 25554 # -1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.515 1_66 - 260 DUF258 PF03193.11 161 1.4e-05 17.4 0.0 1 1 2e-07 2.2e-05 16.8 0.0 21 78 88 157 70 192 0.71 # 52599 # 53378 # -1 # ID=1_66;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 1_4 - 283 TIGR01406 TIGR01406 231 4.3e-17 55.2 0.0 1 1 6.8e-19 7.6e-17 54.4 0.0 4 169 106 267 104 280 0.77 # 2969 # 3817 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.562 1_80 - 235 DUF3810 PF12725.2 318 0.00098 11.1 0.8 1 1 1.4e-05 0.0016 10.4 0.8 90 174 106 189 95 194 0.86 # 66516 # 67220 # -1 # ID=1_80;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.504 1_88 - 383 DUF87 PF01935.12 229 0.00069 12.5 0.0 1 1 1.1e-05 0.0013 11.7 0.0 28 56 162 191 161 192 0.88 # 75270 # 76418 # -1 # ID=1_88;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.516 1_67 - 341 HTH_28 PF13518.1 52 5.4e-08 25.9 0.1 1 1 2.4e-09 1.4e-07 24.6 0.1 7 34 12 39 8 40 0.89 # 53378 # 54400 # -1 # ID=1_67;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.525 1_112 - 96 HTH_28 PF13518.1 52 0.00016 14.7 0.0 1 1 8.7e-06 0.00049 13.2 0.0 9 38 33 62 26 75 0.86 # 97999 # 98286 # -1 # ID=1_112;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.448 1_67 - 341 HTH_24 PF13412.1 48 4.9e-07 22.2 0.1 1 1 7.8e-09 8.7e-07 21.4 0.1 10 40 11 40 10 43 0.89 # 53378 # 54400 # -1 # ID=1_67;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.525 1_67 - 341 HTH_30 PF13556.1 59 9.9e-05 15.0 0.0 1 1 1.9e-06 0.00022 13.9 0.0 10 34 15 39 10 43 0.86 # 53378 # 54400 # -1 # ID=1_67;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.525 1_4 - 283 TIGR01298 TIGR01298 200 4.6e-07 22.5 1.0 1 1 3.9e-08 4.4e-06 19.3 1.0 93 189 167 267 97 275 0.79 # 2969 # 3817 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.562 1_67 - 341 HTH_10 PF04967.7 53 0.00026 13.7 0.0 1 1 4.4e-06 0.00049 12.8 0.0 24 45 18 39 15 43 0.89 # 53378 # 54400 # -1 # ID=1_67;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.525 1_56 - 84 HTH_31 PF13560.1 64 6.5e-07 22.6 1.7 1 1 1.9e-08 1.1e-06 21.9 1.1 3 43 3 43 2 58 0.86 # 41477 # 41728 # -1 # ID=1_56;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.560 1_67 - 341 HTH_31 PF13560.1 64 3.1e-05 17.2 0.0 1 1 1.4e-06 7.7e-05 16.0 0.0 12 54 15 60 13 61 0.85 # 53378 # 54400 # -1 # ID=1_67;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.525 1_50 - 392 HTH_OrfB_IS605 PF12323.3 46 4.7e-21 67.0 0.2 1 1 1e-22 1.1e-20 65.8 0.2 1 45 1 45 1 46 0.98 # 36553 # 37728 # 1 # ID=1_50;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.486 1_100 - 518 T2SE PF00437.15 272 2.7e-41 134.3 0.1 1 1 9.6e-43 5.4e-41 133.3 0.0 10 271 97 373 90 374 0.85 # 87325 # 88878 # -1 # ID=1_100;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.469 1_88 - 383 T2SE PF00437.15 272 9e-36 116.2 0.0 1 1 2.4e-37 1.3e-35 115.6 0.0 120 269 149 306 127 309 0.88 # 75270 # 76418 # -1 # ID=1_88;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.516 1_32 - 327 StbA PF06406.6 318 1.4e-156 513.3 1.2 1 1 1.4e-158 1.6e-156 513.2 1.2 1 318 1 319 1 319 1.00 # 22889 # 23869 # 1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.440 1_88 - 383 AAA_17 PF13207.1 121 2.1e-05 18.4 0.1 1 2 4.7e-06 0.00026 14.9 0.0 3 47 161 208 161 251 0.76 # 75270 # 76418 # -1 # ID=1_88;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.516 1_88 - 383 AAA_17 PF13207.1 121 2.1e-05 18.4 0.1 2 2 0.086 4.8 1.1 0.1 24 113 332 363 274 374 0.60 # 75270 # 76418 # -1 # ID=1_88;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.516 1_100 - 518 AAA_17 PF13207.1 121 2.4e-05 18.2 0.2 1 1 2.1e-06 0.00012 16.0 0.0 1 24 227 255 227 345 0.72 # 87325 # 88878 # -1 # ID=1_100;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.469 1_3 - 94 TIGR02211 TIGR02211 221 0.00013 14.3 0.0 1 1 1.2e-06 0.00014 14.2 0.0 109 167 9 72 2 87 0.80 # 2648 # 2929 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.539 1_66 - 260 AAA_25 PF13481.1 194 2.8e-05 16.6 0.0 1 1 1.2e-06 4.6e-05 15.9 0.0 22 58 90 127 71 183 0.79 # 52599 # 53378 # -1 # ID=1_66;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 1_88 - 383 AAA_25 PF13481.1 194 0.00022 13.7 0.0 1 1 1.1e-05 0.00039 12.9 0.0 24 58 148 182 124 207 0.78 # 75270 # 76418 # -1 # ID=1_88;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.516 1_100 - 518 AAA_25 PF13481.1 194 0.00031 13.2 0.1 1 2 0.00013 0.0049 9.3 0.0 25 65 217 260 200 270 0.72 # 87325 # 88878 # -1 # ID=1_100;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.469 1_100 - 518 AAA_25 PF13481.1 194 0.00031 13.2 0.1 2 2 0.058 2.2 0.7 0.0 153 190 297 337 292 340 0.74 # 87325 # 88878 # -1 # ID=1_100;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.469 1_66 - 260 RuvB_N PF05496.7 234 0.00037 12.6 0.0 1 1 6.5e-06 0.00072 11.7 0.0 50 119 102 182 92 190 0.65 # 52599 # 53378 # -1 # ID=1_66;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 1_66 - 260 AAA_14 PF13173.1 128 1.3e-06 21.4 0.0 1 1 4.5e-08 2.5e-06 20.5 0.0 2 96 102 203 101 221 0.67 # 52599 # 53378 # -1 # ID=1_66;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 1_100 - 518 AAA_14 PF13173.1 128 0.00088 12.3 0.0 1 1 7.4e-05 0.0041 10.1 0.0 5 30 228 254 225 286 0.80 # 87325 # 88878 # -1 # ID=1_100;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.469 1_30 - 215 VirC1 PF07015.6 231 0.00046 12.4 0.0 1 2 0.00073 0.082 5.0 0.0 3 29 3 29 1 36 0.81 # 21436 # 22080 # 1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.426 1_30 - 215 VirC1 PF07015.6 231 0.00046 12.4 0.0 2 2 0.00052 0.058 5.5 0.0 87 190 77 181 59 194 0.70 # 21436 # 22080 # 1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.426 1_67 - 341 HTH_Tnp_ISL3 PF13542.1 52 2.3e-05 16.6 0.1 1 1 1.5e-06 8.7e-05 14.8 0.0 21 49 11 39 2 40 0.82 # 53378 # 54400 # -1 # ID=1_67;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.525 1_112 - 96 HTH_Tnp_ISL3 PF13542.1 52 6.8e-05 15.1 0.0 1 1 1.9e-06 0.00011 14.5 0.0 29 50 38 59 34 60 0.89 # 97999 # 98286 # -1 # ID=1_112;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.448 1_67 - 341 CENP-B_N PF04218.8 53 7.8e-05 15.2 0.1 1 1 1.3e-06 0.00015 14.3 0.1 20 47 15 42 2 43 0.83 # 53378 # 54400 # -1 # ID=1_67;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.525 1_88 - 383 RNA_helicase PF00910.17 107 0.00011 15.5 0.0 1 1 1.9e-06 0.00021 14.5 0.0 2 28 161 187 160 205 0.83 # 75270 # 76418 # -1 # ID=1_88;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.516 1_66 - 260 NTPase_1 PF03266.10 168 0.00026 13.8 0.1 1 2 0.0016 0.18 4.5 0.1 2 30 105 133 104 153 0.83 # 52599 # 53378 # -1 # ID=1_66;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 1_66 - 260 NTPase_1 PF03266.10 168 0.00026 13.8 0.1 2 2 0.00025 0.028 7.2 0.0 88 112 157 181 144 204 0.72 # 52599 # 53378 # -1 # ID=1_66;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 1_67 - 341 GcrA PF07750.6 162 0.00013 15.3 0.0 1 1 2.5e-06 0.00028 14.2 0.0 6 36 5 34 2 46 0.92 # 53378 # 54400 # -1 # ID=1_67;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.525 1_88 - 383 ATP_bind_1 PF03029.12 238 5.2e-05 15.9 0.0 1 1 7.2e-07 8.1e-05 15.3 0.0 1 23 162 184 162 197 0.86 # 75270 # 76418 # -1 # ID=1_88;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.516 1_67 - 341 HTH_26 PF13443.1 63 1.9e-06 21.1 0.0 1 1 3.4e-08 3.8e-06 20.2 0.0 4 41 11 48 10 58 0.90 # 53378 # 54400 # -1 # ID=1_67;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.525 1_100 - 518 DAP3 PF10236.4 309 0.0007 11.6 0.0 1 1 1.2e-05 0.0013 10.7 0.0 21 42 223 244 215 253 0.86 # 87325 # 88878 # -1 # ID=1_100;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.469 1_67 - 341 HTH_17 PF12728.2 51 0.0012 12.2 0.8 1 1 2.5e-05 0.0028 11.0 0.1 6 26 22 43 18 83 0.88 # 53378 # 54400 # -1 # ID=1_67;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.525 1_67 - 341 HTH_11 PF08279.7 55 1.6e-06 20.8 0.1 1 1 3.5e-08 4e-06 19.5 0.1 8 37 12 39 5 40 0.80 # 53378 # 54400 # -1 # ID=1_67;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.525 1_21 - 197 MarR_2 PF12802.2 62 0.00041 13.1 0.5 1 2 0.001 0.11 5.3 0.1 4 33 8 40 7 44 0.81 # 14925 # 15515 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.633 1_21 - 197 MarR_2 PF12802.2 62 0.00041 13.1 0.5 2 2 0.0012 0.14 5.0 0.0 41 57 54 70 48 73 0.84 # 14925 # 15515 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.633 1_67 - 341 TrmB PF01978.14 68 0.00028 13.7 0.0 1 1 5.6e-06 0.00063 12.5 0.0 16 44 11 39 10 40 0.93 # 53378 # 54400 # -1 # ID=1_67;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.525 1_4 - 283 RNase_T PF00929.19 164 3.5e-26 85.5 0.0 1 1 4e-28 4.5e-26 85.1 0.0 1 163 105 262 105 263 0.95 # 2969 # 3817 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.562 1_67 - 341 DUF1670 PF07900.6 220 0.0011 11.3 0.1 1 1 1.8e-05 0.002 10.4 0.1 189 219 9 39 4 40 0.92 # 53378 # 54400 # -1 # ID=1_67;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.525 1_75 - 1015 AAA_10 PF12846.2 304 8.2e-30 97.3 0.0 1 1 8.6e-31 1.9e-29 96.0 0.0 8 302 502 897 498 898 0.89 # 61364 # 64408 # -1 # ID=1_75;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.510 1_66 - 260 AAA_10 PF12846.2 304 8.4e-06 18.4 0.6 1 1 4.8e-06 0.00011 14.8 0.1 1 33 102 134 102 171 0.89 # 52599 # 53378 # -1 # ID=1_66;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 1_61 - 764 AAA_10 PF12846.2 304 2.8e-05 16.7 1.0 1 1 3.9e-06 8.8e-05 15.1 1.0 2 287 137 501 136 514 0.62 # 46890 # 49181 # -1 # ID=1_61;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.500 1_100 - 518 AAA_10 PF12846.2 304 0.00025 13.6 0.0 1 1 2.1e-05 0.00047 12.7 0.0 4 30 228 256 226 320 0.81 # 87325 # 88878 # -1 # ID=1_100;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.469 1_88 - 383 AAA_10 PF12846.2 304 0.00057 12.4 0.0 1 1 5e-05 0.0011 11.4 0.0 2 21 158 177 157 196 0.83 # 75270 # 76418 # -1 # ID=1_88;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.516 1_67 - 341 HTH_20 PF12840.2 61 0.00043 13.2 0.0 1 1 8.2e-06 0.00092 12.1 0.0 19 46 13 39 10 40 0.89 # 53378 # 54400 # -1 # ID=1_67;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.525 1_55 - 94 Yae1_N PF09811.4 39 9.5e-08 24.6 6.2 1 1 1.6e-09 1.8e-07 23.7 6.2 15 38 30 53 29 55 0.48 # 41165 # 41446 # 1 # ID=1_55;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.500 1_66 - 260 IstB_IS21 PF01695.12 178 5.1e-73 237.3 0.1 1 2 0.049 5.5 -0.6 0.0 64 97 25 57 24 61 0.64 # 52599 # 53378 # -1 # ID=1_66;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 1_66 - 260 IstB_IS21 PF01695.12 178 5.1e-73 237.3 0.1 2 2 9.8e-75 1.1e-72 236.2 0.1 1 178 56 235 56 235 0.98 # 52599 # 53378 # -1 # ID=1_66;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 1_45 - 176 SSB PF00436.20 104 6.8e-41 131.5 0.3 1 1 7.9e-43 8.9e-41 131.1 0.3 1 101 6 109 6 112 0.96 # 32383 # 32910 # 1 # ID=1_45;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.597 # # Program: hmmsearch # Version: 3.1b1 (May 2013) # Pipeline mode: SEARCH # Query file: /tmp/417c62f8-5f0c-4916-8f2c-d7a621be70fa # Target file: checkm_output/bins/pm241/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm241/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/417c62f8-5f0c-4916-8f2c-d7a621be70fa checkm_output/bins/pm241/genes.faa # Current dir: /mnt/data/azomer/reads-for-assembly/files/output/allcontigs/output_1512029421078392887 # Date: Thu Nov 30 10:00:45 2017 # [ok]