# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_2 - 138 HTH_IclR PF09339.5 52 1.8e-05 13.5 0.1 1 1 4.8e-06 3.4e-05 12.7 0.1 20 39 5 24 2 26 0.91 # 343 # 756 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.411 1_2 - 138 Sigma70_r4_2 PF08281.7 54 1.7e-05 13.5 0.2 1 1 4.4e-06 3.1e-05 12.7 0.2 28 51 5 28 4 31 0.92 # 343 # 756 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.411 1_7 - 130 Rep_3 PF01051.16 222 1.6e-21 66.0 0.8 1 1 2.5e-22 1.8e-21 65.9 0.8 2 126 3 125 2 129 0.89 # 5702 # 6091 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=3-4bp;gc_cont=0.367 1_2 - 138 MerR_1 PF13411.1 69 7e-07 18.2 0.1 1 1 2.8e-07 2e-06 16.8 0.0 2 35 5 38 4 51 0.91 # 343 # 756 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.411 1_2 - 138 NUMOD1 PF07453.8 37 3.5e-05 12.9 0.3 1 1 1e-05 7.1e-05 11.9 0.3 18 37 5 24 4 24 0.95 # 343 # 756 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.411 1_2 - 138 HTH_Tnp_IS630 PF01710.11 120 1.4e-05 13.9 0.2 1 1 4.6e-06 3.2e-05 12.8 0.1 20 62 5 46 2 52 0.91 # 343 # 756 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.411 1_2 - 138 HTH_23 PF13384.1 50 2.7e-05 13.0 0.1 1 1 7e-06 4.9e-05 12.2 0.1 19 40 5 26 1 27 0.92 # 343 # 756 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.411 1_2 - 138 MerR PF00376.18 38 2.5e-06 16.2 0.0 1 1 6.1e-07 4.3e-06 15.5 0.0 1 27 5 30 5 38 0.87 # 343 # 756 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.411 1_4 - 174 Phage_antitermQ PF06530.7 126 6e-05 11.8 0.0 1 2 0.00046 0.0032 6.2 0.0 95 124 66 95 47 97 0.80 # 2626 # 3147 # 1 # ID=1_4;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.500 1_4 - 174 Phage_antitermQ PF06530.7 126 6e-05 11.8 0.0 2 2 0.0034 0.024 3.4 0.0 69 86 154 171 147 172 0.87 # 2626 # 3147 # 1 # ID=1_4;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.500 1_2 - 138 HTH_17 PF12728.2 51 4.3e-08 22.6 0.0 1 1 1.1e-08 8e-08 21.7 0.0 2 45 4 48 3 51 0.85 # 343 # 756 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.411 1_4 - 174 DDE_Tnp_1_5 PF13737.1 112 4.3e-35 109.5 0.0 1 1 9.4e-36 6.6e-35 108.9 0.0 1 78 19 96 19 109 0.97 # 2626 # 3147 # 1 # ID=1_4;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.500 # # Program: hmmsearch # Version: 3.1b1 (May 2013) # Pipeline mode: SEARCH # Query file: /tmp/13a4d834-03e4-43df-863d-5745423a807f # Target file: checkm_output/bins/pm2077/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm2077/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/13a4d834-03e4-43df-863d-5745423a807f checkm_output/bins/pm2077/genes.faa # Current dir: /mnt/data/azomer/reads-for-assembly/files/output/allcontigs/output_1512029421078392887 # Date: Thu Nov 30 09:59:27 2017 # [ok]