# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_11 - 209 HTH_IclR PF09339.5 52 6.8e-05 12.8 0.1 1 1 9.5e-06 0.00015 11.7 0.1 16 39 182 205 176 207 0.83 # 8645 # 9271 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.596 1_7 - 159 HTH_40 PF14493.1 91 6.5e-05 13.5 0.0 1 1 7.1e-06 0.00011 12.7 0.0 11 78 19 85 9 93 0.81 # 6523 # 6999 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.623 1_11 - 209 HTH_38 PF13936.1 44 1.7e-05 14.7 3.0 1 2 0.096 1.5 -1.1 0.4 3 16 74 87 72 93 0.77 # 8645 # 9271 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.596 1_11 - 209 HTH_38 PF13936.1 44 1.7e-05 14.7 3.0 2 2 1.1e-06 1.8e-05 14.7 0.1 12 39 176 203 171 206 0.89 # 8645 # 9271 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.596 1_7 - 159 Sigma70_r4_2 PF08281.7 54 1.1e-05 15.3 0.0 1 1 1.3e-06 2.1e-05 14.3 0.0 12 50 8 46 8 49 0.94 # 6523 # 6999 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.623 1_7 - 159 HTH_Tnp_1 PF01527.15 76 8.5e-11 32.1 0.1 1 1 1.1e-11 1.7e-10 31.1 0.1 3 73 2 71 1 74 0.86 # 6523 # 6999 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.623 1_11 - 209 GerE PF00196.14 58 1.3e-05 14.8 0.0 1 1 2e-06 3.2e-05 13.6 0.0 10 35 176 201 174 206 0.94 # 8645 # 9271 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.596 1_7 - 159 MerR_1 PF13411.1 69 0.00011 12.3 0.0 1 1 2.3e-05 0.00037 10.6 0.0 4 21 26 43 23 56 0.86 # 6523 # 6999 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.623 1_7 - 159 HTH_23 PF13384.1 50 1e-08 25.1 1.4 1 1 2.4e-09 1.9e-08 24.2 0.0 2 39 6 44 5 50 0.93 # 6523 # 6999 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.623 1_11 - 209 HTH_23 PF13384.1 50 4.3e-07 19.9 0.1 1 1 5.4e-08 4.3e-07 19.9 0.1 9 37 176 204 169 207 0.89 # 8645 # 9271 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.596 1_11 - 209 HTH_7 PF02796.10 45 5.3e-07 19.8 0.1 1 1 3.3e-08 5.3e-07 19.8 0.1 19 44 182 207 171 208 0.88 # 8645 # 9271 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.596 1_11 - 209 HTH_29 PF13551.1 112 1.2e-05 15.8 0.1 1 1 1.5e-06 1.2e-05 15.8 0.1 1 32 174 204 174 207 0.92 # 8645 # 9271 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.596 1_7 - 159 HTH_29 PF13551.1 112 1.4e-05 15.6 1.9 1 1 5.4e-06 4.3e-05 14.0 1.9 1 82 11 96 11 151 0.79 # 6523 # 6999 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.623 1_6 - 427 VirE PF05272.6 198 3.1e-49 157.4 0.0 1 1 2.6e-50 4.2e-49 157.0 0.0 1 198 129 323 129 323 0.90 # 4725 # 6005 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.535 1_7 - 159 HTH_28 PF13518.1 52 2.7e-07 20.9 0.0 1 1 7.2e-08 5.8e-07 19.9 0.0 1 34 10 44 10 54 0.91 # 6523 # 6999 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.623 1_11 - 209 HTH_28 PF13518.1 52 3e-06 17.6 0.1 1 1 1e-06 8.3e-06 16.2 0.1 4 32 176 204 174 207 0.92 # 8645 # 9271 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.596 1_7 - 159 HTH_Tnp_ISL3 PF13542.1 52 1.2e-05 14.9 0.3 1 2 7.6e-06 0.00012 11.6 0.0 28 49 23 44 11 47 0.84 # 6523 # 6999 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.623 1_7 - 159 HTH_Tnp_ISL3 PF13542.1 52 1.2e-05 14.9 0.3 2 2 0.02 0.31 0.7 0.1 11 25 116 130 116 131 0.91 # 6523 # 6999 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.623 1_7 - 159 MerR PF00376.18 38 0.00012 12.0 0.0 1 1 1.5e-05 0.00025 11.0 0.0 5 19 28 42 24 47 0.92 # 6523 # 6999 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.623 1_7 - 159 CENP-B_N PF04218.8 53 1.7e-05 14.6 0.0 1 1 2.5e-06 3.9e-05 13.4 0.0 22 45 22 45 3 48 0.83 # 6523 # 6999 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.623 1_7 - 159 TrmB PF01978.14 68 0.00014 12.0 0.0 1 1 2.1e-05 0.00034 10.7 0.0 18 44 17 44 13 46 0.87 # 6523 # 6999 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.623 1_11 - 209 LacI PF00356.16 46 7.5e-05 12.7 0.0 1 1 1.2e-05 0.0002 11.4 0.0 4 19 189 204 188 208 0.90 # 8645 # 9271 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.596 1_11 - 209 AAA_31 PF13614.1 157 9.5e-05 12.7 0.0 1 1 8.5e-06 0.00014 12.2 0.0 91 129 65 104 39 111 0.86 # 8645 # 9271 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.596 # # Program: hmmsearch # Version: 3.1b1 (May 2013) # Pipeline mode: SEARCH # Query file: /tmp/cffce02e-c443-4e05-9b2e-8e6d7d0f38bd # Target file: checkm_output/bins/pm2020/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm2020/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/cffce02e-c443-4e05-9b2e-8e6d7d0f38bd checkm_output/bins/pm2020/genes.faa # Current dir: /mnt/data/azomer/reads-for-assembly/files/output/allcontigs/output_1512029421078392887 # Date: Thu Nov 30 09:58:08 2017 # [ok]