# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 2_1 - 378 tRNA-synt_1c_C PF03950.13 174 2.3e-05 13.3 0.0 1 1 6.1e-06 4.3e-05 12.4 0.0 62 123 46 109 24 159 0.79 # 2 # 1135 # -1 # ID=2_1;partial=10;start_type=GTG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.481 1_1 - 337 Methyltransf_26 PF13659.1 117 2.5e-09 26.4 0.0 1 2 6.6e-07 4.6e-06 15.9 0.0 55 113 31 95 15 98 0.77 # 296 # 1306 # -1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=7bp;gc_cont=0.353 1_1 - 337 Methyltransf_26 PF13659.1 117 2.5e-09 26.4 0.0 2 2 0.00015 0.001 8.3 0.0 2 50 267 314 266 334 0.83 # 296 # 1306 # -1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=7bp;gc_cont=0.353 1_2 - 85 HTH_37 PF13744.1 80 1.8e-10 29.7 0.3 1 1 3.4e-11 2.4e-10 29.4 0.3 11 77 6 71 2 73 0.93 # 1325 # 1579 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.376 1_1 - 337 N6_N4_Mtase PF01555.13 231 2.6e-45 143.8 0.1 1 1 4.9e-46 3.4e-45 143.4 0.1 1 228 47 302 47 305 0.91 # 296 # 1306 # -1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=7bp;gc_cont=0.353 1_2 - 85 HTH_25 PF13413.1 62 1.1e-07 20.7 0.2 1 2 4.1e-07 2.9e-06 16.1 0.0 4 34 20 50 18 56 0.90 # 1325 # 1579 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.376 1_2 - 85 HTH_25 PF13413.1 62 1.1e-07 20.7 0.2 2 2 0.0019 0.013 4.4 0.2 6 27 48 72 47 74 0.67 # 1325 # 1579 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.376 1_2 - 85 HTH_3 PF01381.17 55 1.1e-21 65.7 0.2 1 1 1.9e-22 1.3e-21 65.4 0.2 1 54 18 71 18 72 0.96 # 1325 # 1579 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.376 1_2 - 85 HTH_23 PF13384.1 50 2.1e-05 13.4 0.2 1 2 0.00013 0.00092 8.2 0.0 14 35 18 44 8 54 0.76 # 1325 # 1579 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.376 1_2 - 85 HTH_23 PF13384.1 50 2.1e-05 13.4 0.2 2 2 0.0038 0.027 3.5 0.0 19 32 57 70 55 72 0.87 # 1325 # 1579 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.376 1_2 - 85 HTH_19 PF12844.2 64 5.3e-16 47.7 0.3 1 1 8.8e-17 6.2e-16 47.5 0.3 2 63 16 77 15 78 0.95 # 1325 # 1579 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.376 1_2 - 85 HTH_31 PF13560.1 64 2.6e-14 42.4 0.0 1 1 4.4e-15 3.1e-14 42.2 0.0 5 57 17 68 13 80 0.91 # 1325 # 1579 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.376 1_2 - 85 HTH_26 PF13443.1 63 1e-08 24.5 0.0 1 1 2e-09 1.4e-08 24.1 0.0 3 58 19 73 17 79 0.89 # 1325 # 1579 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.376 1_2 - 85 HTH_Crp_2 PF13545.1 76 5.8e-07 18.5 0.2 1 2 1.2e-06 8.7e-06 14.7 0.0 18 45 16 43 8 49 0.78 # 1325 # 1579 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.376 1_2 - 85 HTH_Crp_2 PF13545.1 76 5.8e-07 18.5 0.2 2 2 0.0096 0.067 2.3 0.1 59 73 47 61 44 73 0.53 # 1325 # 1579 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.376 # # Program: hmmsearch # Version: 3.1b1 (May 2013) # Pipeline mode: SEARCH # Query file: /tmp/515c0532-5c68-4e84-9616-463e6bd3683c # Target file: checkm_output/bins/pm1973/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm1973/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/515c0532-5c68-4e84-9616-463e6bd3683c checkm_output/bins/pm1973/genes.faa # Current dir: /mnt/data/azomer/reads-for-assembly/files/output/allcontigs/output_1512029421078392887 # Date: Thu Nov 30 09:56:43 2017 # [ok]