# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_4 - 134 HTH_IclR PF09339.5 52 1.5e-06 16.2 0.4 1 1 6.9e-07 2.8e-06 15.4 0.4 19 40 4 25 1 26 0.90 # 3366 # 3767 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.485 1_2 - 372 ABC_tran PF00005.22 137 3.3e-05 12.6 6.6 1 1 8.6e-05 0.00034 9.3 3.9 14 80 25 118 15 288 0.65 # 1186 # 2301 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.324 1_2 - 372 AAA_23 PF13476.1 202 1.9e-10 29.7 27.3 1 1 2.6e-09 1.1e-08 24.0 27.3 2 194 5 230 4 354 0.66 # 1186 # 2301 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.324 1_2 - 372 SMC_N PF02463.14 220 4.5e-09 24.2 18.6 1 1 1e-08 4.1e-08 21.0 18.6 1 207 1 328 1 334 0.77 # 1186 # 2301 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.324 1_2 - 372 AAA_21 PF13304.1 303 3.3e-25 77.9 15.6 1 2 8.3e-26 3.3e-25 77.9 15.6 1 301 24 322 24 324 0.69 # 1186 # 2301 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.324 1_2 - 372 AAA_21 PF13304.1 303 3.3e-25 77.9 15.6 2 2 0.033 0.13 0.4 0.1 105 147 326 368 323 371 0.85 # 1186 # 2301 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.324 1_4 - 134 MerR_1 PF13411.1 69 2e-05 12.8 0.1 1 1 1.7e-05 6.6e-05 11.1 0.0 2 30 5 33 4 42 0.86 # 3366 # 3767 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.485 1_2 - 372 AAA_29 PF13555.1 62 1.8e-05 12.7 0.0 1 1 9.1e-06 3.7e-05 11.7 0.0 23 43 22 42 2 45 0.71 # 1186 # 2301 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.324 1_4 - 134 HTH_23 PF13384.1 50 4.5e-06 14.7 0.1 1 1 2.6e-06 1e-05 13.6 0.1 18 40 4 26 1 26 0.91 # 3366 # 3767 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.485 1_4 - 134 HTH_29 PF13551.1 112 1.9e-05 13.2 0.3 1 2 6.7e-05 0.00027 9.5 0.0 12 35 4 26 1 31 0.90 # 3366 # 3767 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.485 1_4 - 134 HTH_29 PF13551.1 112 1.9e-05 13.2 0.3 2 2 0.015 0.061 1.9 0.0 51 74 66 88 56 117 0.80 # 3366 # 3767 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.485 1_2 - 372 TIGR00611 TIGR00611 365 2.3e-12 34.7 2.7 1 2 1.2e-10 4.9e-10 27.0 0.1 3 45 2 44 1 50 0.94 # 1186 # 2301 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.324 1_2 - 372 TIGR00611 TIGR00611 365 2.3e-12 34.7 2.7 2 2 0.00014 0.00056 7.0 0.3 229 353 208 332 147 340 0.68 # 1186 # 2301 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.324 1_4 - 134 HTH_28 PF13518.1 52 1.4e-05 13.5 0.1 1 1 1.1e-05 4.6e-05 11.9 0.1 13 35 4 26 2 28 0.92 # 3366 # 3767 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.485 1_4 - 134 HTH_24 PF13412.1 48 2.6e-05 12.0 0.3 1 1 1.3e-05 5.1e-05 11.1 0.3 16 39 2 25 2 26 0.94 # 3366 # 3767 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.485 1_2 - 372 AAA_15 PF13175.1 415 1.2e-21 65.4 35.9 1 2 4.6e-12 1.8e-11 31.9 18.0 1 226 2 204 2 206 0.58 # 1186 # 2301 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.324 1_2 - 372 AAA_15 PF13175.1 415 1.2e-21 65.4 35.9 2 2 2.7e-12 1.1e-11 32.7 23.1 239 411 146 319 122 323 0.75 # 1186 # 2301 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.324 1_4 - 134 MerR PF00376.18 38 9.1e-06 13.7 0.0 1 1 4.9e-06 2e-05 12.6 0.0 1 23 5 27 5 34 0.92 # 3366 # 3767 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.485 1_2 - 372 Mannitol_dh PF01232.18 151 0.0017 6.7 9.4 1 3 0.0043 0.017 3.4 0.5 37 128 100 192 53 197 0.82 # 1186 # 2301 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.324 1_2 - 372 Mannitol_dh PF01232.18 151 0.0017 6.7 9.4 2 3 4.7e-05 0.00019 9.8 1.0 33 105 169 240 157 248 0.88 # 1186 # 2301 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.324 1_2 - 372 Mannitol_dh PF01232.18 151 0.0017 6.7 9.4 3 3 0.022 0.089 1.1 0.2 47 81 306 336 254 344 0.56 # 1186 # 2301 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.324 1_4 - 134 HTH_17 PF12728.2 51 3.6e-09 25.3 0.0 1 1 1.6e-09 6.2e-09 24.5 0.0 3 44 5 47 4 50 0.79 # 3366 # 3767 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.485 1_2 - 372 DUF2813 PF11398.3 373 1.7e-07 18.9 2.0 1 2 6.4e-08 2.6e-07 18.3 0.2 4 70 3 70 1 127 0.82 # 1186 # 2301 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.324 1_2 - 372 DUF2813 PF11398.3 373 1.7e-07 18.9 2.0 2 2 0.057 0.23 -1.3 0.1 183 240 151 208 125 236 0.56 # 1186 # 2301 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.324 # # Program: hmmsearch # Version: 3.1b1 (May 2013) # Pipeline mode: SEARCH # Query file: /tmp/5218abbc-6f83-4de9-8c86-42669c336f54 # Target file: checkm_output/bins/pm2028/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm2028/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/5218abbc-6f83-4de9-8c86-42669c336f54 checkm_output/bins/pm2028/genes.faa # Current dir: /mnt/data/azomer/reads-for-assembly/files/output/allcontigs/output_1512029421078392887 # Date: Thu Nov 30 09:58:21 2017 # [ok]