# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 2_2 - 332 ATP-synt_ab PF00006.20 215 0.00032 12.4 0.0 1 1 8.8e-06 0.00051 11.7 0.0 16 62 159 205 151 247 0.86 # 714 # 1709 # -1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.500 2_2 - 332 KaiC PF06745.8 227 9.9e-05 13.6 0.0 1 1 3e-06 0.00018 12.8 0.0 16 53 155 190 148 240 0.77 # 714 # 1709 # -1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.500 2_2 - 332 ABC_tran PF00005.22 137 9e-07 21.4 0.0 1 1 5e-08 1.4e-06 20.8 0.0 6 45 153 192 150 257 0.87 # 714 # 1709 # -1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.500 2_9 - 867 ABC_tran PF00005.22 137 0.00039 12.9 0.0 1 1 4.6e-05 0.0013 11.2 0.0 14 38 494 518 481 550 0.83 # 6745 # 9345 # -1 # ID=2_9;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.497 2_23 - 199 HTH_22 PF13309.1 64 3.3e-06 19.0 0.1 1 1 3.1e-07 9e-06 17.6 0.1 45 62 168 185 166 187 0.92 # 16675 # 17271 # 1 # ID=2_23;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.467 4_4 - 143 HTH_22 PF13309.1 64 9.9e-05 14.3 0.0 1 1 6.9e-06 0.0002 13.3 0.0 45 63 107 125 105 126 0.90 # 2395 # 2823 # -1 # ID=4_4;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.555 1_4 - 422 HHH_5 PF14520.1 60 1.6e-07 23.6 0.6 1 1 7.4e-08 4.3e-06 19.0 0.6 8 55 181 278 177 282 0.65 # 2749 # 4014 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.536 4_1 - 176 rve_3 PF13683.1 67 4e-05 15.3 0.0 1 1 1.6e-06 9.2e-05 14.1 0.0 2 32 142 172 141 175 0.88 # 1 # 528 # -1 # ID=4_1;partial=10;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.574 2_2 - 332 Sigma54_activat PF00158.21 168 5e-06 18.2 0.0 1 1 3.1e-07 9e-06 17.4 0.0 14 54 150 190 138 213 0.82 # 714 # 1709 # -1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.500 1_20 - 1079 Sigma54_activat PF00158.21 168 9.7e-05 14.0 0.4 1 1 9.5e-06 0.00027 12.5 0.4 8 130 480 600 473 606 0.79 # 14569 # 17805 # 1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.527 2_2 - 332 FtsK_SpoIIIE PF01580.13 205 5e-07 21.5 0.0 1 1 5.1e-08 9.9e-07 20.5 0.0 38 64 158 184 139 191 0.81 # 714 # 1709 # -1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.500 2_9 - 867 FtsK_SpoIIIE PF01580.13 205 6.8e-06 17.8 0.0 1 1 8.1e-07 1.6e-05 16.6 0.0 21 62 462 515 445 522 0.82 # 6745 # 9345 # -1 # ID=2_9;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.497 1_19 - 510 FtsK_SpoIIIE PF01580.13 205 0.00034 12.3 0.0 1 1 3e-05 0.00059 11.5 0.0 39 59 121 147 93 153 0.76 # 13040 # 14569 # 1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.439 2_23 - 199 SpoIIID PF12116.3 82 1.5e-05 17.0 0.1 1 2 0.01 0.59 2.3 0.0 33 55 8 30 5 44 0.87 # 16675 # 17271 # 1 # ID=2_23;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.467 2_23 - 199 SpoIIID PF12116.3 82 1.5e-05 17.0 0.1 2 2 8.2e-06 0.00048 12.2 0.0 17 42 163 188 151 197 0.84 # 16675 # 17271 # 1 # ID=2_23;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.467 2_2 - 332 MobB PF03205.9 140 5.1e-06 18.4 1.9 1 1 1.5e-07 8.7e-06 17.6 0.3 2 39 160 196 159 201 0.83 # 714 # 1709 # -1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.500 4_4 - 143 HTH_8 PF02954.14 42 4.1e-06 18.5 1.0 1 2 0.0069 0.4 2.5 0.3 2 11 56 65 55 66 0.86 # 2395 # 2823 # -1 # ID=4_4;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.555 4_4 - 143 HTH_8 PF02954.14 42 4.1e-06 18.5 1.0 2 2 1.3e-06 7.6e-05 14.4 0.0 21 37 107 123 95 126 0.81 # 2395 # 2823 # -1 # ID=4_4;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.555 2_2 - 332 Myosin_head PF00063.16 689 9.1e-05 12.7 0.0 1 1 2.2e-06 0.00013 12.2 0.0 84 110 157 183 147 209 0.90 # 714 # 1709 # -1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.500 1_28 - 226 TetR_N PF00440.18 47 2e-20 64.4 0.1 1 2 2.1e-20 4e-19 60.2 0.0 2 47 19 64 18 64 0.97 # 25251 # 25928 # 1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.627 1_28 - 226 TetR_N PF00440.18 47 2e-20 64.4 0.1 2 2 0.038 0.73 1.8 0.1 1 16 179 194 179 196 0.91 # 25251 # 25928 # 1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.627 2_23 - 199 TetR_N PF00440.18 47 0.00015 13.5 0.0 1 1 1.6e-05 0.00031 12.6 0.0 17 36 166 185 164 185 0.94 # 16675 # 17271 # 1 # ID=2_23;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.467 4_4 - 143 TetR_N PF00440.18 47 0.0002 13.2 0.0 1 1 2.5e-05 0.00048 12.0 0.0 15 36 103 124 96 124 0.89 # 2395 # 2823 # -1 # ID=4_4;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.555 2_2 - 332 AAA_19 PF13245.1 76 0.00037 12.4 0.1 1 1 2.8e-05 0.00081 11.3 0.1 5 48 153 191 149 224 0.78 # 714 # 1709 # -1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.500 1_20 - 1079 AAA_19 PF13245.1 76 0.0014 10.6 3.7 1 2 0.00056 0.016 7.2 0.2 2 75 485 551 484 552 0.75 # 14569 # 17805 # 1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.527 1_20 - 1079 AAA_19 PF13245.1 76 0.0014 10.6 3.7 2 2 0.027 0.79 1.7 0.0 17 32 706 721 705 731 0.82 # 14569 # 17805 # 1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.527 1_16 - 239 CbiA PF01656.18 195 1.6e-06 19.8 0.7 1 2 0.00041 0.024 6.1 0.1 1 19 3 21 3 24 0.89 # 10965 # 11681 # -1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.416 1_16 - 239 CbiA PF01656.18 195 1.6e-06 19.8 0.7 2 2 6.6e-06 0.00038 12.0 0.0 110 165 89 142 33 168 0.77 # 10965 # 11681 # -1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.416 1_1 - 240 Rep_3 PF01051.16 222 6.5e-44 142.2 0.4 1 1 1.3e-45 7.5e-44 142.0 0.4 2 213 8 227 7 233 0.92 # 172 # 891 # -1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.440 4_1 - 176 rve PF00665.21 120 1e-13 43.6 0.0 1 1 3.1e-14 1.8e-12 39.6 0.0 4 119 67 169 64 170 0.93 # 1 # 528 # -1 # ID=4_1;partial=10;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.574 2_2 - 332 AAA_23 PF13476.1 202 0.00026 13.5 0.0 1 1 1.4e-05 0.00042 12.8 0.0 19 39 158 178 105 184 0.91 # 714 # 1709 # -1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.500 2_9 - 867 AAA_23 PF13476.1 202 0.0028 10.1 0.0 1 1 9.5e-05 0.0028 10.1 0.0 22 39 494 511 464 521 0.84 # 6745 # 9345 # -1 # ID=2_9;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.497 2_2 - 332 Zeta_toxin PF06414.7 201 9e-07 20.3 0.0 1 1 2.7e-08 1.6e-06 19.5 0.0 12 51 154 193 145 204 0.86 # 714 # 1709 # -1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.500 1_20 - 1079 AAA_30 PF13604.1 196 1.2e-53 173.7 7.6 1 1 1.5e-54 4.5e-53 171.9 6.4 1 192 477 660 477 663 0.97 # 14569 # 17805 # 1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.527 2_2 - 332 AAA_30 PF13604.1 196 8.8e-05 14.3 0.1 1 2 4.7e-05 0.0014 10.4 0.1 11 51 151 190 145 197 0.80 # 714 # 1709 # -1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.500 2_2 - 332 AAA_30 PF13604.1 196 8.8e-05 14.3 0.1 2 2 0.024 0.68 1.6 0.0 121 178 204 258 191 272 0.77 # 714 # 1709 # -1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.500 4_2 - 64 HTH_Tnp_1 PF01527.15 76 5.6e-18 56.9 0.1 1 1 2.2e-19 6.5e-18 56.7 0.1 2 47 18 63 17 63 0.97 # 861 # 1052 # -1 # ID=4_2;partial=00;start_type=ATG;rbs_motif=4Base/6BMM;rbs_spacer=13-15bp;gc_cont=0.479 4_4 - 143 HTH_Tnp_1 PF01527.15 76 0.00017 13.7 0.0 1 1 1e-05 0.00029 12.9 0.0 20 50 101 130 89 140 0.75 # 2395 # 2823 # -1 # ID=4_4;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.555 1_19 - 510 TraG-D_C PF12696.2 128 8e-22 69.6 0.0 1 1 2.2e-23 1.3e-21 69.0 0.0 1 127 350 471 350 472 0.80 # 13040 # 14569 # 1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.439 2_23 - 199 Sigma70_r4 PF04545.11 50 0.0003 12.3 0.0 1 1 1.8e-05 0.001 10.5 0.0 19 37 164 182 154 189 0.88 # 16675 # 17271 # 1 # ID=2_23;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.467 1_20 - 1079 AAA PF00004.24 132 1.9e-06 20.2 0.9 1 1 1.3e-07 7.5e-06 18.3 0.1 4 111 500 600 497 612 0.73 # 14569 # 17805 # 1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.527 2_2 - 332 Parvo_NS1 PF01057.12 272 0.0005 11.1 0.0 1 1 1.4e-05 0.00083 10.4 0.0 104 138 148 182 140 188 0.90 # 714 # 1709 # -1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.500 1_20 - 1079 Herpes_Helicase PF02689.9 819 1.2e-05 15.3 0.0 1 2 0.0014 0.08 2.7 0.0 173 208 539 574 515 584 0.81 # 14569 # 17805 # 1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.527 1_20 - 1079 Herpes_Helicase PF02689.9 819 1.2e-05 15.3 0.0 2 2 9.3e-06 0.00054 9.9 0.0 739 782 850 894 831 914 0.80 # 14569 # 17805 # 1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.527 1_27 - 400 TIGR01394 TIGR01394 594 0.00087 9.3 0.0 1 1 2.2e-05 0.0013 8.8 0.0 408 486 267 343 261 354 0.84 # 23973 # 25172 # -1 # ID=1_27;partial=00;start_type=GTG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.636 2_23 - 199 MRP-L20 PF12824.2 164 1.2e-06 20.7 0.0 1 1 2.9e-08 1.7e-06 20.2 0.0 69 133 132 194 116 198 0.77 # 16675 # 17271 # 1 # ID=2_23;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.467 1_20 - 1079 Torsin PF06309.6 127 1.2e-05 17.3 0.0 1 1 6.1e-07 3.6e-05 15.8 0.0 19 85 460 526 452 537 0.83 # 14569 # 17805 # 1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.527 2_23 - 199 MerR_1 PF13411.1 69 5.5e-06 18.3 0.1 1 2 0.015 0.43 2.6 0.0 45 66 78 99 75 102 0.83 # 16675 # 17271 # 1 # ID=2_23;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.467 2_23 - 199 MerR_1 PF13411.1 69 5.5e-06 18.3 0.1 2 2 8.8e-06 0.00025 13.0 0.0 1 29 166 194 166 198 0.88 # 16675 # 17271 # 1 # ID=2_23;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.467 4_2 - 64 MerR_1 PF13411.1 69 0.00019 13.4 0.0 1 1 1.1e-05 0.00031 12.7 0.0 1 23 40 62 40 63 0.95 # 861 # 1052 # -1 # ID=4_2;partial=00;start_type=ATG;rbs_motif=4Base/6BMM;rbs_spacer=13-15bp;gc_cont=0.479 2_2 - 332 cobW PF02492.14 178 1.3e-06 20.1 0.0 1 1 4.1e-08 2.4e-06 19.2 0.0 3 45 161 202 159 257 0.77 # 714 # 1709 # -1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.500 2_2 - 332 AAA_16 PF13191.1 185 3.9e-07 22.3 0.0 1 1 3.4e-08 9.9e-07 21.0 0.0 24 61 158 195 149 274 0.82 # 714 # 1709 # -1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.500 2_9 - 867 AAA_16 PF13191.1 185 0.00056 12.0 0.0 1 1 0.00018 0.0052 8.9 0.0 25 47 492 514 481 574 0.85 # 6745 # 9345 # -1 # ID=2_9;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.497 2_2 - 332 AAA_22 PF13401.1 131 1.6e-07 23.7 0.0 1 1 1.8e-08 3.5e-07 22.6 0.0 3 54 157 202 153 241 0.74 # 714 # 1709 # -1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.500 2_9 - 867 AAA_22 PF13401.1 131 6.2e-05 15.3 0.0 1 1 7.5e-05 0.0015 10.9 0.0 5 28 492 515 489 549 0.85 # 6745 # 9345 # -1 # ID=2_9;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.497 1_20 - 1079 AAA_22 PF13401.1 131 0.00037 12.8 0.2 1 1 0.00022 0.0043 9.3 0.2 4 125 494 598 490 603 0.81 # 14569 # 17805 # 1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.527 2_2 - 332 AAA_29 PF13555.1 62 0.00058 11.6 0.0 1 1 2.3e-05 0.0014 10.4 0.0 19 43 157 178 145 188 0.75 # 714 # 1709 # -1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.500 2_23 - 199 HTH_32 PF13565.1 77 1.5e-05 17.9 0.2 1 2 0.097 5.6 0.1 0.0 24 53 36 70 18 83 0.65 # 16675 # 17271 # 1 # ID=2_23;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.467 2_23 - 199 HTH_32 PF13565.1 77 1.5e-05 17.9 0.2 2 2 1.5e-06 8.8e-05 15.5 0.1 7 76 127 185 121 186 0.71 # 16675 # 17271 # 1 # ID=2_23;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.467 4_2 - 64 HTH_23 PF13384.1 50 5.8e-09 27.6 0.0 1 1 5.3e-10 7.6e-09 27.2 0.0 3 41 24 63 22 63 0.96 # 861 # 1052 # -1 # ID=4_2;partial=00;start_type=ATG;rbs_motif=4Base/6BMM;rbs_spacer=13-15bp;gc_cont=0.479 2_23 - 199 HTH_23 PF13384.1 50 3.3e-06 18.9 0.0 1 1 9.1e-07 1.3e-05 16.9 0.0 10 37 158 185 150 188 0.82 # 16675 # 17271 # 1 # ID=2_23;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.467 4_4 - 143 HTH_23 PF13384.1 50 5.2e-05 15.1 0.0 1 1 6.8e-06 9.8e-05 14.2 0.0 4 38 91 125 88 137 0.83 # 2395 # 2823 # -1 # ID=4_4;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.555 1_28 - 226 HTH_23 PF13384.1 50 0.00052 11.9 0.2 1 1 0.00019 0.0028 9.5 0.0 10 35 22 51 14 64 0.75 # 25251 # 25928 # 1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.627 2_23 - 199 HTH_7 PF02796.10 45 3.4e-18 57.5 0.1 1 1 4.2e-19 1.2e-17 55.7 0.0 1 44 144 188 144 189 0.98 # 16675 # 17271 # 1 # ID=2_23;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.467 4_4 - 143 HTH_7 PF02796.10 45 7.4e-07 21.2 0.1 1 1 6.5e-08 1.9e-06 19.9 0.1 19 40 102 123 83 128 0.71 # 2395 # 2823 # -1 # ID=4_4;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.555 4_4 - 143 HTH_29 PF13551.1 112 7.7e-06 18.2 1.2 1 2 0.0084 0.16 4.3 0.2 36 61 67 91 60 102 0.78 # 2395 # 2823 # -1 # ID=4_4;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.555 4_4 - 143 HTH_29 PF13551.1 112 7.7e-06 18.2 1.2 2 2 1.7e-05 0.00033 13.0 0.0 10 42 100 134 92 142 0.72 # 2395 # 2823 # -1 # ID=4_4;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.555 4_2 - 64 HTH_29 PF13551.1 112 0.00018 13.8 0.3 1 2 0.074 1.4 1.3 0.1 52 68 18 33 3 38 0.60 # 861 # 1052 # -1 # ID=4_2;partial=00;start_type=ATG;rbs_motif=4Base/6BMM;rbs_spacer=13-15bp;gc_cont=0.479 4_2 - 64 HTH_29 PF13551.1 112 0.00018 13.8 0.3 2 2 3.2e-05 0.00061 12.1 0.0 8 36 36 63 28 63 0.84 # 861 # 1052 # -1 # ID=4_2;partial=00;start_type=ATG;rbs_motif=4Base/6BMM;rbs_spacer=13-15bp;gc_cont=0.479 2_23 - 199 HTH_29 PF13551.1 112 0.00026 13.3 2.2 1 1 0.00034 0.0065 8.8 0.0 5 33 159 186 155 192 0.80 # 16675 # 17271 # 1 # ID=2_23;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.467 2_2 - 332 Arch_ATPase PF01637.13 234 5.1e-06 18.4 0.0 1 1 1.6e-07 9.4e-06 17.6 0.0 15 68 155 205 149 226 0.87 # 714 # 1709 # -1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.500 1_20 - 1079 PhoH PF02562.11 205 1.9e-09 29.2 4.8 1 2 9.6e-07 2.8e-05 15.5 0.4 5 39 478 514 475 536 0.80 # 14569 # 17805 # 1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.527 1_20 - 1079 PhoH PF02562.11 205 1.9e-09 29.2 4.8 2 2 3e-06 8.8e-05 13.9 0.1 120 162 562 605 553 635 0.82 # 14569 # 17805 # 1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.527 2_2 - 332 PhoH PF02562.11 205 0.00018 12.9 0.0 1 1 1.1e-05 0.00033 12.1 0.0 14 45 153 184 143 210 0.79 # 714 # 1709 # -1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.500 1_3 - 264 SprT-like PF10263.4 157 2.2e-37 120.2 0.0 1 1 5.3e-39 3.1e-37 119.8 0.0 1 150 12 236 12 262 0.92 # 1807 # 2598 # -1 # ID=1_3;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.524 2_2 - 332 ResIII PF04851.10 184 3.6e-06 19.0 0.0 1 1 9.8e-08 5.7e-06 18.4 0.0 22 61 148 196 104 202 0.81 # 714 # 1709 # -1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.500 1_19 - 510 TrwB_AAD_bind PF10412.4 386 6.1e-119 389.1 0.0 1 1 3.7e-120 7.2e-119 388.9 0.0 1 385 112 490 112 491 0.95 # 13040 # 14569 # 1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.439 2_9 - 867 TrwB_AAD_bind PF10412.4 386 5.3e-07 20.6 1.6 1 2 1.5e-06 2.9e-05 14.9 0.0 16 51 492 527 484 536 0.92 # 6745 # 9345 # -1 # ID=2_9;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.497 2_9 - 867 TrwB_AAD_bind PF10412.4 386 5.3e-07 20.6 1.6 2 2 0.0042 0.082 3.5 0.0 102 168 741 806 720 812 0.79 # 6745 # 9345 # -1 # ID=2_9;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.497 2_2 - 332 TrwB_AAD_bind PF10412.4 386 7.9e-06 16.8 0.1 1 1 6.4e-07 1.2e-05 16.1 0.1 14 49 157 191 150 202 0.81 # 714 # 1709 # -1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.500 2_2 - 332 AAA_18 PF13238.1 129 2.7e-06 19.9 0.0 1 1 2e-07 5.7e-06 18.8 0.0 1 29 161 194 161 213 0.77 # 714 # 1709 # -1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.500 1_19 - 510 AAA_18 PF13238.1 129 7.4e-05 15.2 0.0 1 1 5.2e-06 0.00015 14.2 0.0 3 21 131 149 130 238 0.78 # 13040 # 14569 # 1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.439 1_4 - 422 IMS_HHH PF11798.3 32 2.7e-07 22.6 0.0 1 1 1.4e-08 7.9e-07 21.2 0.0 4 32 171 199 168 199 0.85 # 2749 # 4014 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.536 2_2 - 332 GvpD PF07088.6 484 1.5e-06 18.9 0.0 1 1 3.9e-08 2.2e-06 18.3 0.0 10 89 158 241 150 262 0.76 # 714 # 1709 # -1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.500 2_2 - 332 DUF258 PF03193.11 161 6.4e-05 14.3 0.0 1 1 2e-06 0.00012 13.5 0.0 29 61 151 184 129 224 0.81 # 714 # 1709 # -1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.500 1_19 - 510 DUF87 PF01935.12 229 6.5e-08 24.8 0.0 1 1 3.5e-09 1e-07 24.1 0.0 10 68 116 170 110 262 0.85 # 13040 # 14569 # 1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.439 2_2 - 332 DUF87 PF01935.12 229 1.5e-06 20.3 0.0 1 1 9.7e-08 2.8e-06 19.4 0.0 9 61 144 195 138 196 0.78 # 714 # 1709 # -1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.500 4_2 - 64 HTH_28 PF13518.1 52 5.3e-08 25.0 1.1 1 1 2.9e-09 5.6e-08 24.9 0.0 1 36 27 63 27 63 0.97 # 861 # 1052 # -1 # ID=4_2;partial=00;start_type=ATG;rbs_motif=4Base/6BMM;rbs_spacer=13-15bp;gc_cont=0.479 2_23 - 199 HTH_28 PF13518.1 52 2.2e-05 16.6 0.0 1 1 6.7e-06 0.00013 14.1 0.0 13 32 166 185 158 191 0.87 # 16675 # 17271 # 1 # ID=2_23;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.467 4_4 - 143 HTH_28 PF13518.1 52 0.00012 14.2 0.0 1 1 1.6e-05 0.00031 13.0 0.0 13 33 105 125 93 126 0.72 # 2395 # 2823 # -1 # ID=4_4;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.555 1_28 - 226 HTH_Tnp_1_2 PF13022.1 142 0.00046 12.1 0.0 1 1 1.2e-05 0.00067 11.6 0.0 22 77 24 73 5 79 0.76 # 25251 # 25928 # 1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.627 2_23 - 199 HTH_24 PF13412.1 48 2.5e-05 15.8 0.0 1 2 0.032 1.8 0.2 0.0 30 46 74 90 69 104 0.81 # 16675 # 17271 # 1 # ID=2_23;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.467 2_23 - 199 HTH_24 PF13412.1 48 2.5e-05 15.8 0.0 2 2 4.4e-06 0.00026 12.6 0.0 10 38 158 186 157 188 0.92 # 16675 # 17271 # 1 # ID=2_23;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.467 2_2 - 332 Sigma54_activ_2 PF14532.1 138 1.4e-06 20.6 0.0 1 1 5e-08 2.9e-06 19.5 0.0 14 65 151 202 145 212 0.92 # 714 # 1709 # -1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.500 2_2 - 332 MMR_HSR1 PF01926.18 116 0.00025 13.2 0.0 1 1 7.1e-06 0.00041 12.5 0.0 2 41 161 205 160 310 0.84 # 714 # 1709 # -1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.500 2_2 - 332 DEAD PF00270.24 169 1.7e-06 19.7 0.0 1 1 5.7e-08 3.3e-06 18.8 0.0 13 70 157 211 144 242 0.78 # 714 # 1709 # -1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.500 3_3 - 465 UPF0236 PF06782.6 470 9e-07 19.7 0.7 1 1 6.3e-08 3.7e-06 17.7 0.4 334 406 365 442 258 449 0.70 # 1428 # 2822 # 1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.515 2_2 - 332 DUF2075 PF09848.4 352 5.3e-05 14.4 0.0 1 1 1.3e-06 7.5e-05 13.9 0.0 1 32 158 187 158 216 0.76 # 714 # 1709 # -1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.500 1_20 - 1079 UvrD_C_2 PF13538.1 104 1.5e-16 52.6 0.1 1 1 1e-17 6.1e-16 50.7 0.1 2 102 797 896 796 898 0.76 # 14569 # 17805 # 1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.527 2_2 - 332 T2SE PF00437.15 272 1.8e-52 170.0 0.1 1 1 7.4e-54 2.1e-52 169.7 0.1 3 271 10 311 8 312 0.94 # 714 # 1709 # -1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.500 1_19 - 510 T2SE PF00437.15 272 0.00052 11.1 0.1 1 1 3.1e-05 0.00091 10.3 0.1 130 149 128 147 106 160 0.84 # 13040 # 14569 # 1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.439 2_2 - 332 NACHT PF05729.7 166 5.2e-05 15.1 0.0 1 1 1.9e-06 0.00011 14.0 0.0 1 27 159 185 159 188 0.90 # 714 # 1709 # -1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.500 2_2 - 332 UPF0079 PF02367.12 123 3.5e-06 18.8 0.0 1 1 1.2e-07 7.1e-06 17.8 0.0 9 45 152 188 145 193 0.85 # 714 # 1709 # -1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.500 1_19 - 510 AAA_17 PF13207.1 121 0.00012 15.0 0.1 1 1 6.7e-05 0.0013 11.7 0.0 4 42 131 191 129 260 0.58 # 13040 # 14569 # 1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.439 2_2 - 332 AAA_17 PF13207.1 121 0.00023 14.1 0.1 1 1 2.8e-05 0.00055 12.9 0.1 2 40 161 195 160 229 0.75 # 714 # 1709 # -1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.500 2_9 - 867 AAA_17 PF13207.1 121 0.00054 12.9 4.9 1 1 0.00023 0.0044 10.0 0.0 3 21 495 513 494 565 0.80 # 6745 # 9345 # -1 # ID=2_9;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.497 2_2 - 332 AAA_7 PF12775.2 272 5.7e-05 14.4 0.0 1 1 2.3e-06 0.00014 13.2 0.0 25 64 150 189 139 209 0.86 # 714 # 1709 # -1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.500 2_2 - 332 TIGR03346 TIGR03346 853 8.5e-05 12.8 0.0 1 1 2e-06 0.00012 12.3 0.0 598 641 161 204 149 238 0.89 # 714 # 1709 # -1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.500 1_20 - 1079 Viral_helicase1 PF01443.13 234 4e-15 48.0 5.4 1 2 2.3e-08 1.3e-06 20.2 0.0 3 104 499 605 497 654 0.74 # 14569 # 17805 # 1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.527 1_20 - 1079 Viral_helicase1 PF01443.13 234 4e-15 48.0 5.4 2 2 3e-11 1.8e-09 29.6 0.5 157 234 818 899 774 899 0.74 # 14569 # 17805 # 1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.527 2_2 - 332 Pox_A32 PF04665.7 241 5.8e-05 14.6 0.0 1 1 1.7e-06 9.9e-05 13.8 0.0 12 46 157 191 150 210 0.85 # 714 # 1709 # -1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.500 1_19 - 510 AAA_14 PF13173.1 128 7.2e-06 18.1 0.0 1 2 4.3e-06 0.00012 14.1 0.0 6 89 130 213 125 234 0.76 # 13040 # 14569 # 1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.439 1_19 - 510 AAA_14 PF13173.1 128 7.2e-06 18.1 0.0 2 2 0.043 1.3 1.1 0.0 53 81 340 372 300 391 0.57 # 13040 # 14569 # 1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.439 2_2 - 332 AAA_14 PF13173.1 128 0.00016 13.7 0.1 1 2 0.0044 0.13 4.3 0.0 64 96 135 165 98 166 0.69 # 714 # 1709 # -1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.500 2_2 - 332 AAA_14 PF13173.1 128 0.00016 13.7 0.1 2 2 6.3e-05 0.0018 10.3 0.0 2 35 158 191 157 213 0.80 # 714 # 1709 # -1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.500 4_4 - 143 Mga PF05043.8 87 1.3e-05 17.6 0.0 1 1 3.1e-07 1.8e-05 17.1 0.0 18 56 92 130 54 141 0.86 # 2395 # 2823 # -1 # ID=4_4;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.555 4_2 - 64 HTH_Tnp_ISL3 PF13542.1 52 0.00023 12.5 0.0 1 1 5.5e-06 0.00032 12.1 0.0 8 42 19 54 18 56 0.83 # 861 # 1052 # -1 # ID=4_2;partial=00;start_type=ATG;rbs_motif=4Base/6BMM;rbs_spacer=13-15bp;gc_cont=0.479 2_2 - 332 AAA_33 PF13671.1 143 0.00021 13.3 0.0 1 1 5.9e-06 0.00034 12.6 0.0 2 26 161 188 160 256 0.81 # 714 # 1709 # -1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.500 4_2 - 64 CENP-B_N PF04218.8 53 2.1e-07 22.5 0.2 1 1 5.1e-09 3e-07 22.0 0.2 4 44 20 61 18 62 0.86 # 861 # 1052 # -1 # ID=4_2;partial=00;start_type=ATG;rbs_motif=4Base/6BMM;rbs_spacer=13-15bp;gc_cont=0.479 1_19 - 510 T4SS-DNA_transf PF02534.9 469 3.1e-12 37.8 0.0 1 1 7.9e-14 4.6e-12 37.3 0.0 263 426 313 472 297 500 0.74 # 13040 # 14569 # 1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.439 2_2 - 332 RNA_helicase PF00910.17 107 1.1e-05 17.7 0.1 1 2 3.5e-06 0.0002 13.7 0.0 1 25 161 185 161 242 0.75 # 714 # 1709 # -1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.500 2_2 - 332 RNA_helicase PF00910.17 107 1.1e-05 17.7 0.1 2 2 0.027 1.6 1.2 0.1 69 100 290 322 281 328 0.78 # 714 # 1709 # -1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.500 2_2 - 332 AAA_2 PF07724.9 171 3.3e-06 19.2 0.0 1 1 1e-07 6e-06 18.4 0.0 3 54 158 204 156 216 0.89 # 714 # 1709 # -1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.500 2_21 - 478 DNA_methylase PF00145.12 335 1.2e-79 259.9 0.0 1 1 4.4e-81 2.6e-79 258.8 0.0 1 331 96 457 96 460 0.86 # 13755 # 15188 # 1 # ID=2_21;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=3-4bp;gc_cont=0.480 2_20 - 89 DDE_Tnp_IS1 PF03400.8 131 2.3e-47 152.5 0.4 1 1 4.2e-49 2.5e-47 152.4 0.4 44 131 1 88 1 88 0.99 # 13389 # 13655 # -1 # ID=2_20;partial=00;start_type=TTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.521 4_4 - 143 HTH_26 PF13443.1 63 6.3e-05 15.3 0.0 1 1 2.2e-06 0.00013 14.3 0.0 1 31 92 125 92 134 0.88 # 2395 # 2823 # -1 # ID=4_4;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.555 2_23 - 199 HTH_17 PF12728.2 51 1.1e-05 17.8 0.0 1 1 8.5e-07 2.5e-05 16.7 0.0 2 27 166 191 165 196 0.90 # 16675 # 17271 # 1 # ID=2_23;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.467 4_4 - 143 HTH_17 PF12728.2 51 0.00046 12.6 0.0 1 1 8.8e-05 0.0025 10.2 0.0 7 23 110 126 106 139 0.81 # 2395 # 2823 # -1 # ID=4_4;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.555 1_17 - 140 RuvA_C PF07499.8 47 0.00095 11.5 0.8 1 2 0.01 0.6 2.6 0.3 39 46 6 13 5 14 0.92 # 11690 # 12109 # -1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.429 1_17 - 140 RuvA_C PF07499.8 47 0.00095 11.5 0.8 2 2 0.00038 0.022 7.2 0.0 11 25 21 35 21 36 0.92 # 11690 # 12109 # -1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.429 2_23 - 199 HTH_11 PF08279.7 55 6.7e-07 21.1 0.0 1 1 1.1e-07 3.2e-06 18.9 0.0 7 35 158 185 152 187 0.85 # 16675 # 17271 # 1 # ID=2_23;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.467 4_4 - 143 HTH_11 PF08279.7 55 2.9e-06 19.0 0.0 1 1 3e-07 8.6e-06 17.5 0.0 14 37 103 126 95 139 0.85 # 2395 # 2823 # -1 # ID=4_4;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.555 1_20 - 1079 PIF1 PF05970.9 364 1.2e-06 19.8 0.1 1 2 1.3e-07 7.8e-06 17.1 0.0 2 65 478 537 477 588 0.85 # 14569 # 17805 # 1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.527 1_20 - 1079 PIF1 PF05970.9 364 1.2e-06 19.8 0.1 2 2 0.089 5.2 -2.1 0.0 334 363 795 823 783 824 0.84 # 14569 # 17805 # 1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.527 4_4 - 143 HTH_5 PF01022.15 47 0.0004 12.2 0.0 1 1 1.2e-05 0.00069 11.5 0.0 12 36 101 125 89 135 0.84 # 2395 # 2823 # -1 # ID=4_4;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.555 2_23 - 199 TrmB PF01978.14 68 4.7e-06 18.5 0.0 1 1 1.9e-07 1.1e-05 17.3 0.0 6 42 149 185 146 188 0.94 # 16675 # 17271 # 1 # ID=2_23;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.467 1_20 - 1079 Helicase_RecD PF05127.9 177 1.2e-05 17.2 4.8 1 2 0.00059 0.034 5.9 0.1 122 146 498 522 481 539 0.76 # 14569 # 17805 # 1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.527 1_20 - 1079 Helicase_RecD PF05127.9 177 1.2e-05 17.2 4.8 2 2 8.1e-06 0.00047 12.0 0.1 75 114 548 585 529 653 0.69 # 14569 # 17805 # 1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.527 2_9 - 867 AAA_10 PF12846.2 304 1.4e-35 115.3 0.1 1 1 2.4e-36 4.6e-35 113.6 0.0 2 292 492 772 491 780 0.84 # 6745 # 9345 # -1 # ID=2_9;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.497 1_19 - 510 AAA_10 PF12846.2 304 3.1e-07 22.2 0.1 1 2 2.1e-05 0.0004 12.0 0.1 3 41 128 166 126 177 0.92 # 13040 # 14569 # 1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.439 1_19 - 510 AAA_10 PF12846.2 304 3.1e-07 22.2 0.1 2 2 0.00034 0.0065 8.0 0.0 214 286 339 414 307 431 0.75 # 13040 # 14569 # 1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.439 2_2 - 332 AAA_10 PF12846.2 304 0.00015 13.3 0.0 1 1 1.2e-05 0.00024 12.7 0.0 3 29 160 185 158 233 0.81 # 714 # 1709 # -1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.500 4_4 - 143 HTH_20 PF12840.2 61 0.00011 14.1 0.2 1 1 1.3e-05 0.00036 12.5 0.0 27 46 107 126 91 127 0.88 # 2395 # 2823 # -1 # ID=4_4;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.555 1_28 - 226 HTH_20 PF12840.2 61 0.00014 13.8 0.1 1 1 3.6e-05 0.001 11.0 0.0 21 46 30 55 18 63 0.85 # 25251 # 25928 # 1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.627 2_2 - 332 IstB_IS21 PF01695.12 178 1.6e-05 16.5 0.0 1 1 4.5e-07 2.6e-05 15.8 0.0 44 73 155 184 127 201 0.82 # 714 # 1709 # -1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.500 1_4 - 422 DNA_pol_lambd_f PF10391.4 52 1.3e-06 20.1 0.1 1 2 3e-07 1.7e-05 16.5 0.0 6 35 182 211 180 216 0.84 # 2749 # 4014 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.536 1_4 - 422 DNA_pol_lambd_f PF10391.4 52 1.3e-06 20.1 0.1 2 2 0.048 2.8 -0.2 0.0 6 20 265 279 256 283 0.80 # 2749 # 4014 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.536 4_1 - 176 HTH_21 PF13276.1 60 2.4e-18 58.1 0.8 1 1 7.6e-20 4.4e-18 57.3 0.8 19 57 7 49 3 58 0.84 # 1 # 528 # -1 # ID=4_1;partial=10;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.574 2_2 - 332 GTP_EFTU PF00009.22 188 0.00013 13.6 0.2 1 1 3.5e-06 0.0002 12.9 0.2 2 32 157 187 156 205 0.83 # 714 # 1709 # -1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.500 # # Program: hmmsearch # Version: 3.1b1 (May 2013) # Pipeline mode: SEARCH # Query file: /tmp/87c1285d-fb6d-4109-8d63-76bd9efdb8ef # Target file: checkm_output/bins/pm214/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm214/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/87c1285d-fb6d-4109-8d63-76bd9efdb8ef checkm_output/bins/pm214/genes.faa # Current dir: /mnt/data/azomer/reads-for-assembly/files/output/allcontigs/output_1512029421078392887 # Date: Thu Nov 30 10:00:06 2017 # [ok]