# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_39 - 457 KaiC PF06745.8 227 1.1e-07 24.2 0.0 1 1 2e-09 2.3e-07 23.2 0.0 5 71 176 263 172 280 0.83 # 29572 # 30942 # 1 # ID=1_39;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.472 1_7 - 758 ABC_tran PF00005.22 137 2.2e-05 17.9 0.3 1 1 9.3e-07 0.00011 15.7 0.0 9 40 191 222 187 243 0.85 # 3082 # 5355 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.454 1_18 - 421 HHH_5 PF14520.1 60 9.4e-05 15.7 0.0 1 1 2.9e-06 0.00034 13.9 0.0 9 45 182 218 171 236 0.86 # 15504 # 16766 # -1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.496 1_91 - 231 N6_Mtase PF02384.11 311 3.1e-09 29.4 0.0 1 1 4.1e-11 4.7e-09 28.8 0.0 23 122 96 201 89 210 0.80 # 72006 # 72698 # 1 # ID=1_91;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.492 1_57 - 848 FtsK_SpoIIIE PF01580.13 205 0.00049 12.7 0.0 1 1 8.6e-06 0.00098 11.7 0.0 36 63 446 474 432 479 0.84 # 47728 # 50271 # -1 # ID=1_57;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.483 1_7 - 758 MobB PF03205.9 140 3.6e-05 16.6 0.0 1 1 2e-06 0.00011 15.0 0.0 4 34 197 227 195 245 0.82 # 3082 # 5355 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.454 1_73 - 287 MobB PF03205.9 140 0.00048 12.9 0.0 1 1 1.8e-05 0.001 11.9 0.0 7 49 33 73 27 78 0.91 # 60980 # 61840 # 1 # ID=1_73;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.431 1_8 - 1669 AAA_19 PF13245.1 76 5.1e-09 28.9 0.1 1 1 4.9e-10 1.9e-08 27.1 0.1 2 76 540 608 539 608 0.92 # 5355 # 10361 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.476 1_39 - 457 AAA_19 PF13245.1 76 0.00042 13.2 0.0 1 1 7.9e-05 0.003 10.4 0.0 9 47 209 244 202 271 0.82 # 29572 # 30942 # 1 # ID=1_39;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.472 1_73 - 287 AAA_19 PF13245.1 76 0.00045 13.1 0.0 1 2 0.0018 0.067 6.1 0.1 16 37 32 53 15 63 0.75 # 60980 # 61840 # 1 # ID=1_73;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.431 1_73 - 287 AAA_19 PF13245.1 76 0.00045 13.1 0.0 2 2 0.0078 0.3 4.1 0.0 10 34 142 166 135 179 0.79 # 60980 # 61840 # 1 # ID=1_73;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.431 1_73 - 287 CbiA PF01656.18 195 1.1e-21 70.2 0.0 1 1 1.9e-23 2.1e-21 69.3 0.0 2 170 29 226 28 251 0.73 # 60980 # 61840 # 1 # ID=1_73;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.431 1_7 - 758 KTI12 PF08433.5 270 0.0017 10.7 4.0 1 2 3e-05 0.0034 9.7 0.0 5 35 197 227 196 236 0.88 # 3082 # 5355 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.454 1_7 - 758 KTI12 PF08433.5 270 0.0017 10.7 4.0 2 2 0.038 4.3 -0.5 2.2 162 248 635 726 592 743 0.60 # 3082 # 5355 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.454 1_28 - 72 zf-ribbon_3 PF13248.1 26 6.1e-05 15.3 1.3 1 2 2.9e-05 0.0017 10.8 0.2 18 24 10 16 2 19 0.73 # 21592 # 21807 # 1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.426 1_28 - 72 zf-ribbon_3 PF13248.1 26 6.1e-05 15.3 1.3 2 2 0.005 0.29 3.6 0.1 17 23 57 63 51 66 0.72 # 21592 # 21807 # 1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.426 1_21 - 146 zf-ribbon_3 PF13248.1 26 0.0013 11.1 3.8 1 3 3.1e-05 0.0017 10.7 0.7 14 24 7 17 4 19 0.73 # 18053 # 18490 # 1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.530 1_21 - 146 zf-ribbon_3 PF13248.1 26 0.0013 11.1 3.8 2 3 0.00023 0.013 7.9 4.1 5 22 12 29 9 31 0.73 # 18053 # 18490 # 1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.530 1_21 - 146 zf-ribbon_3 PF13248.1 26 0.0013 11.1 3.8 3 3 0.044 2.5 0.6 0.1 3 11 24 32 22 38 0.77 # 18053 # 18490 # 1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.530 1_39 - 457 TIGR00416 TIGR00416 454 1.2e-06 20.2 0.1 1 1 9.7e-08 5.5e-06 18.1 0.1 73 218 190 368 146 374 0.83 # 29572 # 30942 # 1 # ID=1_39;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.472 1_7 - 758 TIGR00416 TIGR00416 454 0.00042 11.9 0.0 1 1 1.3e-05 0.00074 11.0 0.0 97 131 196 232 190 237 0.79 # 3082 # 5355 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.454 1_8 - 1669 AAA_30 PF13604.1 196 4.4e-64 208.7 13.4 1 3 5.4e-49 6.1e-47 152.8 0.1 2 188 533 713 532 720 0.97 # 5355 # 10361 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.476 1_8 - 1669 AAA_30 PF13604.1 196 4.4e-64 208.7 13.4 2 3 0.073 8.3 -1.0 0.3 32 83 988 1046 984 1054 0.77 # 5355 # 10361 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.476 1_8 - 1669 AAA_30 PF13604.1 196 4.4e-64 208.7 13.4 3 3 1.1e-20 1.2e-18 60.4 3.9 7 185 1133 1310 1128 1318 0.90 # 5355 # 10361 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.476 1_7 - 758 TraG-D_C PF12696.2 128 1.3e-18 60.2 1.3 1 1 1.7e-20 1.9e-18 59.7 0.0 6 127 429 546 425 547 0.88 # 3082 # 5355 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.454 1_73 - 287 MipZ PF09140.6 261 9.3e-12 37.6 0.1 1 2 9.7e-10 1.1e-07 24.2 0.0 3 39 28 64 26 71 0.92 # 60980 # 61840 # 1 # ID=1_73;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.431 1_73 - 287 MipZ PF09140.6 261 9.3e-12 37.6 0.1 2 2 8.5e-06 0.00097 11.3 0.0 91 127 134 172 114 187 0.86 # 60980 # 61840 # 1 # ID=1_73;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.431 1_21 - 146 zf-dskA_traR PF01258.12 36 0.02 7.8 8.8 1 2 0.00073 0.084 5.8 5.9 5 34 11 33 7 35 0.83 # 18053 # 18490 # 1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.530 1_21 - 146 zf-dskA_traR PF01258.12 36 0.02 7.8 8.8 2 2 0.067 7.6 -0.4 0.0 4 17 110 124 108 126 0.79 # 18053 # 18490 # 1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.530 1_7 - 758 AAA PF00004.24 132 0.00014 15.1 0.0 1 1 5.7e-06 0.00065 13.0 0.0 2 31 197 231 196 255 0.67 # 3082 # 5355 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.454 1_74 - 464 KorB PF08535.5 93 5.4e-12 38.9 0.0 1 1 1.1e-13 1.3e-11 37.7 0.0 4 77 160 232 157 249 0.81 # 61837 # 63228 # 1 # ID=1_74;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.419 1_8 - 1669 Herpes_Helicase PF02689.9 819 2.3e-05 15.3 0.6 1 2 0.033 3.8 -1.9 0.0 64 80 553 569 488 571 0.61 # 5355 # 10361 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.476 1_8 - 1669 Herpes_Helicase PF02689.9 819 2.3e-05 15.3 0.6 2 2 5e-07 5.7e-05 14.0 0.1 724 788 897 963 850 992 0.84 # 5355 # 10361 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.476 1_7 - 758 cobW PF02492.14 178 0.00011 14.8 0.1 1 1 2.8e-06 0.00032 13.3 0.0 4 34 197 227 195 235 0.87 # 3082 # 5355 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.454 1_7 - 758 AAA_16 PF13191.1 185 3.9e-07 23.3 0.0 1 1 1.2e-08 1.3e-06 21.5 0.0 20 56 189 226 181 261 0.80 # 3082 # 5355 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.454 1_7 - 758 AAA_22 PF13401.1 131 7e-06 19.3 0.0 1 1 6.1e-07 3.5e-05 17.1 0.0 6 48 195 232 190 275 0.84 # 3082 # 5355 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.454 1_8 - 1669 AAA_22 PF13401.1 131 0.0016 11.7 1.6 1 2 0.001 0.06 6.6 0.3 10 124 555 654 550 660 0.68 # 5355 # 10361 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.476 1_8 - 1669 AAA_22 PF13401.1 131 0.0016 11.7 1.6 2 2 0.028 1.6 2.0 0.0 15 102 1104 1233 1102 1258 0.65 # 5355 # 10361 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.476 1_112 - 283 Methyltransf_27 PF13708.1 194 1.1e-65 213.9 1.4 1 1 2.6e-67 1.5e-65 213.5 1.1 2 194 84 278 83 278 0.92 # 82120 # 82968 # 1 # ID=1_112;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.446 1_20 - 180 Methyltransf_27 PF13708.1 194 0.00032 13.4 0.0 1 2 2.3e-05 0.0013 11.4 0.0 16 69 18 71 3 78 0.88 # 17517 # 18056 # 1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.444 1_20 - 180 Methyltransf_27 PF13708.1 194 0.00032 13.4 0.0 2 2 0.042 2.4 0.7 0.0 48 81 71 104 68 111 0.87 # 17517 # 18056 # 1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.444 1_7 - 758 AAA_28 PF13521.1 163 6.5e-05 16.0 0.0 1 1 1.6e-06 0.00018 14.6 0.0 2 44 196 243 195 261 0.73 # 3082 # 5355 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.454 1_21 - 146 A2L_zn_ribbon PF08792.5 33 0.00036 13.1 2.1 1 2 6.6e-06 0.00075 12.1 0.2 15 28 3 16 1 17 0.92 # 18053 # 18490 # 1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.530 1_21 - 146 A2L_zn_ribbon PF08792.5 33 0.00036 13.1 2.1 2 2 0.04 4.6 0.0 0.1 5 13 25 33 23 37 0.76 # 18053 # 18490 # 1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.530 1_81 - 139 HTH_3 PF01381.17 55 3.9e-07 23.0 0.0 1 1 4.8e-09 5.4e-07 22.5 0.0 4 53 86 135 83 137 0.89 # 66138 # 66554 # -1 # ID=1_81;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.468 1_6 - 117 HARE-HTH PF05066.8 72 0.00075 13.0 0.0 1 1 1.1e-05 0.0012 12.3 0.0 13 44 24 57 17 70 0.82 # 2729 # 3079 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.450 1_81 - 139 HTH_19 PF12844.2 64 9.2e-07 22.0 0.0 1 1 1.2e-08 1.4e-06 21.4 0.0 7 56 86 135 80 138 0.89 # 66138 # 66554 # -1 # ID=1_81;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.468 1_21 - 146 zinc_ribbon_4 PF13717.1 36 0.0099 8.7 7.4 1 3 0.013 0.77 2.7 0.4 28 32 12 16 11 20 0.63 # 18053 # 18490 # 1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.530 1_21 - 146 zinc_ribbon_4 PF13717.1 36 0.0099 8.7 7.4 2 3 0.00014 0.0079 9.1 1.3 23 33 21 31 18 34 0.87 # 18053 # 18490 # 1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.530 1_21 - 146 zinc_ribbon_4 PF13717.1 36 0.0099 8.7 7.4 3 3 0.00039 0.022 7.6 1.6 2 15 23 36 23 38 0.72 # 18053 # 18490 # 1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.530 1_101 - 173 zinc_ribbon_4 PF13717.1 36 0.019 7.8 5.8 1 2 0.0041 0.24 4.3 0.7 4 13 60 69 59 73 0.91 # 77218 # 77736 # 1 # ID=1_101;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.484 1_101 - 173 zinc_ribbon_4 PF13717.1 36 0.019 7.8 5.8 2 2 0.0023 0.13 5.1 0.4 4 10 81 87 79 90 0.75 # 77218 # 77736 # 1 # ID=1_101;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.484 1_6 - 117 IF2_N PF04760.10 54 0.00016 14.4 0.4 1 3 0.00095 0.11 5.4 0.0 3 13 30 40 29 47 0.88 # 2729 # 3079 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.450 1_6 - 117 IF2_N PF04760.10 54 0.00016 14.4 0.4 2 3 0.0011 0.13 5.1 0.0 34 51 79 96 76 99 0.88 # 2729 # 3079 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.450 1_6 - 117 IF2_N PF04760.10 54 0.00016 14.4 0.4 3 3 0.038 4.3 0.3 0.0 3 15 102 114 100 116 0.62 # 2729 # 3079 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.450 1_7 - 758 Arch_ATPase PF01637.13 234 0.00077 12.3 0.0 1 1 1.9e-05 0.0022 10.8 0.0 18 55 191 228 186 244 0.79 # 3082 # 5355 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.454 1_7 - 758 AAA_5 PF07728.9 139 8.2e-05 15.5 0.1 1 2 5.7e-06 0.00065 12.5 0.0 2 24 196 221 195 230 0.80 # 3082 # 5355 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.454 1_7 - 758 AAA_5 PF07728.9 139 8.2e-05 15.5 0.1 2 2 0.088 10 -1.0 0.0 22 74 582 642 579 647 0.73 # 3082 # 5355 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.454 1_7 - 758 TrwB_AAD_bind PF10412.4 386 1.9e-113 372.0 0.0 1 1 2.4e-115 2.7e-113 371.5 0.0 2 386 180 566 179 566 0.99 # 3082 # 5355 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.454 1_73 - 287 TIGR01968 TIGR01968 261 2e-10 33.2 0.1 1 2 1.2e-07 1.4e-05 17.3 0.0 5 40 29 64 26 69 0.89 # 60980 # 61840 # 1 # ID=1_73;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.431 1_73 - 287 TIGR01968 TIGR01968 261 2e-10 33.2 0.1 2 2 1.5e-06 0.00018 13.7 0.0 105 144 135 174 132 195 0.83 # 60980 # 61840 # 1 # ID=1_73;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.431 1_7 - 758 AAA_18 PF13238.1 129 1.2e-06 21.9 0.0 1 1 6.1e-08 7e-06 19.5 0.0 1 39 196 258 196 327 0.68 # 3082 # 5355 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.454 1_74 - 464 Methyltransf_3 PF01596.12 205 0.0003 12.9 0.0 1 1 5e-06 0.00057 12.0 0.0 103 180 85 167 64 172 0.78 # 61837 # 63228 # 1 # ID=1_74;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.419 1_18 - 421 IMS_HHH PF11798.3 32 8.2e-10 31.5 0.1 1 1 2.2e-11 2.5e-09 29.9 0.0 2 32 169 199 168 199 0.93 # 15504 # 16766 # -1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.496 1_91 - 231 FliH PF02108.11 128 2.3e-05 17.4 0.0 1 1 4.2e-07 4.8e-05 16.4 0.0 79 120 112 153 106 156 0.92 # 72006 # 72698 # 1 # ID=1_91;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.492 1_7 - 758 DUF258 PF03193.11 161 0.00014 14.2 0.0 1 1 2.6e-06 0.0003 13.1 0.0 34 62 192 220 183 232 0.82 # 3082 # 5355 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.454 1_7 - 758 DUF87 PF01935.12 229 3.9e-08 26.4 0.2 1 2 5.7e-08 3.3e-06 20.1 0.0 26 75 196 244 193 308 0.84 # 3082 # 5355 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.454 1_7 - 758 DUF87 PF01935.12 229 3.9e-08 26.4 0.2 2 2 0.0082 0.47 3.3 0.8 109 174 625 694 616 739 0.64 # 3082 # 5355 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.454 1_57 - 848 DUF87 PF01935.12 229 7.4e-06 19.0 0.0 1 1 2.9e-07 1.6e-05 17.8 0.0 8 108 432 527 427 619 0.71 # 47728 # 50271 # -1 # ID=1_57;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.483 1_39 - 457 DnaB_C PF03796.10 259 5.4e-110 359.3 0.2 1 1 6.3e-112 7.2e-110 358.9 0.2 1 257 192 449 192 451 0.98 # 29572 # 30942 # 1 # ID=1_39;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.472 1_93 - 165 ATP-synt_8 PF00895.15 54 0.009 9.4 5.0 1 2 0.0026 0.29 4.5 2.1 10 27 10 26 6 34 0.59 # 72961 # 73455 # 1 # ID=1_93;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.354 1_93 - 165 ATP-synt_8 PF00895.15 54 0.009 9.4 5.0 2 2 0.002 0.23 4.9 0.0 9 36 54 81 45 88 0.86 # 72961 # 73455 # 1 # ID=1_93;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.354 1_73 - 287 LpxK PF02606.9 326 5.3e-05 15.3 0.1 1 2 1.2e-06 0.00014 14.0 0.1 17 71 7 60 4 61 0.92 # 60980 # 61840 # 1 # ID=1_73;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.431 1_73 - 287 LpxK PF02606.9 326 5.3e-05 15.3 0.1 2 2 0.073 8.3 -1.7 0.0 232 248 181 197 137 280 0.59 # 60980 # 61840 # 1 # ID=1_73;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.431 1_7 - 758 MMR_HSR1 PF01926.18 116 6e-06 19.3 0.0 1 1 2.4e-07 2.8e-05 17.2 0.0 2 25 196 224 195 269 0.73 # 3082 # 5355 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.454 1_7 - 758 Miro PF08477.8 119 0.00052 13.6 0.0 1 1 1.8e-05 0.002 11.7 0.0 2 57 196 251 195 274 0.74 # 3082 # 5355 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.454 1_81 - 139 HTH_31 PF13560.1 64 0.00016 14.9 0.0 1 1 2.2e-06 0.00025 14.3 0.0 8 59 85 135 80 137 0.90 # 66138 # 66554 # -1 # ID=1_81;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.468 1_8 - 1669 UvrD_C_2 PF13538.1 104 1e-11 38.1 1.1 1 2 3.6e-11 4.1e-09 29.7 0.2 2 103 857 960 856 961 0.78 # 5355 # 10361 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.476 1_8 - 1669 UvrD_C_2 PF13538.1 104 1e-11 38.1 1.1 2 2 0.00083 0.095 6.0 0.1 15 103 1493 1581 1481 1582 0.69 # 5355 # 10361 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.476 1_7 - 758 AAA_17 PF13207.1 121 6e-05 17.0 0.0 1 1 2.3e-06 0.00026 14.9 0.0 2 32 196 231 196 297 0.67 # 3082 # 5355 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.454 1_21 - 146 DZR PF12773.2 50 6.7e-05 15.8 1.9 1 1 1e-06 0.00012 15.0 1.9 1 21 12 32 4 47 0.60 # 18053 # 18490 # 1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.530 1_39 - 457 AAA_25 PF13481.1 194 1.5e-17 56.7 0.0 1 1 4e-19 2.3e-17 56.1 0.0 31 190 208 372 177 376 0.87 # 29572 # 30942 # 1 # ID=1_39;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.472 1_73 - 287 AAA_25 PF13481.1 194 0.00076 12.0 0.6 1 1 3.4e-05 0.0019 10.7 0.2 39 59 32 53 20 72 0.81 # 60980 # 61840 # 1 # ID=1_73;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.431 1_8 - 1669 Viral_helicase1 PF01443.13 234 3.7e-11 36.0 0.7 1 2 1.8e-08 1e-06 21.5 0.0 3 102 554 660 552 665 0.82 # 5355 # 10361 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.476 1_8 - 1669 Viral_helicase1 PF01443.13 234 3.7e-11 36.0 0.7 2 2 3.4e-05 0.0019 10.8 0.2 166 229 892 957 847 962 0.64 # 5355 # 10361 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.476 1_7 - 758 Viral_helicase1 PF01443.13 234 9.4e-05 15.1 0.0 1 1 4.2e-06 0.00024 13.7 0.0 4 36 199 228 196 239 0.82 # 3082 # 5355 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.454 1_79 - 93 DUF2779 PF11074.3 130 0.00059 13.0 0.0 1 1 5.6e-06 0.00064 12.9 0.0 5 57 16 68 12 89 0.82 # 65493 # 65771 # 1 # ID=1_79;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.398 1_7 - 758 AAA_33 PF13671.1 143 0.00019 14.4 0.0 1 1 5.5e-06 0.00063 12.7 0.0 3 25 197 219 196 260 0.90 # 3082 # 5355 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.454 1_7 - 758 ArgK PF03308.11 267 0.00021 13.2 0.0 1 1 3.7e-06 0.00043 12.2 0.0 32 59 196 223 185 230 0.84 # 3082 # 5355 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.454 1_7 - 758 T4SS-DNA_transf PF02534.9 469 1.3e-11 36.8 0.0 1 1 5.4e-12 6.2e-10 31.2 0.0 219 427 342 548 244 569 0.77 # 3082 # 5355 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.454 1_7 - 758 RNA_helicase PF00910.17 107 0.00055 13.2 0.0 1 1 1.7e-05 0.0019 11.5 0.0 2 26 197 221 196 257 0.82 # 3082 # 5355 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.454 1_7 - 758 NTPase_1 PF03266.10 168 0.00016 14.5 0.0 1 1 6.4e-06 0.00036 13.3 0.0 2 29 196 223 195 267 0.82 # 3082 # 5355 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.454 1_8 - 1669 NTPase_1 PF03266.10 168 0.002 10.9 3.0 1 2 0.0013 0.073 5.8 0.5 4 33 554 583 551 592 0.90 # 5355 # 10361 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.476 1_8 - 1669 NTPase_1 PF03266.10 168 0.002 10.9 3.0 2 2 0.0055 0.31 3.8 0.0 2 86 1147 1233 1146 1246 0.61 # 5355 # 10361 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.476 1_21 - 146 zinc_ribbon_5 PF13719.1 37 0.012 8.3 7.7 1 2 0.013 0.73 2.7 0.4 5 32 12 16 11 20 0.63 # 18053 # 18490 # 1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.530 1_21 - 146 zinc_ribbon_5 PF13719.1 37 0.012 8.3 7.7 2 2 0.0001 0.006 9.3 1.3 23 33 21 31 17 35 0.86 # 18053 # 18490 # 1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.530 1_101 - 173 zinc_ribbon_5 PF13719.1 37 0.084 5.7 7.6 1 1 0.039 2.2 1.1 7.6 4 33 60 87 59 88 0.82 # 77218 # 77736 # 1 # ID=1_101;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.484 1_81 - 139 HTH_26 PF13443.1 63 4e-09 29.7 0.1 1 1 5.8e-11 6.6e-09 29.0 0.1 4 53 85 133 82 135 0.94 # 66138 # 66554 # -1 # ID=1_81;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.468 1_21 - 146 Zn-ribbon_8 PF09723.5 42 0.00092 12.3 1.8 1 2 9e-05 0.01 8.9 0.1 21 36 3 18 1 21 0.79 # 18053 # 18490 # 1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.530 1_21 - 146 Zn-ribbon_8 PF09723.5 42 0.00092 12.3 1.8 2 2 0.0093 1.1 2.5 0.2 7 20 25 37 22 46 0.64 # 18053 # 18490 # 1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.530 1_28 - 72 Zn_Tnp_IS1595 PF12760.2 46 0.00036 13.5 1.9 1 2 4.6e-05 0.0026 10.7 0.0 19 33 9 23 3 37 0.81 # 21592 # 21807 # 1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.426 1_28 - 72 Zn_Tnp_IS1595 PF12760.2 46 0.00036 13.5 1.9 2 2 0.016 0.92 2.5 0.5 29 46 48 65 40 65 0.73 # 21592 # 21807 # 1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.426 1_101 - 173 Zn_Tnp_IS1595 PF12760.2 46 0.069 6.2 10.3 1 1 6.4e-05 0.0037 10.2 4.6 20 44 60 86 52 88 0.93 # 77218 # 77736 # 1 # ID=1_101;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.484 1_81 - 139 HTH_11 PF08279.7 55 0.001 11.8 0.0 1 2 0.00021 0.023 7.5 0.0 5 28 82 104 80 106 0.87 # 66138 # 66554 # -1 # ID=1_81;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.468 1_81 - 139 HTH_11 PF08279.7 55 0.001 11.8 0.0 2 2 0.011 1.3 1.9 0.0 20 30 125 135 115 136 0.92 # 66138 # 66554 # -1 # ID=1_81;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.468 1_21 - 146 zinc_ribbon_2 PF13240.1 23 0.0019 10.8 3.0 1 1 4.4e-05 0.005 9.5 3.0 2 19 12 29 11 33 0.92 # 18053 # 18490 # 1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.530 1_30 - 259 LacI PF00356.16 46 0.00081 12.1 0.1 1 1 3.3e-05 0.0019 11.0 0.1 10 23 156 169 153 175 0.86 # 22047 # 22823 # -1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.512 1_8 - 1669 LacI PF00356.16 46 0.011 8.5 8.5 1 1 0.00023 0.013 8.3 3.1 13 33 1646 1666 1645 1667 0.95 # 5355 # 10361 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.476 1_73 - 287 ParA PF10609.4 81 0.00012 15.1 0.1 1 1 3.1e-06 0.00035 13.6 0.1 2 50 143 189 142 195 0.77 # 60980 # 61840 # 1 # ID=1_73;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.431 1_57 - 848 AAA_10 PF12846.2 304 1.1e-42 139.5 0.1 1 1 4.7e-44 1.8e-42 138.9 0.1 2 285 450 746 449 759 0.83 # 47728 # 50271 # -1 # ID=1_57;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.483 1_7 - 758 AAA_10 PF12846.2 304 4.8e-08 25.8 0.1 1 1 2.4e-08 9.2e-07 21.6 0.0 2 262 194 461 193 506 0.53 # 3082 # 5355 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.454 1_73 - 287 AAA_10 PF12846.2 304 0.00092 11.7 0.1 1 1 0.00012 0.0047 9.4 0.0 8 38 33 63 32 74 0.90 # 60980 # 61840 # 1 # ID=1_73;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.431 1_45 - 112 Peptidase_M1 PF01433.15 390 0.00043 12.5 0.0 1 1 4.3e-06 0.00049 12.3 0.0 285 349 38 102 24 108 0.82 # 32870 # 33205 # -1 # ID=1_45;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.455 1_28 - 72 UPF0547 PF10571.4 26 0.00024 13.9 0.2 1 1 2.1e-06 0.00024 13.9 0.2 14 23 8 17 2 17 0.85 # 21592 # 21807 # 1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.426 1_73 - 287 ArsA_ATPase PF02374.10 305 3.4e-06 19.3 0.1 1 2 1.7e-06 0.0002 13.5 0.1 7 38 32 63 27 68 0.92 # 60980 # 61840 # 1 # ID=1_73;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.431 1_73 - 287 ArsA_ATPase PF02374.10 305 3.4e-06 19.3 0.1 2 2 0.0017 0.2 3.7 0.0 124 137 139 152 117 200 0.89 # 60980 # 61840 # 1 # ID=1_73;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.431 1_73 - 287 AAA_31 PF13614.1 157 4.4e-07 23.0 0.0 1 2 0.00039 0.022 7.7 0.0 9 40 34 65 32 90 0.85 # 60980 # 61840 # 1 # ID=1_73;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.431 1_73 - 287 AAA_31 PF13614.1 157 4.4e-07 23.0 0.0 2 2 8.5e-06 0.00049 13.2 0.0 111 155 135 178 131 180 0.87 # 60980 # 61840 # 1 # ID=1_73;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.431 1_39 - 457 AAA_31 PF13614.1 157 8.5e-06 18.9 0.0 1 1 3.4e-07 1.9e-05 17.7 0.0 4 41 213 251 212 259 0.90 # 29572 # 30942 # 1 # ID=1_39;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.472 1_18 - 421 DNA_pol_lambd_f PF10391.4 52 0.00039 13.1 0.0 1 1 9.5e-06 0.0011 11.7 0.0 6 29 182 205 180 216 0.83 # 15504 # 16766 # -1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.496 1_8 - 1669 AAA_11 PF13086.1 236 0.0002 14.1 1.2 1 2 0.00013 0.015 7.9 0.0 3 38 534 570 532 591 0.85 # 5355 # 10361 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.476 1_8 - 1669 AAA_11 PF13086.1 236 0.0002 14.1 1.2 2 2 0.0043 0.49 3.0 0.0 173 230 599 659 574 661 0.70 # 5355 # 10361 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.476 # # Program: hmmsearch # Version: 3.1b1 (May 2013) # Pipeline mode: SEARCH # Query file: /tmp/98aafac0-7170-474a-b0ad-6a048949bdb5 # Target file: checkm_output/bins/pm1998/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm1998/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/98aafac0-7170-474a-b0ad-6a048949bdb5 checkm_output/bins/pm1998/genes.faa # Current dir: /mnt/data/azomer/reads-for-assembly/files/output/allcontigs/output_1512029421078392887 # Date: Thu Nov 30 09:57:23 2017 # [ok]