# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_8 - 238 BSP PF04450.7 205 2.3e-05 14.7 0.0 1 1 1.4e-06 3e-05 14.3 0.0 72 112 58 93 41 135 0.81 # 5054 # 5767 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.553 1_14 - 213 HTH_8 PF02954.14 42 2.1e-06 18.1 0.2 1 2 0.0076 0.17 2.4 0.2 2 11 123 132 122 133 0.87 # 11275 # 11913 # -1 # ID=1_14;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.632 1_14 - 213 HTH_8 PF02954.14 42 2.1e-06 18.1 0.2 2 2 3.6e-06 8e-05 13.0 0.0 25 37 178 190 173 192 0.89 # 11275 # 11913 # -1 # ID=1_14;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.632 1_14 - 213 TetR_N PF00440.18 47 1.2e-06 19.0 0.0 1 2 0.086 1.9 -0.9 0.0 25 34 31 40 30 41 0.90 # 11275 # 11913 # -1 # ID=1_14;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.632 1_14 - 213 TetR_N PF00440.18 47 1.2e-06 19.0 0.0 2 2 3.2e-07 7e-06 16.5 0.0 16 43 171 198 163 199 0.88 # 11275 # 11913 # -1 # ID=1_14;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.632 1_3 - 269 CbiA PF01656.18 195 1.2e-24 77.5 0.0 1 1 7.4e-26 1.6e-24 77.1 0.0 4 174 13 204 11 223 0.78 # 1889 # 2695 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.535 1_2 - 108 Sigma70_r4_2 PF08281.7 54 9.8e-08 22.2 0.9 1 2 2.6e-08 5.7e-07 19.8 0.1 22 50 34 62 29 64 0.89 # 1569 # 1892 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.580 1_2 - 108 Sigma70_r4_2 PF08281.7 54 9.8e-08 22.2 0.9 2 2 0.052 1.1 -0.4 0.0 40 51 95 106 94 107 0.86 # 1569 # 1892 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.580 1_17 - 560 rve PF00665.21 120 3.9e-27 85.6 0.0 1 1 3.3e-28 7.3e-27 84.7 0.0 2 120 173 313 172 313 0.95 # 14085 # 15764 # -1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.646 1_2 - 108 Fe_dep_repress PF01325.14 60 9.2e-05 13.2 0.0 1 1 6.9e-06 0.00015 12.5 0.0 24 45 40 61 35 70 0.94 # 1569 # 1892 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.580 1_2 - 108 HTH_Tnp_1 PF01527.15 76 3.1e-07 21.1 0.1 1 1 3.6e-08 3.9e-07 20.8 0.1 6 72 22 96 19 100 0.84 # 1569 # 1892 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.580 1_14 - 213 HTH_Tnp_1 PF01527.15 76 5e-05 14.1 0.0 1 1 8.6e-06 9.4e-05 13.2 0.0 17 43 164 191 156 206 0.81 # 11275 # 11913 # -1 # ID=1_14;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.632 1_2 - 108 GerE PF00196.14 58 5.4e-06 16.5 0.0 1 1 4.2e-07 9.3e-06 15.8 0.0 13 42 33 62 30 64 0.88 # 1569 # 1892 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.580 1_3 - 269 MipZ PF09140.6 261 3.7e-10 30.0 0.1 1 1 4.1e-10 9e-09 25.5 0.1 7 127 14 149 12 167 0.64 # 1889 # 2695 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.535 1_2 - 108 Sigma70_r4 PF04545.11 50 3e-07 20.5 0.4 1 2 5.9e-08 1.3e-06 18.5 0.0 13 45 31 63 26 64 0.88 # 1569 # 1892 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.580 1_2 - 108 Sigma70_r4 PF04545.11 50 3e-07 20.5 0.4 2 2 0.063 1.4 -0.8 0.1 35 48 89 102 88 104 0.84 # 1569 # 1892 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.580 1_4 - 355 KorB PF08535.5 93 2.1e-20 63.6 0.0 1 1 3.8e-21 4.2e-20 62.6 0.0 2 88 139 223 138 227 0.91 # 2688 # 3752 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.594 1_2 - 108 KorB PF08535.5 93 8.5e-05 13.5 0.1 1 1 3e-05 0.00033 11.6 0.1 2 25 37 60 36 67 0.90 # 1569 # 1892 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.580 1_16 - 303 AAA_16 PF13191.1 185 3.5e-06 17.8 0.0 1 1 2.4e-06 5.4e-05 14.0 0.0 8 103 45 145 43 186 0.62 # 13174 # 14082 # -1 # ID=1_16;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.658 1_16 - 303 AAA_22 PF13401.1 131 9.1e-18 55.5 0.0 1 1 7.6e-19 1.7e-17 54.6 0.0 7 126 64 190 59 194 0.94 # 13174 # 14082 # -1 # ID=1_16;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.658 1_17 - 560 HTH_23 PF13384.1 50 8.9e-08 22.5 0.9 1 1 4.8e-08 3.5e-07 20.6 0.9 3 45 23 71 21 76 0.87 # 14085 # 15764 # -1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.646 1_2 - 108 HTH_23 PF13384.1 50 1.8e-05 15.2 0.0 1 1 4.2e-06 3.1e-05 14.4 0.0 12 40 32 61 27 75 0.76 # 1569 # 1892 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.580 1_14 - 213 HTH_23 PF13384.1 50 5.5e-05 13.6 0.1 1 1 5.5e-05 0.0004 10.9 0.0 22 38 176 192 157 195 0.88 # 11275 # 11913 # -1 # ID=1_14;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.632 1_3 - 269 Fer4_NifH PF00142.13 273 1.7e-05 14.8 0.0 1 1 1.6e-06 3.6e-05 13.8 0.0 6 39 14 47 9 78 0.84 # 1889 # 2695 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.535 1_14 - 213 HTH_7 PF02796.10 45 3.5e-07 20.9 0.0 1 1 3e-08 6.6e-07 20.0 0.0 1 40 150 190 150 193 0.76 # 11275 # 11913 # -1 # ID=1_14;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.632 1_17 - 560 HTH_29 PF13551.1 112 7.6e-07 20.1 0.3 1 1 3.4e-08 7.6e-07 20.1 0.3 13 77 39 109 27 132 0.79 # 14085 # 15764 # -1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.646 1_12 - 267 TIGR03413 TIGR03413 248 1.5e-06 18.2 0.0 1 1 1.1e-07 2.3e-06 17.5 0.0 30 164 93 240 71 242 0.64 # 9655 # 10455 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.548 1_8 - 238 SprT-like PF10263.4 157 4e-30 95.3 0.1 1 1 7.2e-31 1.6e-29 93.4 0.1 2 144 13 169 12 237 0.73 # 5054 # 5767 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.553 1_3 - 269 TIGR01968 TIGR01968 261 1.4e-07 21.5 0.1 1 2 2.7e-05 0.00058 9.7 0.0 9 39 15 45 12 51 0.94 # 1889 # 2695 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.535 1_3 - 269 TIGR01968 TIGR01968 261 1.4e-07 21.5 0.1 2 2 2.4e-05 0.00053 9.8 0.1 91 134 96 142 75 265 0.77 # 1889 # 2695 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.535 1_16 - 303 AAA_32 PF13654.1 509 1.7e-05 14.3 0.0 1 2 7.3e-06 0.00016 11.1 0.0 8 81 34 112 26 124 0.86 # 13174 # 14082 # -1 # ID=1_16;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.658 1_16 - 303 AAA_32 PF13654.1 509 1.7e-05 14.3 0.0 2 2 0.0097 0.21 0.8 0.0 472 503 255 286 241 291 0.90 # 13174 # 14082 # -1 # ID=1_16;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.658 1_16 - 303 TniB PF05621.6 302 1.1e-213 698.1 6.2 1 1 5.4e-215 1.2e-213 697.9 6.2 1 302 1 302 1 302 1.00 # 13174 # 14082 # -1 # ID=1_16;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.658 1_17 - 560 HTH_28 PF13518.1 52 1.8e-09 28.3 0.1 1 1 1e-09 7.6e-09 26.3 0.1 1 46 26 78 26 87 0.76 # 14085 # 15764 # -1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.646 1_14 - 213 HTH_28 PF13518.1 52 9.1e-06 16.5 0.1 1 1 1.4e-05 0.0001 13.1 0.0 15 32 174 191 153 193 0.80 # 11275 # 11913 # -1 # ID=1_14;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.632 1_2 - 108 HTH_28 PF13518.1 52 0.00015 12.6 0.0 1 1 3.5e-05 0.00026 11.9 0.0 4 35 29 61 28 64 0.92 # 1569 # 1892 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.580 1_8 - 238 WLM PF08325.5 186 3.2e-05 14.6 0.6 1 1 2.4e-06 5.3e-05 13.9 0.5 71 97 66 92 49 145 0.86 # 5054 # 5767 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.553 1_2 - 108 HTH_24 PF13412.1 48 9.3e-05 12.6 0.0 1 1 1.6e-05 0.00036 10.8 0.0 19 40 40 61 36 64 0.92 # 1569 # 1892 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.580 1_2 - 108 HTH_10 PF04967.7 53 5.8e-05 13.5 0.0 1 1 1e-05 0.00022 11.6 0.0 26 47 41 62 38 64 0.92 # 1569 # 1892 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.580 1_17 - 560 HTH_Tnp_Mu_2 PF09039.6 108 2.3e-06 18.2 0.0 1 1 2.8e-07 6.1e-06 16.8 0.0 37 101 100 163 83 166 0.91 # 14085 # 15764 # -1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.646 1_3 - 269 VirC1 PF07015.6 231 9.4e-09 25.4 0.0 1 2 0.0042 0.092 2.5 0.0 9 41 15 47 10 59 0.88 # 1889 # 2695 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.535 1_3 - 269 VirC1 PF07015.6 231 9.4e-09 25.4 0.0 2 2 1.1e-08 2.5e-07 20.7 0.0 67 134 104 171 95 194 0.84 # 1889 # 2695 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.535 1_14 - 213 HTH_26 PF13443.1 63 9.6e-06 16.6 0.0 1 1 1e-06 2.3e-05 15.4 0.0 1 32 159 193 159 205 0.90 # 11275 # 11913 # -1 # ID=1_14;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.632 1_14 - 213 HTH_17 PF12728.2 51 2.5e-06 18.5 0.1 1 1 1.3e-06 2.8e-05 15.2 0.0 4 29 174 200 173 206 0.85 # 11275 # 11913 # -1 # ID=1_14;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.632 1_14 - 213 HTH_11 PF08279.7 55 1.3e-05 15.6 0.0 1 1 1.6e-06 3.6e-05 14.2 0.0 16 36 172 192 162 194 0.86 # 11275 # 11913 # -1 # ID=1_14;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.632 1_14 - 213 MarR_2 PF12802.2 62 2.2e-05 14.9 0.0 1 1 6.4e-06 7e-05 13.3 0.0 16 42 168 192 143 193 0.78 # 11275 # 11913 # -1 # ID=1_14;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.632 1_2 - 108 MarR_2 PF12802.2 62 3.1e-05 14.4 0.0 1 1 6.4e-06 7e-05 13.3 0.0 23 45 40 62 6 64 0.84 # 1569 # 1892 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.580 1_14 - 213 HTH_5 PF01022.15 47 2.8e-05 14.6 0.0 1 1 3.4e-06 7.5e-05 13.2 0.0 15 35 171 191 159 193 0.87 # 11275 # 11913 # -1 # ID=1_14;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.632 1_14 - 213 HTH_20 PF12840.2 61 1.8e-05 15.3 0.5 1 2 0.064 1.4 -0.3 0.1 19 51 29 64 27 68 0.70 # 11275 # 11913 # -1 # ID=1_14;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.632 1_14 - 213 HTH_20 PF12840.2 61 1.8e-05 15.3 0.5 2 2 5.7e-06 0.00013 12.6 0.0 25 45 172 192 118 194 0.90 # 11275 # 11913 # -1 # ID=1_14;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.632 1_3 - 269 ArsA_ATPase PF02374.10 305 7.2e-06 15.9 0.0 1 2 3.3e-05 0.00072 9.3 0.0 9 38 16 45 12 57 0.90 # 1889 # 2695 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.535 1_3 - 269 ArsA_ATPase PF02374.10 305 7.2e-06 15.9 0.0 2 2 0.0013 0.029 4.1 0.0 110 135 104 129 70 135 0.71 # 1889 # 2695 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.535 1_3 - 269 AAA_31 PF13614.1 157 1.6e-10 31.9 0.1 1 1 4.1e-11 8.9e-10 29.5 0.1 9 155 16 157 13 159 0.83 # 1889 # 2695 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.535 # # Program: hmmsearch # Version: 3.1b1 (May 2013) # Pipeline mode: SEARCH # Query file: /tmp/b6b7e586-c0e2-4c26-a274-d6ec1096b4a3 # Target file: checkm_output/bins/pm207/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm207/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/b6b7e586-c0e2-4c26-a274-d6ec1096b4a3 checkm_output/bins/pm207/genes.faa # Current dir: /mnt/data/azomer/reads-for-assembly/files/output/allcontigs/output_1512029421078392887 # Date: Thu Nov 30 09:59:12 2017 # [ok]