# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_2 - 284 RepC PF06504.6 283 9.3e-158 513.0 0.0 1 1 1e-158 1e-157 512.9 0.0 2 282 2 282 1 283 0.99 # 1113 # 1964 # -1 # ID=1_2;partial=00;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.660 1_8 - 180 zf-ribbon_3 PF13248.1 26 0.021 3.9 12.3 1 2 0.00031 0.0031 6.5 5.7 4 25 75 101 72 102 0.63 # 6467 # 7006 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.574 1_8 - 180 zf-ribbon_3 PF13248.1 26 0.021 3.9 12.3 2 2 2.3e-05 0.00023 10.1 0.9 18 24 94 100 92 108 0.70 # 6467 # 7006 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.574 1_8 - 180 Ribosomal_S27e PF01667.12 55 1.9e-05 13.9 1.1 1 1 3.5e-06 3.5e-05 13.1 1.1 5 33 71 99 68 104 0.90 # 6467 # 7006 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.574 1_8 - 180 zinc_ribbon_4 PF13717.1 36 1e-05 14.9 0.2 1 2 0.00015 0.0015 8.0 0.1 2 14 73 85 73 87 0.84 # 6467 # 7006 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.574 1_8 - 180 zinc_ribbon_4 PF13717.1 36 1e-05 14.9 0.2 2 2 0.0017 0.017 4.6 0.0 5 15 95 105 94 114 0.81 # 6467 # 7006 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.574 1_3 - 280 AAA_25 PF13481.1 194 3.5e-38 120.6 0.0 1 1 5e-39 5e-38 120.1 0.0 14 192 12 183 5 185 0.88 # 1951 # 2790 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.669 1_8 - 180 zinc_ribbon_5 PF13719.1 37 4.9e-06 15.8 0.1 1 2 9.4e-05 0.00094 8.5 0.0 2 14 73 85 72 87 0.84 # 6467 # 7006 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.574 1_8 - 180 zinc_ribbon_5 PF13719.1 37 4.9e-06 15.8 0.1 2 2 0.0013 0.013 4.8 0.0 5 15 95 105 94 115 0.81 # 6467 # 7006 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.574 1_8 - 180 Zn-ribbon_8 PF09723.5 42 0.00036 10.2 4.7 1 1 8.4e-05 0.00084 9.0 4.7 7 35 75 101 74 105 0.90 # 6467 # 7006 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.574 1_1 - 263 Pterin_bind PF00809.17 210 4.2e-48 153.1 0.0 1 1 5.1e-49 5.1e-48 152.8 0.0 1 209 10 215 10 216 0.93 # 17 # 805 # -1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=AGxAG;rbs_spacer=5-10bp;gc_cont=0.616 1_8 - 180 NOB1_Zn_bind PF08772.6 73 4.1e-05 13.1 0.4 1 1 7.8e-06 7.8e-05 12.2 0.4 10 36 74 104 71 125 0.75 # 6467 # 7006 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.574 # # Program: hmmsearch # Version: 3.1b1 (May 2013) # Pipeline mode: SEARCH # Query file: /tmp/c5b8abfb-5cda-4002-a542-184fa75609e6 # Target file: checkm_output/bins/pm1982/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm1982/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/c5b8abfb-5cda-4002-a542-184fa75609e6 checkm_output/bins/pm1982/genes.faa # Current dir: /mnt/data/azomer/reads-for-assembly/files/output/allcontigs/output_1512029421078392887 # Date: Thu Nov 30 09:56:59 2017 # [ok]