# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 3_2 - 370 TrkA_N PF02254.13 116 5.2e-05 15.7 0.0 1 1 1.3e-06 9.3e-05 14.9 0.0 1 45 190 236 190 246 0.83 # 565 # 1674 # -1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.566 1_32 - 91 HTH_IclR PF09339.5 52 2.1e-06 19.8 0.0 1 1 1.1e-07 3.8e-06 18.9 0.0 4 43 9 47 8 49 0.92 # 22461 # 22733 # -1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.469 4_1 - 66 HTH_IclR PF09339.5 52 3.7e-05 15.7 1.1 1 1 1.2e-06 4.2e-05 15.6 0.3 12 46 26 60 24 60 0.88 # 109 # 306 # -1 # ID=4_1;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=3-4bp;gc_cont=0.561 3_2 - 370 ADH_N PF08240.7 109 2.5e-30 96.9 2.6 1 1 3.5e-32 2.5e-30 96.9 2.6 2 108 28 154 27 155 0.92 # 565 # 1674 # -1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.566 1_31 - 212 N6_Mtase PF02384.11 311 3e-07 22.2 0.0 1 1 5.7e-09 4.1e-07 21.7 0.0 3 97 71 166 69 205 0.73 # 21773 # 22408 # 1 # ID=1_31;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.511 1_44 - 313 HTH_38 PF13936.1 44 0.00016 13.7 0.0 1 1 1.2e-05 0.00042 12.4 0.0 5 33 133 162 130 164 0.89 # 27399 # 28337 # -1 # ID=1_44;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.546 1_34 - 393 HTH_38 PF13936.1 44 0.00028 12.9 0.0 1 1 1.5e-05 0.00052 12.0 0.0 5 33 120 149 116 157 0.83 # 22782 # 23960 # -1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.489 3_2 - 370 2-Hacid_dh_C PF02826.14 178 0.00036 12.2 0.1 1 1 9.6e-06 0.00069 11.2 0.1 34 76 185 228 173 240 0.82 # 565 # 1674 # -1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.566 4_1 - 66 HTH_34 PF13601.1 80 0.00026 13.5 0.0 1 1 4.2e-06 0.0003 13.3 0.0 2 42 18 60 17 65 0.87 # 109 # 306 # -1 # ID=4_1;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=3-4bp;gc_cont=0.561 3_4 - 219 TetR_N PF00440.18 47 2.1e-18 58.2 0.0 1 1 5e-20 3.6e-18 57.5 0.0 2 47 10 55 9 55 0.97 # 3049 # 3705 # 1 # ID=3_4;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.551 1_35 - 262 CbiA PF01656.18 195 6.2e-31 99.7 0.0 1 1 1.1e-32 7.7e-31 99.4 0.0 1 174 5 208 5 230 0.77 # 23964 # 24749 # -1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.527 1_49 - 372 tRNA_Me_trans PF03054.11 356 7.1e-05 13.9 0.0 1 2 2.5e-06 0.00018 12.5 0.0 2 63 52 110 51 133 0.80 # 31013 # 32128 # 1 # ID=1_49;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.520 1_49 - 372 tRNA_Me_trans PF03054.11 356 7.1e-05 13.9 0.0 2 2 0.068 4.9 -2.1 0.0 192 223 273 304 240 310 0.83 # 31013 # 32128 # 1 # ID=1_49;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.520 1_34 - 393 Sigma70_r4_2 PF08281.7 54 4.6e-05 15.3 0.0 1 2 0.027 2 0.5 0.0 22 38 115 131 103 131 0.76 # 22782 # 23960 # -1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.489 1_34 - 393 Sigma70_r4_2 PF08281.7 54 4.6e-05 15.3 0.0 2 2 1.8e-06 0.00013 13.9 0.0 17 48 127 158 122 161 0.91 # 22782 # 23960 # -1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.489 1_51 - 355 Rep_3 PF01051.16 222 6.3e-08 24.9 0.0 1 1 2.1e-09 1.5e-07 23.6 0.0 43 221 127 310 101 311 0.83 # 33594 # 34658 # -1 # ID=1_51;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.514 6_1 - 235 rve PF00665.21 120 2.4e-13 42.7 0.1 1 2 0.015 1.1 1.9 0.0 78 102 27 49 6 54 0.84 # 53 # 757 # -1 # ID=6_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.532 6_1 - 235 rve PF00665.21 120 2.4e-13 42.7 0.1 2 2 6.1e-14 4.4e-12 38.7 0.0 9 119 75 182 70 183 0.89 # 53 # 757 # -1 # ID=6_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.532 1_41 - 66 zf-TFIIB PF13453.1 41 0.00045 11.9 1.4 1 1 2.1e-05 0.0015 10.2 1.4 1 15 5 28 5 42 0.68 # 26635 # 26832 # -1 # ID=1_41;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.505 1_19 - 139 HTH_Tnp_1 PF01527.15 76 3.8e-05 16.1 0.1 1 2 0.0011 0.038 6.5 0.0 19 53 8 40 5 64 0.74 # 14744 # 15160 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.547 1_19 - 139 HTH_Tnp_1 PF01527.15 76 3.8e-05 16.1 0.1 2 2 0.00049 0.018 7.5 0.0 20 43 76 99 73 101 0.89 # 14744 # 15160 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.547 6_1 - 235 HTH_Tnp_1 PF01527.15 76 0.00018 13.9 0.3 1 1 1.1e-05 0.00039 12.9 0.3 4 51 6 58 4 63 0.79 # 53 # 757 # -1 # ID=6_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.532 1_49 - 372 TIGR02432 TIGR02432 189 2e-05 16.7 0.1 1 2 8.1e-06 0.00058 11.9 0.0 1 60 52 111 52 120 0.85 # 31013 # 32128 # 1 # ID=1_49;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.520 1_49 - 372 TIGR02432 TIGR02432 189 2e-05 16.7 0.1 2 2 0.01 0.74 1.8 0.0 140 165 235 260 212 262 0.78 # 31013 # 32128 # 1 # ID=1_49;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.520 6_1 - 235 DDE_3 PF13358.1 146 0.00049 12.3 0.0 1 1 2.1e-05 0.0015 10.7 0.0 32 90 82 141 59 146 0.87 # 53 # 757 # -1 # ID=6_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.532 1_35 - 262 MipZ PF09140.6 261 7e-11 34.1 0.0 1 2 3.4e-10 2.5e-08 25.7 0.0 2 59 4 62 3 85 0.80 # 23964 # 24749 # -1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.527 1_35 - 262 MipZ PF09140.6 261 7e-11 34.1 0.0 2 2 0.00031 0.023 6.2 0.0 89 122 117 150 89 166 0.74 # 23964 # 24749 # -1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.527 4_3 - 226 AAA_12 PF13087.1 200 7.7e-05 14.6 0.3 1 1 1.8e-06 0.00013 13.8 0.0 41 160 47 161 31 164 0.67 # 1857 # 2534 # 1 # ID=4_3;partial=01;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.506 1_44 - 313 Sigma70_r4 PF04545.11 50 9.7e-05 14.1 0.0 1 1 6.5e-06 0.00023 12.9 0.0 5 38 133 167 132 172 0.96 # 27399 # 28337 # -1 # ID=1_44;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.546 1_12 - 84 Sigma70_r4 PF04545.11 50 0.00035 12.4 0.0 1 1 1.4e-05 0.00052 11.8 0.0 16 38 17 39 13 44 0.88 # 10012 # 10263 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.508 1_6 - 100 Thi4 PF01946.12 230 0.00011 13.7 0.1 1 1 1.7e-06 0.00012 13.6 0.1 164 226 16 77 4 81 0.87 # 4557 # 4856 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.493 1_34 - 393 KorB PF08535.5 93 4.3e-32 102.7 0.2 1 1 4.4e-33 1.6e-31 100.8 0.0 1 92 134 222 134 223 0.97 # 22782 # 23960 # -1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.489 1_44 - 313 KorB PF08535.5 93 2.5e-07 23.3 1.2 1 1 1.1e-08 4.1e-07 22.6 0.2 3 90 149 232 147 235 0.85 # 27399 # 28337 # -1 # ID=1_44;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.546 1_12 - 84 HTH_37 PF13744.1 80 8.9e-12 37.2 0.2 1 1 1.6e-13 1.1e-11 36.9 0.2 17 78 7 67 6 69 0.96 # 10012 # 10263 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.508 1_32 - 91 HTH_43 PF09904.4 90 2.7e-12 38.9 0.0 1 1 4.1e-14 3e-12 38.7 0.0 2 77 2 81 1 89 0.87 # 22461 # 22733 # -1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.469 4_3 - 226 TIGR01074 TIGR01074 668 5.3e-06 17.0 0.0 1 1 7.7e-08 5.5e-06 16.9 0.0 533 615 128 206 40 221 0.78 # 1857 # 2534 # 1 # ID=4_3;partial=01;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.506 1_32 - 91 HTH_9 PF08221.6 62 0.00014 14.2 0.0 1 1 3e-06 0.00022 13.6 0.0 19 51 14 46 11 47 0.90 # 22461 # 22733 # -1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.469 1_32 - 91 HTH_1 PF00126.22 60 8.3e-05 14.8 0.0 1 1 1.7e-06 0.00012 14.2 0.0 24 51 33 61 30 76 0.77 # 22461 # 22733 # -1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.469 6_1 - 235 HTH_32 PF13565.1 77 9.3e-07 22.1 0.2 1 1 5.6e-08 4.1e-06 20.0 0.0 26 76 5 50 2 51 0.83 # 53 # 757 # -1 # ID=6_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.532 4_3 - 226 TIGR00609 TIGR00609 1175 0.00023 11.4 0.1 1 2 0.0029 0.21 1.6 0.0 728 746 145 163 95 169 0.89 # 1857 # 2534 # 1 # ID=4_3;partial=01;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.506 4_3 - 226 TIGR00609 TIGR00609 1175 0.00023 11.4 0.1 2 2 4.5e-05 0.0032 7.6 0.1 790 818 180 208 172 220 0.78 # 1857 # 2534 # 1 # ID=4_3;partial=01;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.506 2_3 - 498 A2L_zn_ribbon PF08792.5 33 0.0059 8.6 3.6 1 2 0.004 0.29 3.2 0.5 5 29 75 100 73 101 0.85 # 1876 # 3369 # 1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.608 2_3 - 498 A2L_zn_ribbon PF08792.5 33 0.0059 8.6 3.6 2 2 0.00068 0.049 5.7 0.1 2 13 439 450 439 453 0.85 # 1876 # 3369 # 1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.608 1_12 - 84 HTH_3 PF01381.17 55 1.1e-12 40.2 0.1 1 1 1.8e-14 1.3e-12 39.9 0.1 2 52 14 64 13 67 0.94 # 10012 # 10263 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.508 6_1 - 235 HTH_23 PF13384.1 50 4.4e-06 18.8 0.7 1 2 0.079 1.1 1.6 0.0 7 27 11 35 7 36 0.69 # 53 # 757 # -1 # ID=6_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.532 6_1 - 235 HTH_23 PF13384.1 50 4.4e-06 18.8 0.7 2 2 9.3e-06 0.00013 14.0 0.1 28 42 41 55 40 62 0.87 # 53 # 757 # -1 # ID=6_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.532 1_44 - 313 HTH_23 PF13384.1 50 6.2e-06 18.3 1.4 1 1 1.6e-06 2.3e-05 16.5 0.1 3 38 134 170 132 176 0.89 # 27399 # 28337 # -1 # ID=1_44;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.546 2_1 - 246 HTH_23 PF13384.1 50 8.8e-06 17.8 0.4 1 1 6.1e-07 8.8e-06 17.8 0.4 2 37 171 206 170 216 0.90 # 707 # 1444 # 1 # ID=2_1;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.673 1_34 - 393 HTH_23 PF13384.1 50 0.0001 14.4 0.4 1 1 4.3e-05 0.00062 11.9 0.0 4 35 122 154 119 161 0.81 # 22782 # 23960 # -1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.489 3_4 - 219 HTH_23 PF13384.1 50 0.0002 13.5 0.1 1 1 4.5e-05 0.00064 11.9 0.0 10 39 13 47 5 56 0.81 # 3049 # 3705 # 1 # ID=3_4;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.551 2_1 - 246 HTH_7 PF02796.10 45 5.8e-08 25.0 0.1 1 1 1.9e-09 1.4e-07 23.8 0.1 8 44 173 209 168 210 0.87 # 707 # 1444 # 1 # ID=2_1;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.673 2_3 - 498 Ribosomal_S27e PF01667.12 55 0.00038 12.5 1.1 1 1 1.4e-05 0.001 11.1 1.1 5 33 71 99 68 104 0.90 # 1876 # 3369 # 1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.608 1_12 - 84 HTH_19 PF12844.2 64 9.6e-09 27.7 0.0 1 1 1.8e-10 1.3e-08 27.3 0.0 3 54 12 63 10 65 0.86 # 10012 # 10263 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.508 2_3 - 498 zinc_ribbon_4 PF13717.1 36 0.016 7.4 5.2 1 2 0.00049 0.035 6.3 0.1 2 14 73 85 73 87 0.84 # 1876 # 3369 # 1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.608 2_3 - 498 zinc_ribbon_4 PF13717.1 36 0.016 7.4 5.2 2 2 0.0064 0.46 2.8 0.0 5 14 95 104 94 111 0.81 # 1876 # 3369 # 1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.608 3_2 - 370 Met_10 PF02475.11 200 5.8e-05 15.2 0.0 1 1 1.4e-06 0.0001 14.4 0.0 98 143 183 229 178 305 0.81 # 565 # 1674 # -1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.566 6_1 - 235 DDE_Tnp_IS66 PF03050.9 271 1.7e-12 39.5 0.3 1 1 3e-14 2.1e-12 39.2 0.3 5 132 10 144 6 174 0.87 # 53 # 757 # -1 # ID=6_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.532 1_49 - 372 PAPS_reduct PF01507.14 174 8.8e-12 37.6 0.3 1 2 0.014 1 1.6 0.0 2 17 53 68 52 91 0.76 # 31013 # 32128 # 1 # ID=1_49;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.520 1_49 - 372 PAPS_reduct PF01507.14 174 8.8e-12 37.6 0.3 2 2 1.6e-12 1.1e-10 34.0 0.1 58 172 154 279 144 281 0.84 # 31013 # 32128 # 1 # ID=1_49;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.520 1_35 - 262 TIGR01968 TIGR01968 261 4.1e-09 28.2 0.2 1 2 5e-07 3.6e-05 15.3 0.1 2 39 3 41 2 45 0.84 # 23964 # 24749 # -1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.527 1_35 - 262 TIGR01968 TIGR01968 261 4.1e-09 28.2 0.2 2 2 1e-05 0.00072 11.0 0.0 105 134 120 149 111 209 0.82 # 23964 # 24749 # -1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.527 3_4 - 219 HTH_psq PF05225.11 45 2.7e-05 16.2 0.0 1 2 1.4e-05 0.00098 11.2 0.0 5 39 10 47 6 52 0.84 # 3049 # 3705 # 1 # ID=3_4;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.551 3_4 - 219 HTH_psq PF05225.11 45 2.7e-05 16.2 0.0 2 2 0.0074 0.53 2.4 0.0 12 22 79 89 77 93 0.87 # 3049 # 3705 # 1 # ID=3_4;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.551 6_1 - 235 HTH_28 PF13518.1 52 4.2e-05 16.0 1.2 1 1 5.1e-06 0.00018 14.0 1.2 22 36 40 54 13 55 0.76 # 53 # 757 # -1 # ID=6_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.532 2_1 - 246 HTH_28 PF13518.1 52 0.00023 13.7 0.7 1 1 6.3e-06 0.00023 13.7 0.7 1 33 175 207 175 209 0.95 # 707 # 1444 # 1 # ID=2_1;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.673 3_4 - 219 HTH_Tnp_1_2 PF13022.1 142 0.00015 14.1 0.0 1 1 3.4e-06 0.00025 13.3 0.0 24 77 13 64 2 68 0.78 # 3049 # 3705 # 1 # ID=3_4;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.551 4_1 - 66 HTH_24 PF13412.1 48 1.1e-05 17.3 0.0 1 1 1.2e-06 1.7e-05 16.7 0.0 4 45 17 60 15 61 0.93 # 109 # 306 # -1 # ID=4_1;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=3-4bp;gc_cont=0.561 1_34 - 393 HTH_24 PF13412.1 48 1.3e-05 17.0 0.3 1 2 0.0008 0.012 7.6 0.2 1 29 104 131 104 131 0.90 # 22782 # 23960 # -1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.489 1_34 - 393 HTH_24 PF13412.1 48 1.3e-05 17.0 0.3 2 2 0.0012 0.017 7.0 0.0 20 41 139 160 138 161 0.90 # 22782 # 23960 # -1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.489 3_4 - 219 HTH_24 PF13412.1 48 4.3e-05 15.3 0.0 1 1 1.4e-05 0.0002 13.2 0.0 15 40 23 47 13 50 0.84 # 3049 # 3705 # 1 # ID=3_4;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.551 1_32 - 91 HTH_24 PF13412.1 48 0.00021 13.2 0.1 1 1 2.2e-05 0.00032 12.6 0.1 5 44 10 49 7 49 0.93 # 22461 # 22733 # -1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.469 1_12 - 84 HTH_24 PF13412.1 48 0.00026 12.8 1.0 1 1 3.5e-05 0.00051 11.9 0.1 16 35 20 39 17 40 0.91 # 10012 # 10263 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.508 3_2 - 370 MinC_C PF03775.11 105 0.0004 12.5 0.8 1 2 5e-05 0.0036 9.4 0.1 23 95 175 249 167 253 0.88 # 565 # 1674 # -1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.566 3_2 - 370 MinC_C PF03775.11 105 0.0004 12.5 0.8 2 2 0.018 1.3 1.2 0.0 15 78 277 343 267 365 0.69 # 565 # 1674 # -1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.566 1_12 - 84 HTH_31 PF13560.1 64 5.4e-09 28.7 0.2 1 1 9.3e-11 6.7e-09 28.4 0.2 2 59 9 65 8 70 0.93 # 10012 # 10263 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.508 4_3 - 226 UvrD_C_2 PF13538.1 104 2.7e-11 36.0 0.0 1 1 7.5e-13 5.4e-11 35.1 0.0 46 99 123 196 83 200 0.67 # 1857 # 2534 # 1 # ID=4_3;partial=01;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.506 1_35 - 262 AAA_25 PF13481.1 194 9.1e-05 14.3 0.0 1 1 2.1e-06 0.00015 13.6 0.0 42 108 12 67 11 134 0.79 # 23964 # 24749 # -1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.527 4_3 - 226 Viral_helicase1 PF01443.13 234 0.0005 12.0 0.0 1 1 1.2e-05 0.00088 11.2 0.0 172 227 135 195 85 200 0.73 # 1857 # 2534 # 1 # ID=4_3;partial=01;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.506 1_32 - 91 Mga PF05043.8 87 0.00026 13.8 0.1 1 1 4.4e-06 0.00032 13.5 0.1 17 55 9 47 2 62 0.89 # 22461 # 22733 # -1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.469 2_7 - 335 Transposase_20 PF02371.11 87 7.9e-25 79.3 0.2 1 1 2.3e-26 1.7e-24 78.3 0.2 2 78 210 286 209 296 0.94 # 5437 # 6441 # -1 # ID=2_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.490 1_23 - 206 AAA_33 PF13671.1 143 0.00024 13.4 0.0 1 1 4.4e-06 0.00031 13.1 0.0 3 36 12 48 11 166 0.84 # 16694 # 17311 # -1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.508 3_4 - 219 CENP-B_N PF04218.8 53 0.00036 12.4 0.0 1 1 1.2e-05 0.00083 11.3 0.0 26 51 28 53 23 55 0.91 # 3049 # 3705 # 1 # ID=3_4;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.551 1_24 - 478 DNA_methylase PF00145.12 335 6.9e-11 34.2 0.0 1 2 1.9e-11 1.4e-09 29.9 0.0 71 160 228 320 198 324 0.82 # 17366 # 18799 # -1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.533 1_24 - 478 DNA_methylase PF00145.12 335 6.9e-11 34.2 0.0 2 2 0.0054 0.39 2.1 0.0 290 330 407 448 342 452 0.73 # 17366 # 18799 # -1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.533 1_49 - 372 ATP_bind_3 PF01171.15 182 5.8e-05 15.1 0.1 1 3 3.9e-05 0.0028 9.6 0.0 1 61 52 112 52 133 0.79 # 31013 # 32128 # 1 # ID=1_49;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.520 1_49 - 372 ATP_bind_3 PF01171.15 182 5.8e-05 15.1 0.1 2 3 0.091 6.6 -1.4 0.0 75 94 208 227 204 236 0.73 # 31013 # 32128 # 1 # ID=1_49;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.520 1_49 - 372 ATP_bind_3 PF01171.15 182 5.8e-05 15.1 0.1 3 3 0.0052 0.37 2.7 0.0 131 161 229 260 212 262 0.73 # 31013 # 32128 # 1 # ID=1_49;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.520 2_3 - 498 zinc_ribbon_5 PF13719.1 37 0.0015 10.6 2.7 1 2 0.00031 0.023 6.8 0.0 2 14 73 85 72 87 0.83 # 1876 # 3369 # 1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.608 2_3 - 498 zinc_ribbon_5 PF13719.1 37 0.0015 10.6 2.7 2 2 0.0048 0.35 3.0 0.0 5 14 95 104 94 113 0.81 # 1876 # 3369 # 1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.608 1_49 - 372 TIGR00420 TIGR00420 351 0.00092 10.2 0.0 1 2 8.7e-05 0.0063 7.5 0.0 2 66 52 112 51 126 0.79 # 31013 # 32128 # 1 # ID=1_49;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.520 1_49 - 372 TIGR00420 TIGR00420 351 0.00092 10.2 0.0 2 2 0.012 0.9 0.4 0.0 191 223 273 305 245 312 0.89 # 31013 # 32128 # 1 # ID=1_49;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.520 6_1 - 235 DDE_Tnp_IS240 PF13610.1 140 5.5e-53 171.2 0.0 1 1 1.1e-54 7.6e-53 170.7 0.0 4 139 75 212 73 213 0.99 # 53 # 757 # -1 # ID=6_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.532 1_12 - 84 HTH_26 PF13443.1 63 4.8e-05 16.0 0.0 1 1 1.9e-06 6.8e-05 15.5 0.0 10 53 21 63 9 65 0.82 # 10012 # 10263 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.508 3_4 - 219 HTH_26 PF13443.1 63 0.00046 12.9 0.0 1 1 2.5e-05 0.00091 11.9 0.0 5 40 16 52 14 61 0.81 # 3049 # 3705 # 1 # ID=3_4;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.551 2_3 - 498 Zn-ribbon_8 PF09723.5 42 0.027 7.0 9.5 1 2 0.00051 0.037 6.5 5.2 7 35 75 101 75 105 0.89 # 1876 # 3369 # 1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.608 2_3 - 498 Zn-ribbon_8 PF09723.5 42 0.027 7.0 9.5 2 2 0.016 1.2 1.7 0.1 25 37 439 450 430 459 0.71 # 1876 # 3369 # 1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.608 1_32 - 91 HTH_11 PF08279.7 55 0.00056 12.0 0.0 1 1 1e-05 0.00075 11.6 0.0 1 46 9 54 9 70 0.77 # 22461 # 22733 # -1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.469 4_1 - 66 MarR_2 PF12802.2 62 4.4e-06 18.8 0.1 1 1 1e-07 7.3e-06 18.1 0.1 12 49 23 60 4 60 0.84 # 109 # 306 # -1 # ID=4_1;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=3-4bp;gc_cont=0.561 4_1 - 66 HTH_5 PF01022.15 47 1.8e-10 32.8 0.2 1 1 5e-12 1.8e-10 32.8 0.2 1 43 15 60 15 60 0.93 # 109 # 306 # -1 # ID=4_1;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=3-4bp;gc_cont=0.561 1_32 - 91 HTH_5 PF01022.15 47 1.1e-06 20.7 0.1 1 1 4.5e-08 1.6e-06 20.2 0.1 6 41 12 48 8 49 0.91 # 22461 # 22733 # -1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.469 4_1 - 66 TrmB PF01978.14 68 5.8e-05 15.3 0.0 1 1 1.1e-06 8e-05 14.8 0.0 12 50 20 60 17 61 0.92 # 109 # 306 # -1 # ID=4_1;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=3-4bp;gc_cont=0.561 2_4 - 101 TIGR01455 TIGR01455 442 1.8e-33 108.0 0.5 1 1 2.9e-35 2.1e-33 107.7 0.5 1 77 6 81 6 83 0.96 # 3545 # 3847 # -1 # ID=2_4;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.578 1_32 - 91 HTH_Mga PF08280.6 59 4e-06 19.0 0.0 1 1 6.5e-08 4.6e-06 18.8 0.0 2 54 5 57 4 62 0.93 # 22461 # 22733 # -1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.469 4_1 - 66 HTH_20 PF12840.2 61 1.4e-15 49.4 0.5 1 1 2.3e-17 1.7e-15 49.1 0.5 3 52 9 60 5 60 0.94 # 109 # 306 # -1 # ID=4_1;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=3-4bp;gc_cont=0.561 1_41 - 66 DnaJ_CXXCXGXG PF00684.14 66 1.4e-08 27.2 3.1 1 1 5.4e-10 1.9e-08 26.7 3.1 16 54 4 45 1 54 0.80 # 26635 # 26832 # -1 # ID=1_41;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.505 1_27 - 169 DnaJ_CXXCXGXG PF00684.14 66 0.00019 13.9 0.2 1 1 9.3e-06 0.00033 13.2 0.2 43 65 5 30 2 45 0.65 # 19630 # 20136 # -1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.531 4_3 - 226 UvrD_C PF13361.1 351 2.3e-11 36.1 0.0 1 1 4e-13 2.9e-11 35.8 0.0 237 347 91 201 35 205 0.74 # 1857 # 2534 # 1 # ID=4_3;partial=01;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.506 1_35 - 262 ArsA_ATPase PF02374.10 305 4.2e-06 18.4 0.0 1 2 3e-07 2.2e-05 16.0 0.0 7 40 9 43 2 79 0.84 # 23964 # 24749 # -1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.527 1_35 - 262 ArsA_ATPase PF02374.10 305 4.2e-06 18.4 0.0 2 2 0.029 2.1 -0.3 0.0 124 136 124 136 106 143 0.79 # 23964 # 24749 # -1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.527 1_35 - 262 AAA_31 PF13614.1 157 8.9e-11 34.4 0.0 1 1 2.7e-12 2e-10 33.3 0.0 1 149 3 157 3 164 0.79 # 23964 # 24749 # -1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.527 2_5 - 272 Pterin_bind PF00809.17 210 2e-60 196.1 0.0 1 1 3.4e-62 2.4e-60 195.9 0.0 1 209 10 216 10 217 0.98 # 3934 # 4749 # -1 # ID=2_5;partial=00;start_type=ATG;rbs_motif=AGxAG;rbs_spacer=5-10bp;gc_cont=0.609 3_2 - 370 ADH_zinc_N PF00107.21 130 9.3e-24 75.9 0.2 1 1 2e-25 1.5e-23 75.3 0.2 1 128 197 330 197 332 0.90 # 565 # 1674 # -1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.566 3_2 - 370 ADH_zinc_N_2 PF13602.1 127 6.5e-06 19.5 0.0 1 1 2.1e-07 1.5e-05 18.4 0.0 2 121 231 362 230 363 0.63 # 565 # 1674 # -1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.566 # # Program: hmmsearch # Version: 3.1b1 (May 2013) # Pipeline mode: SEARCH # Query file: /tmp/a151fcf2-5620-49d1-87ba-d2949006cf8b # Target file: checkm_output/bins/pm2014/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm2014/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/a151fcf2-5620-49d1-87ba-d2949006cf8b checkm_output/bins/pm2014/genes.faa # Current dir: /mnt/data/azomer/reads-for-assembly/files/output/allcontigs/output_1512029421078392887 # Date: Thu Nov 30 09:58:07 2017 # [ok]