# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 3_3 - 228 Cons_hypoth95 PF03602.10 183 1.3e-05 17.3 0.0 1 2 0.00039 0.034 6.2 0.0 112 146 18 54 9 81 0.65 # 2765 # 3448 # 1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.560 3_3 - 228 Cons_hypoth95 PF03602.10 183 1.3e-05 17.3 0.0 2 2 4.8e-05 0.0042 9.2 0.0 41 62 162 183 145 218 0.82 # 2765 # 3448 # 1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.560 4_5 - 229 HTH_IclR PF09339.5 52 0.00016 14.0 0.1 1 1 3.6e-06 0.00031 13.1 0.1 7 48 29 69 28 72 0.91 # 3176 # 3862 # -1 # ID=4_5;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.419 3_3 - 228 TIGR00095 TIGR00095 194 0.00036 12.6 0.0 1 2 0.0015 0.13 4.3 0.0 123 138 19 34 8 78 0.75 # 2765 # 3448 # 1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.560 3_3 - 228 TIGR00095 TIGR00095 194 0.00036 12.6 0.0 2 2 0.00034 0.03 6.3 0.0 53 72 164 183 155 213 0.78 # 2765 # 3448 # 1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.560 2_6 - 877 FtsK_SpoIIIE PF01580.13 205 1.3e-05 17.5 0.1 1 2 2e-06 0.00018 13.7 0.0 39 63 477 505 464 508 0.84 # 2723 # 5353 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.543 2_6 - 877 FtsK_SpoIIIE PF01580.13 205 1.3e-05 17.5 0.1 2 2 0.015 1.3 1.1 0.0 75 166 531 626 530 669 0.82 # 2723 # 5353 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.543 2_6 - 877 MobB PF03205.9 140 0.00065 12.2 0.1 1 1 5.4e-05 0.0024 10.3 0.0 4 37 484 516 482 524 0.79 # 2723 # 5353 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.543 1_18 - 682 MobB PF03205.9 140 0.0008 11.9 0.0 1 1 4.8e-05 0.0021 10.5 0.0 7 34 138 165 134 171 0.89 # 14390 # 16435 # 1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.531 4_5 - 229 HTH_34 PF13601.1 80 1.4e-08 27.4 0.4 1 2 5e-08 4.4e-06 19.4 0.0 2 49 27 74 26 81 0.91 # 3176 # 3862 # -1 # ID=4_5;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.419 4_5 - 229 HTH_34 PF13601.1 80 1.4e-08 27.4 0.4 2 2 0.00083 0.073 5.9 0.1 59 74 212 227 206 228 0.90 # 3176 # 3862 # -1 # ID=4_5;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.419 4_5 - 229 MarR PF01047.17 59 0.00019 13.9 0.1 1 1 9.6e-06 0.00084 11.8 0.1 6 48 28 70 25 73 0.88 # 3176 # 3862 # -1 # ID=4_5;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.419 4_2 - 223 TetR_N PF00440.18 47 1.4e-18 59.1 0.0 1 1 5.2e-20 2.3e-18 58.4 0.0 2 47 44 89 43 89 0.96 # 507 # 1175 # 1 # ID=4_2;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.326 4_4 - 208 TetR_N PF00440.18 47 2.9e-18 58.0 0.0 1 2 1.7e-18 7.5e-17 53.5 0.0 2 47 10 55 9 55 0.97 # 2575 # 3198 # 1 # ID=4_4;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.402 4_4 - 208 TetR_N PF00440.18 47 2.9e-18 58.0 0.0 2 2 0.016 0.7 2.4 0.0 1 15 169 183 169 185 0.86 # 2575 # 3198 # 1 # ID=4_4;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.402 1_19 - 1757 AAA_19 PF13245.1 76 1.6e-07 23.8 2.0 1 1 1.1e-08 4.9e-07 22.2 0.5 7 76 981 1047 974 1047 0.74 # 16435 # 21705 # 1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.600 2_12 - 123 AAA_19 PF13245.1 76 0.00059 12.3 0.0 1 1 2.2e-05 0.00095 11.7 0.0 13 37 91 115 82 122 0.78 # 7892 # 8260 # -1 # ID=2_12;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.423 2_12 - 123 KTI12 PF08433.5 270 0.00074 11.4 0.1 1 1 1.4e-05 0.0013 10.7 0.1 5 30 92 117 91 120 0.87 # 7892 # 8260 # -1 # ID=2_12;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.423 3_3 - 228 MethyltransfD12 PF02086.10 260 0.00034 12.8 0.0 1 2 0.015 1.3 1.0 0.0 175 188 18 31 8 92 0.82 # 2765 # 3448 # 1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.560 3_3 - 228 MethyltransfD12 PF02086.10 260 0.00034 12.8 0.0 2 2 3.4e-05 0.003 9.7 0.0 20 46 163 189 148 214 0.81 # 2765 # 3448 # 1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.560 1_17 - 216 Terminase_5 PF06056.7 58 0.00038 12.8 0.0 1 1 1.3e-05 0.0011 11.3 0.0 16 44 115 143 113 150 0.93 # 13672 # 14319 # -1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.540 1_30 - 283 TIGR00573 TIGR00573 217 3.2e-14 45.3 0.0 1 1 6.9e-16 6.1e-14 44.4 0.0 12 181 107 274 103 281 0.79 # 29145 # 29993 # 1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.561 3_12 - 188 Methyltransf_26 PF13659.1 117 4.1e-14 45.4 0.0 1 1 1.6e-15 7e-14 44.6 0.0 2 114 52 147 51 150 0.90 # 9175 # 9738 # 1 # ID=3_12;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.580 3_3 - 228 Methyltransf_26 PF13659.1 117 7.5e-12 38.1 0.1 1 2 3e-07 1.3e-05 17.9 0.0 57 114 7 71 2 74 0.72 # 2765 # 3448 # 1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.560 3_3 - 228 Methyltransf_26 PF13659.1 117 7.5e-12 38.1 0.1 2 2 2.5e-07 1.1e-05 18.2 0.0 4 44 167 206 164 221 0.80 # 2765 # 3448 # 1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.560 1_18 - 682 Zeta_toxin PF06414.7 201 0.00062 11.6 0.0 1 1 3.2e-05 0.0028 9.5 0.0 21 49 136 165 128 182 0.85 # 14390 # 16435 # 1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.531 4_6 - 129 ACT_7 PF13840.1 65 6e-05 15.3 0.1 1 1 2e-06 0.00018 13.8 0.0 9 60 65 120 57 123 0.74 # 3870 # 4256 # -1 # ID=4_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.388 1_19 - 1757 AAA_30 PF13604.1 196 1.5e-44 144.6 15.6 1 3 0.04 1.8 0.8 0.0 41 86 223 269 218 282 0.84 # 16435 # 21705 # 1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.600 1_19 - 1757 AAA_30 PF13604.1 196 1.5e-44 144.6 15.6 2 3 1.9e-05 0.00084 11.6 3.9 7 146 420 551 416 561 0.81 # 16435 # 21705 # 1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.600 1_19 - 1757 AAA_30 PF13604.1 196 1.5e-44 144.6 15.6 3 3 9.9e-44 4.3e-42 136.6 1.9 1 186 968 1156 968 1162 0.94 # 16435 # 21705 # 1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.600 1_18 - 682 AAA_30 PF13604.1 196 0.00048 12.4 0.0 1 1 2.4e-05 0.001 11.3 0.0 21 57 134 170 126 176 0.85 # 14390 # 16435 # 1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.531 1_17 - 216 HTH_Tnp_1 PF01527.15 76 1.1e-22 72.6 0.0 1 1 3.6e-24 3.1e-22 71.1 0.0 2 69 91 162 90 169 0.87 # 13672 # 14319 # -1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.540 1_18 - 682 TraG-D_C PF12696.2 128 6.2e-21 67.4 0.0 1 1 1.2e-22 1.1e-20 66.6 0.0 1 127 365 487 365 488 0.86 # 14390 # 16435 # 1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.531 3_3 - 228 UPF0020 PF01170.13 180 1e-05 17.9 0.0 1 2 0.00052 0.023 7.0 0.0 103 123 17 37 4 88 0.71 # 2765 # 3448 # 1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.560 3_3 - 228 UPF0020 PF01170.13 180 1e-05 17.9 0.0 2 2 0.00013 0.0056 9.0 0.0 28 54 163 189 158 221 0.67 # 2765 # 3448 # 1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.560 3_12 - 188 UPF0020 PF01170.13 180 0.00076 11.8 0.0 1 1 5.8e-05 0.0026 10.1 0.0 18 43 40 65 32 130 0.71 # 9175 # 9738 # 1 # ID=3_12;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.580 3_12 - 188 Methyltransf_25 PF13649.1 101 0.00011 15.3 0.0 1 1 1.8e-06 0.00016 14.8 0.0 1 101 54 142 54 142 0.81 # 9175 # 9738 # 1 # ID=3_12;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.580 7_1 - 348 DDE_Tnp_1 PF01609.16 213 5e-28 90.8 0.0 1 1 8.6e-30 7.5e-28 90.2 0.0 4 210 59 296 56 299 0.93 # 2 # 1045 # -1 # ID=7_1;partial=11;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.452 4_6 - 129 ACT PF01842.20 66 8.4e-08 24.4 0.2 1 2 0.011 0.93 1.9 0.0 6 26 7 27 3 47 0.85 # 3870 # 4256 # -1 # ID=4_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.388 4_6 - 129 ACT PF01842.20 66 8.4e-08 24.4 0.2 2 2 1.6e-08 1.4e-06 20.5 0.0 9 29 78 98 74 115 0.91 # 3870 # 4256 # -1 # ID=4_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.388 2_14 - 484 DivIC PF04977.10 80 0.00082 11.6 4.6 1 1 1.9e-05 0.0016 10.7 4.6 17 66 76 124 72 125 0.92 # 8755 # 10206 # -1 # ID=2_14;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.578 6_1 - 474 KorB PF08535.5 93 2.8e-05 17.0 0.0 1 1 9.1e-07 8e-05 15.5 0.0 2 42 152 192 151 206 0.91 # 293 # 1714 # -1 # ID=6_1;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.587 4_5 - 229 HTH_27 PF13463.1 68 5.7e-05 16.2 0.3 1 1 2.5e-06 0.00022 14.3 0.0 7 48 29 69 25 82 0.85 # 3176 # 3862 # -1 # ID=4_5;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.419 3_3 - 228 N6_N4_Mtase PF01555.13 231 6.4e-37 119.9 0.0 1 1 2.9e-36 2.5e-34 111.4 0.0 1 227 21 199 21 203 0.91 # 2765 # 3448 # 1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.560 3_1 - 319 Hydantoinase_A PF01968.13 290 1.3e-08 27.0 0.2 1 3 0.054 4.7 -1.1 0.0 154 175 130 151 94 155 0.79 # 1 # 957 # -1 # ID=3_1;partial=10;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.389 3_1 - 319 Hydantoinase_A PF01968.13 290 1.3e-08 27.0 0.2 2 3 3.2e-06 0.00028 12.7 0.0 68 97 156 183 149 192 0.81 # 1 # 957 # -1 # ID=3_1;partial=10;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.389 3_1 - 319 Hydantoinase_A PF01968.13 290 1.3e-08 27.0 0.2 3 3 8.2e-06 0.00072 11.4 0.0 214 265 242 297 198 307 0.78 # 1 # 957 # -1 # ID=3_1;partial=10;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.389 1_18 - 682 AAA_16 PF13191.1 185 3e-06 20.0 0.0 1 1 3.6e-07 1.6e-05 17.7 0.0 21 60 128 168 125 210 0.81 # 14390 # 16435 # 1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.531 2_12 - 123 AAA_16 PF13191.1 185 0.0012 11.6 0.1 1 1 4.6e-05 0.002 10.8 0.1 22 48 86 112 80 119 0.88 # 7892 # 8260 # -1 # ID=2_12;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.423 4_1 - 139 HTH_AraC PF00165.18 42 9.3e-22 69.1 2.3 1 2 2.6e-12 2.3e-10 32.8 0.0 1 42 37 78 37 78 0.97 # 78 # 494 # -1 # ID=4_1;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.357 4_1 - 139 HTH_AraC PF00165.18 42 9.3e-22 69.1 2.3 2 2 3.6e-13 3.1e-11 35.6 1.1 2 42 90 128 89 128 0.95 # 78 # 494 # -1 # ID=4_1;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.357 4_9 - 42 HTH_1 PF00126.22 60 2.3e-15 48.9 0.1 1 1 2.8e-17 2.4e-15 48.8 0.1 1 38 3 40 3 41 0.96 # 6449 # 6574 # 1 # ID=4_9;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.421 1_17 - 216 LZ_Tnp_IS481 PF13011.1 85 4.3e-05 16.6 0.0 1 2 0.0052 0.46 3.7 0.0 27 55 20 48 11 52 0.84 # 13672 # 14319 # -1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.540 1_17 - 216 LZ_Tnp_IS481 PF13011.1 85 4.3e-05 16.6 0.0 2 2 3.5e-05 0.0031 10.6 0.0 15 54 102 141 99 166 0.87 # 13672 # 14319 # -1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.540 1_10 - 941 Orn_Arg_deC_N PF02784.11 251 0.00089 11.2 0.0 1 1 1e-05 0.00089 11.2 0.0 171 212 610 650 598 684 0.76 # 6427 # 9249 # 1 # ID=1_10;partial=00;start_type=GTG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.512 1_30 - 283 RNase_H_2 PF13482.1 164 1.6e-05 17.4 0.0 1 1 1.3e-06 0.00012 14.7 0.0 1 119 105 248 105 257 0.61 # 29145 # 29993 # 1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.561 1_17 - 216 HTH_23 PF13384.1 50 5.5e-11 34.6 0.0 1 2 2.9e-05 0.00086 11.7 0.0 10 46 10 47 7 48 0.85 # 13672 # 14319 # -1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.540 1_17 - 216 HTH_23 PF13384.1 50 5.5e-11 34.6 0.0 2 2 4.5e-08 1.3e-06 20.7 0.0 10 46 104 141 99 145 0.83 # 13672 # 14319 # -1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.540 6_1 - 474 HTH_23 PF13384.1 50 4.9e-07 22.1 0.0 1 1 1.1e-07 3.3e-06 19.4 0.0 12 40 148 176 141 180 0.92 # 293 # 1714 # -1 # ID=6_1;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.587 4_4 - 208 HTH_23 PF13384.1 50 0.00022 13.6 0.0 1 1 2e-05 0.00058 12.3 0.0 10 39 13 47 11 56 0.81 # 2575 # 3198 # 1 # ID=4_4;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.402 1_17 - 216 HTH_29 PF13551.1 112 6.4e-05 15.8 0.0 1 2 0.014 0.61 3.0 0.0 4 42 10 48 8 59 0.85 # 13672 # 14319 # -1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.540 1_17 - 216 HTH_29 PF13551.1 112 6.4e-05 15.8 0.0 2 2 8.3e-05 0.0036 10.2 0.0 15 41 115 141 101 164 0.84 # 13672 # 14319 # -1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.540 6_1 - 474 HTH_29 PF13551.1 112 0.00036 13.5 0.0 1 1 5e-05 0.0022 10.9 0.0 8 36 150 177 143 189 0.86 # 293 # 1714 # -1 # ID=6_1;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.587 3_12 - 188 Met_10 PF02475.11 200 0.00077 11.8 0.0 1 1 1.1e-05 0.00098 11.4 0.0 98 189 47 132 29 145 0.78 # 9175 # 9738 # 1 # ID=3_12;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.580 1_30 - 283 DNA_pol_A_exo1 PF01612.15 176 3e-06 19.5 0.0 1 1 7.4e-08 6.5e-06 18.4 0.0 11 95 93 196 84 207 0.77 # 29145 # 29993 # 1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.561 1_15 - 524 DDE_Tnp_IS66 PF03050.9 271 7.8e-105 342.6 0.3 1 2 0.0087 0.77 1.6 2.4 159 205 35 84 14 125 0.53 # 11734 # 13305 # -1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.566 1_15 - 524 DDE_Tnp_IS66 PF03050.9 271 7.8e-105 342.6 0.3 2 2 8.9e-107 7.8e-105 342.6 0.3 1 270 186 472 186 473 0.99 # 11734 # 13305 # -1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.566 3_12 - 188 Methyltransf_31 PF13847.1 152 3e-07 22.9 0.0 1 1 4.2e-09 3.7e-07 22.6 0.0 5 119 52 162 48 183 0.84 # 9175 # 9738 # 1 # ID=3_12;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.580 1_18 - 682 TrwB_AAD_bind PF10412.4 386 2.6e-150 493.0 0.0 1 1 7.3e-152 3.2e-150 492.7 0.0 2 386 118 507 117 507 0.99 # 14390 # 16435 # 1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.531 2_6 - 877 TrwB_AAD_bind PF10412.4 386 4.7e-07 21.4 0.2 1 2 4.8e-08 2.1e-06 19.2 0.0 15 53 480 518 471 548 0.80 # 2723 # 5353 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.543 2_6 - 877 TrwB_AAD_bind PF10412.4 386 4.7e-07 21.4 0.2 2 2 0.054 2.4 -0.7 0.1 261 317 714 770 706 773 0.92 # 2723 # 5353 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.543 3_3 - 228 Methyltransf_15 PF09445.5 164 0.00061 12.1 0.0 1 2 0.042 3.7 -0.2 0.0 53 79 4 29 2 33 0.90 # 2765 # 3448 # 1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.560 3_3 - 228 Methyltransf_15 PF09445.5 164 0.00061 12.1 0.0 2 2 3.9e-05 0.0034 9.7 0.0 3 32 166 195 164 209 0.85 # 2765 # 3448 # 1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.560 3_12 - 188 Methyltransf_12 PF08242.7 99 1.5e-05 18.1 0.0 1 1 3.1e-07 2.7e-05 17.3 0.0 1 99 55 144 55 144 0.87 # 9175 # 9738 # 1 # ID=3_12;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.580 3_12 - 188 Methyltrans_SAM PF10672.4 286 0.00064 11.3 0.0 1 1 9.9e-06 0.00087 10.9 0.0 196 261 113 173 93 180 0.78 # 9175 # 9738 # 1 # ID=3_12;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.580 1_30 - 283 TIGR01406 TIGR01406 231 1.4e-17 56.4 0.0 1 1 3.4e-19 3e-17 55.4 0.0 4 167 106 265 104 280 0.74 # 29145 # 29993 # 1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.561 2_6 - 877 DUF87 PF01935.12 229 2e-07 23.7 0.0 1 1 6.9e-09 6.1e-07 22.2 0.0 26 222 483 670 469 677 0.77 # 2723 # 5353 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.543 1_17 - 216 HTH_28 PF13518.1 52 3.9e-09 29.2 0.0 1 2 0.00056 0.05 6.5 0.0 5 41 10 47 8 52 0.83 # 13672 # 14319 # -1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.540 1_17 - 216 HTH_28 PF13518.1 52 3.9e-09 29.2 0.0 2 2 2.7e-08 2.4e-06 20.3 0.0 3 41 102 141 100 145 0.82 # 13672 # 14319 # -1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.540 4_4 - 208 HTH_Tnp_1_2 PF13022.1 142 8.8e-05 15.1 0.0 1 1 1.7e-06 0.00015 14.3 0.0 26 77 15 64 2 68 0.78 # 2575 # 3198 # 1 # ID=4_4;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.402 4_5 - 229 HTH_24 PF13412.1 48 6.7e-07 21.4 0.1 1 1 1.5e-08 1.3e-06 20.5 0.1 3 48 25 70 23 70 0.90 # 3176 # 3862 # -1 # ID=4_5;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.419 4_1 - 139 HTH_18 PF12833.2 81 7e-24 76.5 2.0 1 1 1.1e-25 9.4e-24 76.1 2.0 1 81 50 129 50 129 0.97 # 78 # 494 # -1 # ID=4_1;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.357 3_12 - 188 TIGR03533 TIGR03533 284 1.5e-05 16.9 0.0 1 1 2.6e-07 2.3e-05 16.2 0.0 114 210 43 133 36 141 0.86 # 9175 # 9738 # 1 # ID=3_12;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.580 3_12 - 188 TIGR03534 TIGR03534 253 3.2e-08 25.7 0.0 1 1 4.3e-10 3.8e-08 25.4 0.0 81 175 45 131 15 148 0.86 # 9175 # 9738 # 1 # ID=3_12;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.580 1_30 - 283 TIGR01298 TIGR01298 200 1.6e-06 20.4 0.9 1 1 2e-07 1.7e-05 17.0 0.9 93 189 167 267 98 275 0.83 # 29145 # 29993 # 1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.561 4_5 - 229 HTH_10 PF04967.7 53 0.00064 12.1 0.2 1 1 2.7e-05 0.0024 10.2 0.0 22 46 38 62 36 65 0.92 # 3176 # 3862 # -1 # ID=4_5;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.419 1_19 - 1757 UvrD_C_2 PF13538.1 104 1.1e-07 24.7 0.7 1 2 0.013 1.1 2.2 0.0 6 44 1227 1265 1223 1295 0.74 # 16435 # 21705 # 1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.600 1_19 - 1757 UvrD_C_2 PF13538.1 104 1.1e-07 24.7 0.7 2 2 5.2e-08 4.6e-06 19.5 0.2 3 102 1341 1444 1339 1446 0.77 # 16435 # 21705 # 1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.600 3_12 - 188 TIGR00755 TIGR00755 256 3.2e-09 28.8 0.0 1 1 4.9e-11 4.3e-09 28.4 0.0 8 105 29 123 25 134 0.91 # 9175 # 9738 # 1 # ID=3_12;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.580 3_1 - 319 StbA PF06406.6 318 6.9e-157 514.0 1.5 1 1 8.8e-159 7.7e-157 513.8 1.5 1 317 1 317 1 318 0.99 # 1 # 957 # -1 # ID=3_1;partial=10;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.389 3_1 - 319 YbaB_DNA_bd PF02575.11 93 0.00051 12.7 0.1 1 3 0.037 3.3 0.5 0.0 33 63 129 160 112 160 0.80 # 1 # 957 # -1 # ID=3_1;partial=10;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.389 3_1 - 319 YbaB_DNA_bd PF02575.11 93 0.00051 12.7 0.1 2 3 0.028 2.4 0.9 0.0 63 78 201 216 195 223 0.84 # 1 # 957 # -1 # ID=3_1;partial=10;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.389 3_1 - 319 YbaB_DNA_bd PF02575.11 93 0.00051 12.7 0.1 3 3 0.00045 0.039 6.6 0.0 63 87 247 271 235 276 0.84 # 1 # 957 # -1 # ID=3_1;partial=10;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.389 1_18 - 682 AAA_17 PF13207.1 121 0.00024 14.7 0.0 1 1 1.1e-05 0.00095 12.7 0.0 3 27 135 163 133 208 0.68 # 14390 # 16435 # 1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.531 1_29 - 94 TIGR02211 TIGR02211 221 8.1e-05 14.6 0.0 1 1 1e-06 8.8e-05 14.5 0.0 111 167 10 72 2 87 0.79 # 28818 # 29099 # 1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.525 1_19 - 1757 Viral_helicase1 PF01443.13 234 0.00034 12.9 0.0 1 2 0.00014 0.012 7.8 0.0 1 118 988 1121 988 1212 0.52 # 16435 # 21705 # 1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.600 1_19 - 1757 Viral_helicase1 PF01443.13 234 0.00034 12.9 0.0 2 2 0.0066 0.58 2.3 0.0 171 234 1387 1447 1342 1447 0.63 # 16435 # 21705 # 1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.600 2_6 - 877 Pox_A32 PF04665.7 241 0.00065 11.7 0.1 1 1 2.3e-05 0.002 10.1 0.0 7 38 474 505 470 520 0.85 # 2723 # 5353 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.543 4_4 - 208 CENP-B_N PF04218.8 53 0.00044 12.4 0.0 1 1 1e-05 0.00088 11.5 0.0 26 51 28 53 23 55 0.90 # 2575 # 3198 # 1 # ID=4_4;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.402 1_18 - 682 T4SS-DNA_transf PF02534.9 469 5.3e-10 31.1 0.0 1 1 3.3e-11 1.4e-09 29.7 0.0 264 361 328 422 144 446 0.82 # 14390 # 16435 # 1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.531 2_6 - 877 T4SS-DNA_transf PF02534.9 469 0.00028 12.2 0.0 1 2 0.0047 0.21 2.8 0.0 105 182 534 605 471 624 0.82 # 2723 # 5353 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.543 2_6 - 877 T4SS-DNA_transf PF02534.9 469 0.00028 12.2 0.0 2 2 0.00023 0.01 7.1 0.0 319 378 712 770 663 772 0.91 # 2723 # 5353 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.543 4_1 - 139 Ribosomal_S8 PF00410.14 129 0.0012 11.5 1.8 1 2 0.0059 0.52 2.9 0.1 41 73 2 29 1 35 0.56 # 78 # 494 # -1 # ID=4_1;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.357 4_1 - 139 Ribosomal_S8 PF00410.14 129 0.0012 11.5 1.8 2 2 0.00012 0.011 8.4 0.1 50 87 90 128 50 135 0.79 # 78 # 494 # -1 # ID=4_1;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.357 3_12 - 188 MTS PF05175.9 170 7.6e-10 31.1 0.0 1 1 1.2e-11 1e-09 30.7 0.0 31 141 50 149 41 166 0.84 # 9175 # 9738 # 1 # ID=3_12;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.580 4_5 - 229 HTH_45 PF14947.1 77 7.8e-05 15.2 0.1 1 2 1.1e-05 0.00095 11.7 0.0 10 53 29 76 26 97 0.75 # 3176 # 3862 # -1 # ID=4_5;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.419 4_5 - 229 HTH_45 PF14947.1 77 7.8e-05 15.2 0.1 2 2 0.051 4.5 -0.0 0.0 55 65 211 221 198 225 0.79 # 3176 # 3862 # -1 # ID=4_5;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.419 4_5 - 229 MarR_2 PF12802.2 62 7e-05 15.2 0.1 1 1 4.1e-06 0.00018 13.9 0.1 9 55 29 73 21 78 0.83 # 3176 # 3862 # -1 # ID=4_5;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.419 4_9 - 42 MarR_2 PF12802.2 62 8.5e-05 15.0 0.0 1 1 2e-06 8.6e-05 14.9 0.0 5 46 3 40 1 41 0.85 # 6449 # 6574 # 1 # ID=4_9;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.421 4_5 - 229 HTH_5 PF01022.15 47 7.2e-11 34.4 0.1 1 1 1.8e-12 1.6e-10 33.3 0.1 3 46 26 70 24 71 0.92 # 3176 # 3862 # -1 # ID=4_5;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.419 4_5 - 229 TrmB PF01978.14 68 9.9e-08 24.4 0.0 1 1 2.4e-09 2.1e-07 23.4 0.0 11 62 28 79 26 83 0.93 # 3176 # 3862 # -1 # ID=4_5;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.419 4_2 - 223 UPF0122 PF04297.9 101 4.2e-05 16.3 1.4 1 1 1.1e-06 9.8e-05 15.1 1.4 3 76 29 102 26 125 0.83 # 507 # 1175 # 1 # ID=4_2;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.326 1_30 - 283 RNase_T PF00929.19 164 1.1e-25 83.5 0.0 1 1 1.7e-27 1.5e-25 83.1 0.0 1 163 105 262 105 263 0.95 # 29145 # 29993 # 1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.561 2_6 - 877 AAA_10 PF12846.2 304 3.6e-49 160.5 0.0 1 1 1.5e-50 6.5e-49 159.6 0.0 1 294 480 769 480 775 0.89 # 2723 # 5353 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.543 1_18 - 682 AAA_10 PF12846.2 304 1e-10 34.2 0.0 1 1 5.1e-11 2.2e-09 29.8 0.0 3 296 133 440 132 446 0.68 # 14390 # 16435 # 1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.531 4_5 - 229 HTH_20 PF12840.2 61 1.1e-12 40.3 0.2 1 1 6.8e-14 3e-12 39.0 0.1 3 61 18 76 16 76 0.94 # 3176 # 3862 # -1 # ID=4_5;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.419 4_4 - 208 HTH_20 PF12840.2 61 0.00052 12.6 0.0 1 1 2.7e-05 0.0012 11.4 0.0 21 46 21 46 12 61 0.84 # 2575 # 3198 # 1 # ID=4_4;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.402 5_1 - 74 Dimerisation PF08100.6 51 8.2e-05 15.2 0.5 1 1 1.4e-06 0.00012 14.6 0.1 15 47 28 65 26 66 0.81 # 2 # 223 # -1 # ID=5_1;partial=10;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.437 3_12 - 188 RrnaAD PF00398.15 262 9.8e-09 27.3 0.0 1 1 1.4e-10 1.2e-08 26.9 0.0 9 113 29 128 24 148 0.87 # 9175 # 9738 # 1 # ID=3_12;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.580 3_12 - 188 Methyltransf_18 PF12847.2 112 1.6e-10 34.3 0.0 1 1 3.9e-12 3.4e-10 33.3 0.0 4 109 53 146 50 148 0.90 # 9175 # 9738 # 1 # ID=3_12;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.580 3_3 - 228 Methyltransf_11 PF08241.7 95 0.0008 12.7 0.0 1 2 0.0024 0.22 4.9 0.0 78 93 53 68 48 70 0.84 # 2765 # 3448 # 1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.560 3_3 - 228 Methyltransf_11 PF08241.7 95 0.0008 12.7 0.0 2 2 0.002 0.18 5.1 0.0 5 54 172 220 168 226 0.82 # 2765 # 3448 # 1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.560 1_19 - 1757 AAA_11 PF13086.1 236 0.00018 13.8 0.0 1 1 2.1e-06 0.00018 13.8 0.0 2 75 969 1039 968 1059 0.81 # 16435 # 21705 # 1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.600 6_3 - 176 SSB PF00436.20 104 2.1e-41 132.8 0.4 1 1 3.4e-43 3e-41 132.3 0.4 1 101 6 109 6 112 0.96 # 2066 # 2593 # -1 # ID=6_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.576 # # Program: hmmsearch # Version: 3.1b1 (May 2013) # Pipeline mode: SEARCH # Query file: /tmp/c5ad0c6c-8c0d-4273-a029-3da373ba5263 # Target file: checkm_output/bins/pm2024/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm2024/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/c5ad0c6c-8c0d-4273-a029-3da373ba5263 checkm_output/bins/pm2024/genes.faa # Current dir: /mnt/data/azomer/reads-for-assembly/files/output/allcontigs/output_1512029421078392887 # Date: Thu Nov 30 09:58:10 2017 # [ok]