# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_2 - 186 HTH_IclR PF09339.5 52 6.3e-07 17.7 0.2 1 1 4.6e-07 2.3e-06 15.9 0.0 15 40 155 180 151 181 0.85 # 3202 # 3759 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.532 1_2 - 186 HTH_22 PF13309.1 64 1.2e-05 13.8 1.2 1 1 1.2e-05 5.9e-05 11.6 0.1 35 63 156 179 143 180 0.76 # 3202 # 3759 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.532 1_2 - 186 HTH_40 PF14493.1 91 3.2e-05 12.9 0.6 1 1 2.1e-05 0.00011 11.2 0.1 7 32 152 177 147 183 0.89 # 3202 # 3759 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.532 1_2 - 186 HTH_38 PF13936.1 44 2.9e-07 18.7 0.0 1 1 5.9e-08 2.9e-07 18.7 0.0 9 41 147 179 145 182 0.93 # 3202 # 3759 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.532 1_4 - 42 HTH_Tnp_4 PF13613.1 53 4e-05 11.9 0.0 1 1 8.4e-06 4.2e-05 11.8 0.0 21 39 17 35 10 37 0.92 # 4941 # 5066 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.579 1_4 - 42 Sigma70_r4_2 PF08281.7 54 6.8e-06 14.3 0.0 1 1 1.8e-06 8.9e-06 13.9 0.0 27 44 16 33 9 34 0.90 # 4941 # 5066 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.579 1_4 - 42 Sigma70_r4 PF04545.11 50 5.4e-06 14.5 0.1 1 1 1.2e-06 6.1e-06 14.3 0.1 15 42 10 37 9 38 0.92 # 4941 # 5066 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.579 1_4 - 42 HTH_37 PF13744.1 80 2.4e-06 16.1 0.0 1 1 5.5e-07 2.7e-06 15.9 0.0 27 55 11 39 6 40 0.90 # 4941 # 5066 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.579 1_4 - 42 HTH_25 PF13413.1 62 4.3e-09 24.7 0.0 1 1 9.2e-10 4.6e-09 24.6 0.0 2 34 7 39 6 40 0.96 # 4941 # 5066 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.579 1_2 - 186 HTH_Tnp_IS630 PF01710.11 120 4.6e-06 15.0 0.0 1 1 1.9e-06 9.7e-06 14.0 0.0 8 44 148 184 145 185 0.90 # 3202 # 3759 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.532 1_4 - 42 HTH_3 PF01381.17 55 1.7e-13 39.0 0.1 1 1 3.6e-14 1.8e-13 38.9 0.1 2 33 8 39 7 41 0.95 # 4941 # 5066 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.579 1_4 - 42 HTH_23 PF13384.1 50 2.5e-08 22.2 0.0 1 1 1e-08 2.6e-08 22.2 0.0 5 37 4 35 1 38 0.88 # 4941 # 5066 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.579 1_2 - 186 HTH_23 PF13384.1 50 2.2e-06 16.0 0.3 1 1 8.8e-07 2.2e-06 16.0 0.3 5 39 146 180 142 184 0.87 # 3202 # 3759 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.532 1_2 - 186 HTH_7 PF02796.10 45 9.1e-15 43.1 0.5 1 1 5.1e-15 2.6e-14 41.6 0.1 1 44 141 181 141 182 0.97 # 3202 # 3759 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.532 1_4 - 42 HTH_19 PF12844.2 64 6.8e-10 27.7 0.1 1 1 1.6e-10 7.8e-10 27.5 0.1 2 36 5 39 4 40 0.95 # 4941 # 5066 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.579 1_2 - 186 HTH_29 PF13551.1 112 5.4e-06 15.3 0.6 1 2 0.025 0.12 1.3 0.2 24 46 114 136 88 153 0.67 # 3202 # 3759 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.532 1_2 - 186 HTH_29 PF13551.1 112 5.4e-06 15.3 0.6 2 2 1e-05 5.1e-05 12.2 0.0 4 35 151 181 148 184 0.90 # 3202 # 3759 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.532 1_2 - 186 HTH_28 PF13518.1 52 6.6e-06 14.9 0.0 1 1 8.5e-06 2.1e-05 13.2 0.0 8 33 154 179 148 184 0.82 # 3202 # 3759 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.532 1_4 - 42 HTH_28 PF13518.1 52 1.6e-05 13.6 0.1 1 1 7.2e-06 1.8e-05 13.5 0.1 9 32 12 35 9 40 0.87 # 4941 # 5066 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.579 1_4 - 42 HTH_24 PF13412.1 48 4.1e-05 11.7 0.1 1 1 1.1e-05 5.5e-05 11.3 0.1 19 36 17 34 17 35 0.94 # 4941 # 5066 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.579 1_4 - 42 HTH_31 PF13560.1 64 4.9e-12 34.7 0.3 1 1 1e-12 5.1e-12 34.6 0.3 6 38 7 39 5 41 0.94 # 4941 # 5066 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.579 1_4 - 42 HTH_36 PF13730.1 55 1.2e-06 17.4 0.0 1 1 2.9e-07 1.4e-06 17.1 0.0 27 44 17 34 7 36 0.88 # 4941 # 5066 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.579 1_4 - 42 HTH_26 PF13443.1 63 4.1e-05 12.5 0.0 1 1 8.2e-06 4.1e-05 12.5 0.0 8 34 13 39 6 41 0.85 # 4941 # 5066 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.579 1_4 - 42 HTH_11 PF08279.7 55 3.5e-05 12.2 0.1 1 1 7.3e-06 3.6e-05 12.1 0.1 9 34 10 34 4 35 0.85 # 4941 # 5066 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.579 1_2 - 186 TrmB PF01978.14 68 2.9e-06 15.7 0.0 1 1 1.1e-06 5.7e-06 14.8 0.0 19 44 155 180 150 181 0.89 # 3202 # 3759 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.532 1_4 - 42 HTH_Crp_2 PF13545.1 76 2.3e-05 12.9 0.0 1 1 4.6e-06 2.3e-05 12.9 0.0 30 48 17 35 5 38 0.90 # 4941 # 5066 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.579 1_2 - 186 HTH_20 PF12840.2 61 2.1e-07 19.4 0.1 1 2 0.0081 0.04 2.5 0.0 33 52 8 27 6 28 0.90 # 3202 # 3759 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.532 1_2 - 186 HTH_20 PF12840.2 61 2.1e-07 19.4 0.1 2 2 9.1e-06 4.6e-05 12.0 0.1 3 43 110 177 108 180 0.91 # 3202 # 3759 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.532 # # Program: hmmsearch # Version: 3.1b1 (May 2013) # Pipeline mode: SEARCH # Query file: /tmp/4f2ee686-3afa-43ba-a076-7e38de9a40a8 # Target file: checkm_output/bins/pm2069/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm2069/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/4f2ee686-3afa-43ba-a076-7e38de9a40a8 checkm_output/bins/pm2069/genes.faa # Current dir: /mnt/data/azomer/reads-for-assembly/files/output/allcontigs/output_1512029421078392887 # Date: Thu Nov 30 09:59:11 2017 # [ok]