# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_1 - 303 HTH_38 PF13936.1 44 1.1e-09 26.7 0.0 1 2 0.021 0.13 1.0 0.0 14 35 141 162 137 163 0.89 # 1020 # 1928 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.539 1_1 - 303 HTH_38 PF13936.1 44 1.1e-09 26.7 0.0 2 2 4.3e-09 2.6e-08 22.4 0.0 16 39 274 297 266 299 0.91 # 1020 # 1928 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.539 1_1 - 303 Sigma70_r4_2 PF08281.7 54 7.6e-08 20.8 0.0 1 2 0.0054 0.032 2.8 0.0 23 42 144 163 140 166 0.86 # 1020 # 1928 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.539 1_1 - 303 Sigma70_r4_2 PF08281.7 54 7.6e-08 20.8 0.0 2 2 7e-07 4.2e-06 15.2 0.0 24 47 276 299 266 301 0.88 # 1020 # 1928 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.539 1_1 - 303 Terminase_5 PF06056.7 58 4.8e-08 21.5 0.0 1 1 2.4e-08 1.4e-07 20.0 0.0 12 34 277 299 266 302 0.88 # 1020 # 1928 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.539 1_1 - 303 HTH_Tnp_1 PF01527.15 76 1.5e-05 14.0 0.0 1 1 8.5e-06 5.1e-05 12.2 0.0 17 43 271 298 265 300 0.86 # 1020 # 1928 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.539 1_1 - 303 GerE PF00196.14 58 2.4e-06 15.8 0.1 1 2 0.0045 0.027 2.9 0.0 8 32 137 161 136 163 0.94 # 1020 # 1928 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.539 1_1 - 303 GerE PF00196.14 58 2.4e-06 15.8 0.1 2 2 2.1e-05 0.00012 10.4 0.0 12 37 272 297 270 300 0.92 # 1020 # 1928 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.539 1_1 - 303 Sigma70_r4 PF04545.11 50 3.9e-08 21.6 0.0 1 2 6.3e-05 0.00038 8.8 0.0 15 39 141 166 134 170 0.77 # 1020 # 1928 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.539 1_1 - 303 Sigma70_r4 PF04545.11 50 3.9e-08 21.6 0.0 2 2 2.1e-05 0.00012 10.3 0.0 17 38 269 296 266 298 0.82 # 1020 # 1928 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.539 1_1 - 303 HTH_3 PF01381.17 55 1.3e-08 23.6 0.0 1 2 0.0052 0.031 3.2 0.0 3 24 142 162 140 163 0.77 # 1020 # 1928 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.539 1_1 - 303 HTH_3 PF01381.17 55 1.3e-08 23.6 0.0 2 2 1.3e-07 7.7e-07 17.9 0.0 5 29 274 298 270 299 0.90 # 1020 # 1928 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.539 1_1 - 303 HTH_23 PF13384.1 50 1.9e-12 35.5 0.1 1 1 2.1e-12 1.3e-11 32.9 0.0 4 37 265 298 262 302 0.94 # 1020 # 1928 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.539 1_1 - 303 HTH_29 PF13551.1 112 8.3e-06 15.0 1.9 1 1 2.7e-06 1.6e-05 14.0 0.1 1 33 268 299 268 301 0.93 # 1020 # 1928 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.539 1_1 - 303 HTH_28 PF13518.1 52 3.1e-08 22.6 0.3 1 1 1.8e-08 1.1e-07 20.8 0.0 2 32 268 298 267 299 0.86 # 1020 # 1928 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.539 1_1 - 303 HTH_30 PF13556.1 59 9.6e-08 20.6 0.1 1 1 4e-08 2.4e-07 19.3 0.1 7 31 273 297 271 299 0.93 # 1020 # 1928 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.539 1_1 - 303 CENP-B_N PF04218.8 53 3.6e-06 15.4 0.0 1 1 2e-06 1.2e-05 13.7 0.0 19 46 275 302 270 302 0.93 # 1020 # 1928 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.539 1_1 - 303 HTH_17 PF12728.2 51 1.3e-08 24.0 0.1 1 3 0.00073 0.0044 6.3 0.0 2 16 148 162 147 167 0.91 # 1020 # 1928 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.539 1_1 - 303 HTH_17 PF12728.2 51 1.3e-08 24.0 0.1 2 3 0.038 0.23 0.8 0.0 13 25 182 194 177 199 0.81 # 1020 # 1928 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.539 1_1 - 303 HTH_17 PF12728.2 51 1.3e-08 24.0 0.1 3 3 9.6e-06 5.8e-05 12.4 0.0 2 22 279 299 279 302 0.86 # 1020 # 1928 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.539 1_1 - 303 HTH_11 PF08279.7 55 2.1e-06 16.4 0.0 1 2 0.0016 0.0098 4.6 0.0 15 30 146 162 137 169 0.81 # 1020 # 1928 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.539 1_1 - 303 HTH_11 PF08279.7 55 2.1e-06 16.4 0.0 2 2 6.1e-05 0.00037 9.2 0.0 16 34 279 297 268 298 0.86 # 1020 # 1928 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.539 1_1 - 303 Phage_terminase PF10668.4 60 2.3e-05 13.2 0.0 1 1 1.4e-05 8.6e-05 11.3 0.0 25 43 281 299 275 302 0.88 # 1020 # 1928 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.539 # # Program: hmmsearch # Version: 3.1b1 (May 2013) # Pipeline mode: SEARCH # Query file: /tmp/9ec2444e-726b-4e7e-b5dc-3f20bdbf44d2 # Target file: checkm_output/bins/pm2048/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm2048/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/9ec2444e-726b-4e7e-b5dc-3f20bdbf44d2 checkm_output/bins/pm2048/genes.faa # Current dir: /mnt/data/azomer/reads-for-assembly/files/output/allcontigs/output_1512029421078392887 # Date: Thu Nov 30 09:58:46 2017 # [ok]