# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_2 - 249 RepL PF05732.6 165 1.6e-08 21.3 8.6 1 2 0.055 0.11 -0.9 0.0 44 80 19 55 8 69 0.79 # 1463 # 2209 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.244 1_2 - 249 RepL PF05732.6 165 1.6e-08 21.3 8.6 2 2 7e-08 1.4e-07 18.2 9.1 43 135 76 165 42 239 0.78 # 1463 # 2209 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.244 1_2 - 249 HTH_36 PF13730.1 55 2.7e-07 18.1 0.6 1 1 1.4e-07 2.7e-07 18.1 0.6 2 52 84 136 83 139 0.85 # 1463 # 2209 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.244 1_2 - 249 HTH_26 PF13443.1 63 0.00027 8.6 5.2 1 2 0.0076 0.015 3.0 0.2 1 28 75 102 75 103 0.91 # 1463 # 2209 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.244 1_2 - 249 HTH_26 PF13443.1 63 0.00027 8.6 5.2 2 2 0.00045 0.0009 6.9 0.1 11 32 110 131 108 136 0.86 # 1463 # 2209 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.244 1_2 - 249 HTH_Crp_2 PF13545.1 76 2.2e-06 14.9 0.1 1 1 2.3e-06 4.6e-06 13.9 0.1 22 68 103 149 90 151 0.84 # 1463 # 2209 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.244 # # Program: hmmsearch # Version: 3.1b1 (May 2013) # Pipeline mode: SEARCH # Query file: /tmp/7c3bf275-cf65-4901-9a47-7a1306ee984e # Target file: checkm_output/bins/pm2033/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm2033/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/7c3bf275-cf65-4901-9a47-7a1306ee984e checkm_output/bins/pm2033/genes.faa # Current dir: /mnt/data/azomer/reads-for-assembly/files/output/allcontigs/output_1512029421078392887 # Date: Thu Nov 30 09:58:24 2017 # [ok]