# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_1 - 202 MarR PF01047.17 59 2e-06 15.0 0.0 1 1 2.4e-06 4.9e-06 13.7 0.0 14 47 124 157 106 161 0.91 # 51 # 656 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=12bp;gc_cont=0.251 1_1 - 202 GerE PF00196.14 58 2.2e-06 14.4 0.5 1 1 2.8e-06 5.5e-06 13.2 0.5 20 45 129 154 126 155 0.92 # 51 # 656 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=12bp;gc_cont=0.251 1_1 - 202 Homeobox PF00046.24 57 9.9e-07 15.8 0.3 1 1 1.9e-06 3.8e-06 14.0 0.1 32 54 132 154 126 155 0.90 # 51 # 656 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=12bp;gc_cont=0.251 1_1 - 202 RepL PF05732.6 165 4.4e-07 16.6 4.1 1 2 0.024 0.049 0.2 0.3 132 154 34 56 1 80 0.74 # 51 # 656 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=12bp;gc_cont=0.251 1_1 - 202 RepL PF05732.6 165 4.4e-07 16.6 4.1 2 2 2.2e-07 4.4e-07 16.6 4.1 33 130 80 186 63 199 0.74 # 51 # 656 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=12bp;gc_cont=0.251 1_1 - 202 HTH_24 PF13412.1 48 1.3e-08 21.7 0.1 1 1 1.5e-08 3.1e-08 20.4 0.1 18 47 128 157 127 158 0.94 # 51 # 656 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=12bp;gc_cont=0.251 1_1 - 202 HTH_36 PF13730.1 55 1.7e-08 22.0 0.7 1 1 1.6e-08 3.2e-08 21.1 0.7 2 55 104 157 103 157 0.92 # 51 # 656 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=12bp;gc_cont=0.251 1_1 - 202 HTH_45 PF14947.1 77 8.4e-07 16.3 0.7 1 1 1.3e-06 2.7e-06 14.6 0.7 4 54 109 162 106 176 0.82 # 51 # 656 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=12bp;gc_cont=0.251 1_1 - 202 MarR_2 PF12802.2 62 7e-07 16.4 0.0 1 1 9.6e-07 1.9e-06 15.0 0.0 2 54 104 160 103 163 0.87 # 51 # 656 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=12bp;gc_cont=0.251 1_1 - 202 HTH_5 PF01022.15 47 7.1e-07 16.4 0.0 1 1 8e-07 1.6e-06 15.2 0.0 19 45 131 157 114 159 0.86 # 51 # 656 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=12bp;gc_cont=0.251 # # Program: hmmsearch # Version: 3.1b1 (May 2013) # Pipeline mode: SEARCH # Query file: /tmp/dfb90cfd-85c6-4027-89ca-a89e0f12e4c0 # Target file: checkm_output/bins/pm2032/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm2032/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/dfb90cfd-85c6-4027-89ca-a89e0f12e4c0 checkm_output/bins/pm2032/genes.faa # Current dir: /mnt/data/azomer/reads-for-assembly/files/output/allcontigs/output_1512029421078392887 # Date: Thu Nov 30 09:58:24 2017 # [ok]