# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_4 - 517 HMGL-like PF00682.14 237 5.1e-94 303.4 0.4 1 1 9.9e-95 7e-94 303.0 0.4 1 236 13 251 13 252 0.99 # 3040 # 4590 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.281 1_3 - 255 Homeobox PF00046.24 57 8.7e-06 14.6 0.0 1 2 0.00015 0.0011 7.9 0.0 15 40 83 108 70 110 0.86 # 2148 # 2912 # 1 # ID=1_3;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.251 1_3 - 255 Homeobox PF00046.24 57 8.7e-06 14.6 0.0 2 2 0.0023 0.016 4.1 0.0 30 48 177 195 165 202 0.87 # 2148 # 2912 # 1 # ID=1_3;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.251 1_4 - 517 Trp_syntA PF00290.15 259 6.9e-06 13.8 0.0 1 1 2.4e-06 1.7e-05 12.5 0.0 23 50 25 52 20 64 0.90 # 3040 # 4590 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.281 1_6 - 467 TIGR02211 TIGR02211 221 3e-05 12.4 0.2 1 1 8e-06 5.6e-05 11.5 0.2 15 84 152 223 144 227 0.85 # 5717 # 7117 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.301 # # Program: hmmsearch # Version: 3.1b1 (May 2013) # Pipeline mode: SEARCH # Query file: /tmp/ee8347d6-dc70-4c96-9053-f8799b6bead9 # Target file: checkm_output/bins/pm2088/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm2088/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/ee8347d6-dc70-4c96-9053-f8799b6bead9 checkm_output/bins/pm2088/genes.faa # Current dir: /mnt/data/azomer/reads-for-assembly/files/output/allcontigs/output_1512029421078392887 # Date: Thu Nov 30 09:59:46 2017 # [ok]