# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_10 - 86 HTH_40 PF14493.1 91 8.5e-07 19.0 0.0 1 1 2.5e-07 1.4e-06 18.3 0.0 9 50 31 72 24 75 0.88 # 4713 # 4970 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.422 1_9 - 94 HTH_40 PF14493.1 91 3.4e-05 13.9 0.0 1 1 8.3e-06 4.5e-05 13.5 0.0 9 49 30 70 22 74 0.87 # 4435 # 4716 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.387 1_10 - 86 HTH_38 PF13936.1 44 3.5e-05 13.2 0.0 1 1 5.3e-06 5.8e-05 12.5 0.0 12 41 27 56 19 58 0.85 # 4713 # 4970 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.422 1_5 - 239 TBPIP PF07106.8 169 0.00015 11.1 8.1 1 2 0.00043 0.0047 6.3 0.0 86 140 42 97 27 120 0.78 # 2303 # 3019 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.423 1_5 - 239 TBPIP PF07106.8 169 0.00015 11.1 8.1 2 2 0.0012 0.013 4.8 6.2 86 159 150 223 134 233 0.80 # 2303 # 3019 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.423 1_10 - 86 Sigma70_r4_2 PF08281.7 54 7e-09 24.9 0.1 1 2 8.6e-09 4.7e-08 22.3 0.0 10 51 20 60 19 63 0.93 # 4713 # 4970 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.422 1_10 - 86 Sigma70_r4_2 PF08281.7 54 7e-09 24.9 0.1 2 2 0.055 0.3 0.5 0.1 16 28 72 84 70 85 0.86 # 4713 # 4970 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.422 1_9 - 94 Sigma70_r4_2 PF08281.7 54 1.3e-07 20.9 0.0 1 1 5.9e-08 3.3e-07 19.6 0.0 11 54 20 62 18 62 0.88 # 4435 # 4716 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.387 1_11 - 230 Rep_3 PF01051.16 222 1.5e-63 204.1 4.5 1 1 1.6e-64 1.7e-63 203.9 4.5 2 222 3 219 2 219 0.95 # 5041 # 5730 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.342 1_10 - 86 Terminase_5 PF06056.7 58 7.8e-06 15.3 0.0 1 1 1e-06 1.1e-05 14.8 0.0 7 34 29 56 23 61 0.87 # 4713 # 4970 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.422 1_9 - 94 GerE PF00196.14 58 1.3e-09 27.1 0.0 1 1 3.2e-10 1.8e-09 26.7 0.0 2 44 18 60 17 64 0.93 # 4435 # 4716 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.387 1_10 - 86 GerE PF00196.14 58 1.6e-09 26.9 0.0 1 1 3.7e-10 2e-09 26.5 0.0 2 43 19 60 18 71 0.93 # 4713 # 4970 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.422 1_9 - 94 Sigma70_r4 PF04545.11 50 1.3e-06 17.6 0.0 1 1 5e-07 2.8e-06 16.5 0.0 13 48 27 62 18 63 0.86 # 4435 # 4716 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.387 1_10 - 86 Sigma70_r4 PF04545.11 50 3.5e-05 12.9 0.0 1 1 2.5e-05 0.00013 11.1 0.0 3 40 19 55 19 64 0.86 # 4713 # 4970 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.422 1_9 - 94 HTH_23 PF13384.1 50 7.1e-05 12.3 0.0 1 1 9.8e-06 0.00011 11.7 0.0 10 41 27 58 20 71 0.84 # 4435 # 4716 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.387 1_9 - 94 DUF2089 PF09862.4 113 0.00013 11.6 0.0 1 1 1.2e-05 0.00014 11.5 0.0 56 79 41 64 18 83 0.85 # 4435 # 4716 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.387 1_10 - 86 HTH_30 PF13556.1 59 4.6e-06 16.0 0.0 1 1 6.4e-07 7.1e-06 15.4 0.0 12 47 35 71 28 81 0.80 # 4713 # 4970 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.422 1_11 - 230 RPA PF10134.4 229 1.4e-07 20.7 0.2 1 1 1.8e-08 1.9e-07 20.3 0.2 48 211 24 178 10 191 0.78 # 5041 # 5730 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.342 1_10 - 86 HTH_10 PF04967.7 53 6.5e-05 12.4 0.0 1 1 1.9e-05 0.00021 10.8 0.0 25 47 37 59 35 64 0.89 # 4713 # 4970 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.422 1_9 - 94 Sigma70_ECF PF07638.6 185 8.2e-06 15.4 0.0 1 1 9.2e-07 1e-05 15.1 0.0 130 177 12 60 7 65 0.87 # 4435 # 4716 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.387 1_10 - 86 UPF0122 PF04297.9 101 5.5e-07 19.5 0.1 1 1 1.2e-07 6.8e-07 19.2 0.1 5 62 7 64 4 71 0.84 # 4713 # 4970 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.422 1_9 - 94 UPF0122 PF04297.9 101 3.4e-06 16.9 0.0 1 1 7.7e-07 4.2e-06 16.6 0.0 4 61 6 62 3 65 0.91 # 4435 # 4716 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.387 1_10 - 86 HTH_20 PF12840.2 61 5.9e-05 12.7 0.0 1 1 9.2e-06 0.0001 12.0 0.0 24 47 35 58 19 60 0.89 # 4713 # 4970 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.422 # # Program: hmmsearch # Version: 3.1b1 (May 2013) # Pipeline mode: SEARCH # Query file: /tmp/a6e841d6-7eb2-4be9-97c9-1f5fb719e898 # Target file: checkm_output/bins/pm2080/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm2080/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/a6e841d6-7eb2-4be9-97c9-1f5fb719e898 checkm_output/bins/pm2080/genes.faa # Current dir: /mnt/data/azomer/reads-for-assembly/files/output/allcontigs/output_1512029421078392887 # Date: Thu Nov 30 09:59:34 2017 # [ok]