# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_5 - 302 rve_3 PF13683.1 67 6.2e-21 63.3 0.1 1 1 2.4e-21 2.2e-20 61.6 0.0 2 67 216 281 215 281 0.98 # 1261 # 2166 # 1 # ID=1_5;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.552 1_6 - 549 DUF3584 PF12128.3 1201 0.00056 6.7 43.3 1 2 0.00021 0.0018 5.0 20.4 295 414 145 268 123 271 0.84 # 2506 # 4152 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.394 1_6 - 549 DUF3584 PF12128.3 1201 0.00056 6.7 43.3 2 2 2.5e-05 0.00023 8.0 17.5 606 791 265 458 262 465 0.78 # 2506 # 4152 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.394 1_5 - 302 rve PF00665.21 120 4.5e-26 80.9 0.1 1 1 1.1e-26 1e-25 79.7 0.0 3 119 123 243 121 244 0.96 # 1261 # 2166 # 1 # ID=1_5;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.552 1_4 - 122 CPSase_L_D3 PF02787.14 123 4.6e-05 12.7 0.2 1 2 0.0027 0.024 3.9 0.0 5 31 11 37 8 49 0.85 # 938 # 1303 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.530 1_4 - 122 CPSase_L_D3 PF02787.14 123 4.6e-05 12.7 0.2 2 2 0.00031 0.0028 7.0 0.1 42 80 76 112 73 117 0.89 # 938 # 1303 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.530 1_4 - 122 HTH_Tnp_1 PF01527.15 76 3.4e-22 67.8 1.1 1 1 4.8e-23 4.4e-22 67.5 0.6 2 74 8 87 7 89 0.89 # 938 # 1303 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.530 1_4 - 122 HTH_23 PF13384.1 50 2.1e-08 23.3 0.1 1 1 4.6e-09 4.2e-08 22.3 0.1 3 48 14 60 12 62 0.90 # 938 # 1303 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.530 1_4 - 122 HTH_29 PF13551.1 112 2e-06 17.5 0.2 1 1 3.4e-07 3.1e-06 16.9 0.2 11 71 29 88 18 109 0.67 # 938 # 1303 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.530 1_4 - 122 HTH_28 PF13518.1 52 1.7e-09 27.2 0.5 1 1 3.9e-10 3.5e-09 26.2 0.0 1 43 17 60 17 63 0.93 # 938 # 1303 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.530 1_4 - 122 HTH_Tnp_ISL3 PF13542.1 52 3.1e-05 12.7 1.6 1 2 7.2e-06 6.5e-05 11.7 0.1 7 42 8 44 8 46 0.92 # 938 # 1303 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.530 1_4 - 122 HTH_Tnp_ISL3 PF13542.1 52 3.1e-05 12.7 1.6 2 2 0.081 0.73 -1.3 0.0 24 34 53 62 51 64 0.81 # 938 # 1303 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.530 1_4 - 122 CENP-B_N PF04218.8 53 2.8e-07 19.5 0.0 1 1 6e-08 5.4e-07 18.6 0.0 3 44 9 51 8 55 0.86 # 938 # 1303 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.530 1_5 - 302 HTH_21 PF13276.1 60 5.5e-20 60.8 2.0 1 2 2.7e-19 2.5e-18 55.5 0.6 6 57 49 106 45 109 0.79 # 1261 # 2166 # 1 # ID=1_5;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.552 1_5 - 302 HTH_21 PF13276.1 60 5.5e-20 60.8 2.0 2 2 0.0032 0.028 4.0 0.0 11 33 264 288 255 301 0.77 # 1261 # 2166 # 1 # ID=1_5;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.552 # # Program: hmmsearch # Version: 3.1b1 (May 2013) # Pipeline mode: SEARCH # Query file: /tmp/aae0a721-bc7a-4557-9119-b6a71ca7255d # Target file: checkm_output/bins/pm2060/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm2060/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/aae0a721-bc7a-4557-9119-b6a71ca7255d checkm_output/bins/pm2060/genes.faa # Current dir: /mnt/data/azomer/reads-for-assembly/files/output/allcontigs/output_1512029421078392887 # Date: Thu Nov 30 09:59:04 2017 # [ok]