# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 2_23 - 332 ATP-synt_ab PF00006.20 215 0.00038 12.4 0.0 1 1 8.8e-06 0.00061 11.7 0.0 16 62 159 205 151 247 0.86 # 16996 # 17991 # 1 # ID=2_23;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.500 2_23 - 332 KaiC PF06745.8 227 0.00012 13.6 0.0 1 1 3e-06 0.00021 12.8 0.0 16 53 155 190 148 240 0.77 # 16996 # 17991 # 1 # ID=2_23;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.500 2_23 - 332 ABC_tran PF00005.22 137 1.1e-06 21.4 0.0 1 1 5e-08 1.7e-06 20.8 0.0 6 45 153 192 150 257 0.87 # 16996 # 17991 # 1 # ID=2_23;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.500 2_16 - 867 ABC_tran PF00005.22 137 0.00047 12.9 0.0 1 1 4.6e-05 0.0016 11.2 0.0 14 38 494 518 481 550 0.83 # 9360 # 11960 # 1 # ID=2_16;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.498 3_3 - 190 HTH_22 PF13309.1 64 3.5e-06 19.2 0.1 1 1 1.5e-07 1e-05 17.7 0.1 45 62 168 185 166 187 0.92 # 1376 # 1945 # -1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.474 1_33 - 422 HHH_5 PF14520.1 60 1.4e-07 24.1 0.8 1 1 5.8e-08 4e-06 19.4 0.9 8 56 181 279 174 282 0.74 # 24870 # 26135 # 1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.546 2_23 - 332 Sigma54_activat PF00158.21 168 6e-06 18.2 0.0 1 1 3.1e-07 1.1e-05 17.4 0.0 14 54 150 190 138 213 0.82 # 16996 # 17991 # 1 # ID=2_23;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.500 1_12 - 1073 Sigma54_activat PF00158.21 168 0.00012 14.0 0.4 1 1 9.4e-06 0.00033 12.6 0.4 8 130 480 600 473 606 0.79 # 9482 # 12700 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.526 2_23 - 332 FtsK_SpoIIIE PF01580.13 205 6e-07 21.5 0.0 1 1 5.1e-08 1.2e-06 20.5 0.0 38 64 158 184 139 191 0.81 # 16996 # 17991 # 1 # ID=2_23;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.500 2_16 - 867 FtsK_SpoIIIE PF01580.13 205 8.2e-06 17.8 0.0 1 1 8.1e-07 1.9e-05 16.6 0.0 21 62 462 515 445 522 0.82 # 9360 # 11960 # 1 # ID=2_16;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.498 1_13 - 510 FtsK_SpoIIIE PF01580.13 205 0.00047 12.0 0.0 1 1 3.6e-05 0.00083 11.2 0.0 39 59 124 147 97 153 0.78 # 12700 # 14229 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.437 3_3 - 190 HTH_38 PF13936.1 44 7.8e-06 17.8 0.0 1 1 3.6e-07 2.5e-05 16.2 0.0 4 39 148 184 145 185 0.93 # 1376 # 1945 # -1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.474 3_3 - 190 SpoIIID PF12116.3 82 4.2e-05 15.9 0.1 1 2 0.038 2.7 0.5 0.0 33 55 8 30 4 37 0.84 # 1376 # 1945 # -1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.474 3_3 - 190 SpoIIID PF12116.3 82 4.2e-05 15.9 0.1 2 2 5.8e-06 0.00041 12.7 0.0 11 42 157 188 149 189 0.82 # 1376 # 1945 # -1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.474 2_23 - 332 MobB PF03205.9 140 6.2e-06 18.4 1.9 1 1 1.5e-07 1e-05 17.6 0.3 2 39 160 196 159 201 0.83 # 16996 # 17991 # 1 # ID=2_23;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.500 3_3 - 190 NanE PF04131.9 192 0.00015 13.2 0.0 1 2 0.00013 0.0089 7.4 0.0 47 79 9 41 1 69 0.76 # 1376 # 1945 # -1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.474 3_3 - 190 NanE PF04131.9 192 0.00015 13.2 0.0 2 2 0.0018 0.13 3.6 0.0 58 141 83 161 75 177 0.70 # 1376 # 1945 # -1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.474 2_23 - 332 Myosin_head PF00063.16 689 0.00011 12.7 0.0 1 1 2.2e-06 0.00016 12.2 0.0 84 110 157 183 147 209 0.90 # 16996 # 17991 # 1 # ID=2_23;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.500 1_8 - 226 TetR_N PF00440.18 47 2.5e-20 64.4 0.1 1 2 1.4e-20 4.8e-19 60.2 0.0 2 47 19 64 18 64 0.97 # 6456 # 7133 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.627 1_8 - 226 TetR_N PF00440.18 47 2.5e-20 64.4 0.1 2 2 0.025 0.88 1.8 0.1 1 16 179 194 179 196 0.91 # 6456 # 7133 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.627 3_3 - 190 TetR_N PF00440.18 47 0.00017 13.6 0.0 1 1 9.9e-06 0.00035 12.7 0.0 17 36 166 185 164 185 0.94 # 1376 # 1945 # -1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.474 2_23 - 332 AAA_19 PF13245.1 76 0.00045 12.4 0.1 1 1 2.8e-05 0.00098 11.3 0.1 5 48 153 191 149 224 0.78 # 16996 # 17991 # 1 # ID=2_23;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.500 1_12 - 1073 AAA_19 PF13245.1 76 0.0017 10.6 3.7 1 2 0.00056 0.02 7.2 0.2 2 75 485 551 484 552 0.75 # 9482 # 12700 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.526 1_12 - 1073 AAA_19 PF13245.1 76 0.0017 10.6 3.7 2 2 0.027 0.95 1.8 0.0 17 32 706 721 705 731 0.82 # 9482 # 12700 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.526 1_16 - 239 CbiA PF01656.18 195 2.9e-06 19.2 0.6 1 2 0.0004 0.028 6.2 0.1 1 19 3 21 3 25 0.89 # 15566 # 16282 # 1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.418 1_16 - 239 CbiA PF01656.18 195 2.9e-06 19.2 0.6 2 2 9.1e-06 0.00064 11.5 0.0 109 165 81 142 29 173 0.76 # 15566 # 16282 # 1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.418 3_1 - 240 Rep_3 PF01051.16 222 9.6e-44 142.0 0.4 1 1 1.6e-45 1.1e-43 141.8 0.4 2 213 8 227 7 233 0.92 # 1 # 720 # 1 # ID=3_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.440 2_2 - 255 rve PF00665.21 120 7.6e-14 44.3 0.0 1 2 0.02 1.4 1.5 0.0 83 102 30 49 7 51 0.90 # 1238 # 2002 # 1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.610 2_2 - 255 rve PF00665.21 120 7.6e-14 44.3 0.0 2 2 1.7e-14 1.2e-12 40.5 0.0 8 117 73 179 69 182 0.90 # 1238 # 2002 # 1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.610 1_6 - 514 zf-ribbon_3 PF13248.1 26 0.04 5.7 9.1 1 2 9.1e-05 0.0064 8.2 0.9 18 24 95 101 93 108 0.74 # 4287 # 5828 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.555 1_6 - 514 zf-ribbon_3 PF13248.1 26 0.04 5.7 9.1 2 2 0.0085 0.6 1.9 0.1 18 23 449 454 446 457 0.83 # 4287 # 5828 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.555 2_23 - 332 AAA_23 PF13476.1 202 0.00031 13.5 0.0 1 1 2.2e-05 0.0005 12.8 0.0 19 39 158 178 105 184 0.91 # 16996 # 17991 # 1 # ID=2_23;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.500 2_16 - 867 AAA_23 PF13476.1 202 0.0033 10.1 0.0 1 1 0.00014 0.0033 10.1 0.0 22 39 494 511 464 521 0.84 # 9360 # 11960 # 1 # ID=2_16;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.498 2_17 - 238 AAA_23 PF13476.1 202 0.052 6.2 13.9 1 1 0.00027 0.0064 9.2 1.7 97 196 67 185 58 218 0.59 # 11978 # 12691 # 1 # ID=2_17;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.511 2_23 - 332 Zeta_toxin PF06414.7 201 1.1e-06 20.3 0.0 1 1 2.7e-08 1.9e-06 19.5 0.0 12 51 154 193 145 204 0.86 # 16996 # 17991 # 1 # ID=2_23;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.500 1_12 - 1073 AAA_30 PF13604.1 196 1.4e-53 173.7 7.6 1 1 1.5e-54 5.3e-53 171.9 6.4 1 192 477 660 477 663 0.97 # 9482 # 12700 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.526 2_23 - 332 AAA_30 PF13604.1 196 0.00011 14.3 0.1 1 2 4.7e-05 0.0017 10.4 0.1 11 51 151 190 145 197 0.80 # 16996 # 17991 # 1 # ID=2_23;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.500 2_23 - 332 AAA_30 PF13604.1 196 0.00011 14.3 0.1 2 2 0.024 0.83 1.6 0.0 121 178 204 258 191 272 0.77 # 16996 # 17991 # 1 # ID=2_23;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.500 1_5 - 213 TMP-TENI PF02581.12 180 5.3e-06 18.0 0.0 1 2 0.094 6.5 -1.8 0.0 99 121 9 29 4 62 0.69 # 3051 # 3689 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.660 1_5 - 213 TMP-TENI PF02581.12 180 5.3e-06 18.0 0.0 2 2 1.6e-07 1.1e-05 17.0 0.0 64 171 71 181 36 190 0.83 # 3051 # 3689 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.660 1_13 - 510 TraG-D_C PF12696.2 128 9.4e-22 69.7 0.0 1 1 2.2e-23 1.6e-21 69.0 0.0 1 127 350 471 350 472 0.80 # 12700 # 14229 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.437 3_3 - 190 Sigma70_r4 PF04545.11 50 0.00013 13.7 0.0 1 2 0.028 2 0.3 0.0 31 40 148 157 144 160 0.85 # 1376 # 1945 # -1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.474 3_3 - 190 Sigma70_r4 PF04545.11 50 0.00013 13.7 0.0 2 2 1.5e-05 0.0011 10.8 0.0 18 37 163 182 148 188 0.88 # 1376 # 1945 # -1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.474 1_12 - 1073 AAA PF00004.24 132 2.3e-06 20.3 0.9 1 1 1.3e-07 9e-06 18.4 0.1 4 111 500 600 497 612 0.73 # 9482 # 12700 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.526 2_23 - 332 Parvo_NS1 PF01057.12 272 0.0006 11.1 0.0 1 1 1.4e-05 0.001 10.4 0.0 104 138 148 182 140 188 0.90 # 16996 # 17991 # 1 # ID=2_23;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.500 1_12 - 1073 Herpes_Helicase PF02689.9 819 1.5e-05 15.3 0.0 1 2 0.0014 0.096 2.7 0.0 173 208 539 574 515 584 0.81 # 9482 # 12700 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.526 1_12 - 1073 Herpes_Helicase PF02689.9 819 1.5e-05 15.3 0.0 2 2 9.2e-06 0.00064 9.9 0.0 739 782 850 894 831 914 0.80 # 9482 # 12700 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.526 3_3 - 190 MRP-L20 PF12824.2 164 2.3e-06 20.1 0.0 1 1 4.5e-08 3.1e-06 19.6 0.0 70 123 133 184 116 189 0.78 # 1376 # 1945 # -1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.474 1_12 - 1073 Torsin PF06309.6 127 1.5e-05 17.3 0.0 1 1 6.1e-07 4.3e-05 15.8 0.0 19 85 460 526 452 537 0.83 # 9482 # 12700 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.526 3_3 - 190 MerR_1 PF13411.1 69 0.0001 14.5 0.4 1 2 0.0072 0.5 2.7 0.0 45 66 78 99 76 102 0.82 # 1376 # 1945 # -1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.474 3_3 - 190 MerR_1 PF13411.1 69 0.0001 14.5 0.4 2 2 6.5e-05 0.0045 9.2 0.1 1 23 166 188 166 189 0.94 # 1376 # 1945 # -1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.474 2_23 - 332 cobW PF02492.14 178 1.5e-06 20.1 0.0 1 1 4.1e-08 2.9e-06 19.2 0.0 3 45 161 202 159 257 0.77 # 16996 # 17991 # 1 # ID=2_23;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.500 2_23 - 332 AAA_16 PF13191.1 185 4.7e-07 22.3 0.0 1 1 3.4e-08 1.2e-06 21.0 0.0 24 61 158 195 149 274 0.82 # 16996 # 17991 # 1 # ID=2_23;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.500 2_16 - 867 AAA_16 PF13191.1 185 0.0007 12.0 0.0 1 1 0.00018 0.0063 8.9 0.0 25 47 492 514 481 574 0.85 # 9360 # 11960 # 1 # ID=2_16;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.498 2_23 - 332 AAA_22 PF13401.1 131 1.9e-07 23.7 0.0 1 1 1.8e-08 4.3e-07 22.6 0.0 3 54 157 202 153 241 0.74 # 16996 # 17991 # 1 # ID=2_23;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.500 2_16 - 867 AAA_22 PF13401.1 131 7.3e-05 15.3 0.0 1 1 7.5e-05 0.0018 10.9 0.0 5 28 492 515 489 549 0.85 # 9360 # 11960 # 1 # ID=2_16;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.498 1_12 - 1073 AAA_22 PF13401.1 131 0.00042 12.9 0.2 1 1 0.00022 0.0052 9.4 0.2 4 125 494 598 490 603 0.81 # 9482 # 12700 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.526 2_23 - 332 AAA_29 PF13555.1 62 0.0007 11.6 0.0 1 1 2.3e-05 0.0016 10.4 0.0 19 43 157 178 145 188 0.75 # 16996 # 17991 # 1 # ID=2_23;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.500 2_17 - 238 Mnd1 PF03962.10 188 0.0014 10.7 9.9 1 2 0.00013 0.0091 8.0 0.5 105 139 34 64 20 86 0.71 # 11978 # 12691 # 1 # ID=2_17;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.511 2_17 - 238 Mnd1 PF03962.10 188 0.0014 10.7 9.9 2 2 0.00034 0.024 6.7 3.2 66 126 155 217 110 222 0.84 # 11978 # 12691 # 1 # ID=2_17;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.511 3_3 - 190 HTH_32 PF13565.1 77 7.7e-07 22.3 0.5 1 2 0.081 2.8 1.3 0.0 24 51 36 68 15 81 0.66 # 1376 # 1945 # -1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.474 3_3 - 190 HTH_32 PF13565.1 77 7.7e-07 22.3 0.5 2 2 2.1e-07 7.3e-06 19.2 0.2 7 76 127 185 121 186 0.71 # 1376 # 1945 # -1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.474 2_2 - 255 HTH_32 PF13565.1 77 0.00013 15.1 0.2 1 1 1.3e-05 0.00047 13.4 0.2 37 76 15 50 6 51 0.83 # 1238 # 2002 # 1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.610 1_6 - 514 A2L_zn_ribbon PF08792.5 33 0.0046 8.9 4.7 1 2 0.00018 0.013 7.5 0.6 5 29 76 101 74 102 0.90 # 4287 # 5828 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.555 1_6 - 514 A2L_zn_ribbon PF08792.5 33 0.0046 8.9 4.7 2 2 0.0078 0.55 2.3 0.3 20 28 446 454 444 457 0.62 # 4287 # 5828 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.555 3_3 - 190 HTH_23 PF13384.1 50 9e-06 17.7 0.0 1 1 8.2e-07 2.9e-05 16.1 0.0 12 37 160 185 151 188 0.84 # 1376 # 1945 # -1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.474 1_8 - 226 HTH_23 PF13384.1 50 0.00063 11.9 0.2 1 1 9.7e-05 0.0034 9.5 0.0 10 35 22 51 14 64 0.75 # 6456 # 7133 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.627 3_3 - 190 HTH_7 PF02796.10 45 7.6e-18 56.6 0.1 1 1 5.4e-19 3.8e-17 54.4 0.1 1 44 144 188 144 189 0.98 # 1376 # 1945 # -1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.474 1_6 - 514 Ribosomal_S27e PF01667.12 55 6e-05 15.0 0.8 1 1 8.6e-07 6e-05 15.0 0.8 5 33 72 100 69 105 0.90 # 4287 # 5828 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.555 1_6 - 514 zinc_ribbon_4 PF13717.1 36 0.004 9.3 4.0 1 2 0.00044 0.031 6.5 0.1 1 12 73 84 73 87 0.82 # 4287 # 5828 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.555 1_6 - 514 zinc_ribbon_4 PF13717.1 36 0.004 9.3 4.0 2 2 0.0063 0.44 2.8 0.0 5 14 96 105 95 113 0.81 # 4287 # 5828 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.555 3_3 - 190 HTH_29 PF13551.1 112 0.00035 13.1 3.1 1 3 0.089 6.2 -0.5 0.0 37 71 23 59 9 79 0.61 # 1376 # 1945 # -1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.474 3_3 - 190 HTH_29 PF13551.1 112 0.00035 13.1 3.1 2 3 0.0011 0.077 5.6 0.3 37 71 129 162 122 166 0.75 # 1376 # 1945 # -1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.474 3_3 - 190 HTH_29 PF13551.1 112 0.00035 13.1 3.1 3 3 0.00014 0.0097 8.5 0.0 6 32 159 185 154 188 0.80 # 1376 # 1945 # -1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.474 1_3 - 271 TIGR03413 TIGR03413 248 2.2e-06 19.3 0.7 1 1 6.9e-08 4.8e-06 18.2 0.7 20 96 84 165 76 251 0.71 # 1865 # 2677 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.615 2_2 - 255 DDE_Tnp_IS66 PF03050.9 271 7.9e-10 30.7 0.4 1 1 1.7e-11 1.2e-09 30.2 0.4 11 133 16 144 8 183 0.86 # 1238 # 2002 # 1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.610 2_23 - 332 Arch_ATPase PF01637.13 234 6.1e-06 18.4 0.0 1 1 1.6e-07 1.1e-05 17.6 0.0 15 68 155 205 149 226 0.87 # 16996 # 17991 # 1 # ID=2_23;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.500 1_12 - 1073 PhoH PF02562.11 205 2.2e-09 29.2 4.8 1 2 9.6e-07 3.4e-05 15.5 0.4 5 39 478 514 475 536 0.80 # 9482 # 12700 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.526 1_12 - 1073 PhoH PF02562.11 205 2.2e-09 29.2 4.8 2 2 3e-06 0.00011 13.9 0.1 120 162 562 605 553 635 0.82 # 9482 # 12700 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.526 2_23 - 332 PhoH PF02562.11 205 0.00021 12.9 0.0 1 1 1.1e-05 0.00039 12.1 0.0 14 45 153 184 143 210 0.79 # 16996 # 17991 # 1 # ID=2_23;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.500 1_34 - 264 SprT-like PF10263.4 157 2.7e-37 120.2 0.0 1 1 5.3e-39 3.7e-37 119.8 0.0 1 150 12 236 12 262 0.92 # 26286 # 27077 # 1 # ID=1_34;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.523 2_23 - 332 ResIII PF04851.10 184 4.3e-06 19.0 0.0 1 1 9.8e-08 6.8e-06 18.4 0.0 22 61 148 196 104 202 0.81 # 16996 # 17991 # 1 # ID=2_23;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.500 1_13 - 510 TrwB_AAD_bind PF10412.4 386 7.3e-119 389.1 0.0 1 1 3.7e-120 8.6e-119 388.9 0.0 1 385 112 490 112 491 0.95 # 12700 # 14229 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.437 2_16 - 867 TrwB_AAD_bind PF10412.4 386 6.5e-07 20.6 1.6 1 2 1.5e-06 3.4e-05 14.9 0.0 16 51 492 527 484 536 0.92 # 9360 # 11960 # 1 # ID=2_16;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.498 2_16 - 867 TrwB_AAD_bind PF10412.4 386 6.5e-07 20.6 1.6 2 2 0.0042 0.098 3.5 0.0 102 168 741 806 720 812 0.79 # 9360 # 11960 # 1 # ID=2_16;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.498 2_23 - 332 TrwB_AAD_bind PF10412.4 386 9.6e-06 16.8 0.1 1 1 6.4e-07 1.5e-05 16.1 0.1 14 49 157 191 150 202 0.81 # 16996 # 17991 # 1 # ID=2_23;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.500 2_23 - 332 AAA_18 PF13238.1 129 3.3e-06 19.9 0.0 1 1 2e-07 6.8e-06 18.8 0.0 1 29 161 194 161 213 0.77 # 16996 # 17991 # 1 # ID=2_23;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.500 1_13 - 510 AAA_18 PF13238.1 129 9e-05 15.2 0.0 1 1 5.2e-06 0.00018 14.2 0.0 3 21 131 149 130 238 0.78 # 12700 # 14229 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.437 1_33 - 422 IMS_HHH PF11798.3 32 3.2e-07 22.6 0.0 1 1 1.4e-08 9.5e-07 21.2 0.0 4 32 171 199 168 199 0.85 # 24870 # 26135 # 1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.546 2_23 - 332 GvpD PF07088.6 484 1.8e-06 18.9 0.0 1 1 3.9e-08 2.7e-06 18.3 0.0 10 89 158 241 150 262 0.76 # 16996 # 17991 # 1 # ID=2_23;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.500 2_23 - 332 DUF258 PF03193.11 161 7.8e-05 14.3 0.0 1 1 2e-06 0.00014 13.5 0.0 29 61 151 184 129 224 0.81 # 16996 # 17991 # 1 # ID=2_23;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.500 1_13 - 510 DUF87 PF01935.12 229 7.7e-08 24.8 0.0 1 1 3.4e-09 1.2e-07 24.2 0.0 10 68 116 170 109 262 0.85 # 12700 # 14229 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.437 2_23 - 332 DUF87 PF01935.12 229 1.8e-06 20.3 0.0 1 1 9.7e-08 3.4e-06 19.4 0.0 9 61 144 195 138 196 0.78 # 16996 # 17991 # 1 # ID=2_23;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.500 3_3 - 190 HTH_28 PF13518.1 52 3.9e-05 16.1 0.0 1 1 2.4e-06 0.00017 14.0 0.0 13 32 166 185 159 188 0.87 # 1376 # 1945 # -1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.474 1_8 - 226 HTH_Tnp_1_2 PF13022.1 142 0.00055 12.1 0.0 1 1 1.2e-05 0.00081 11.6 0.0 22 77 24 73 5 79 0.76 # 6456 # 7133 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.627 3_3 - 190 HTH_24 PF13412.1 48 1.5e-05 16.7 0.0 1 2 0.037 2.6 0.0 0.0 30 46 74 90 69 91 0.88 # 1376 # 1945 # -1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.474 3_3 - 190 HTH_24 PF13412.1 48 1.5e-05 16.7 0.0 2 2 2e-06 0.00014 13.7 0.0 9 38 157 186 157 188 0.92 # 1376 # 1945 # -1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.474 2_23 - 332 Sigma54_activ_2 PF14532.1 138 1.7e-06 20.6 0.0 1 1 5e-08 3.5e-06 19.5 0.0 14 65 151 202 145 212 0.92 # 16996 # 17991 # 1 # ID=2_23;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.500 2_23 - 332 MMR_HSR1 PF01926.18 116 0.0003 13.2 0.0 1 1 7.1e-06 0.0005 12.5 0.0 2 41 161 205 160 310 0.84 # 16996 # 17991 # 1 # ID=2_23;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.500 2_23 - 332 DEAD PF00270.24 169 2.1e-06 19.7 0.0 1 1 5.7e-08 4e-06 18.8 0.0 13 70 157 211 144 242 0.78 # 16996 # 17991 # 1 # ID=2_23;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.500 2_23 - 332 DUF2075 PF09848.4 352 6.4e-05 14.4 0.0 1 1 1.3e-06 9.1e-05 13.9 0.0 1 32 158 187 158 216 0.76 # 16996 # 17991 # 1 # ID=2_23;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.500 1_12 - 1073 UvrD_C_2 PF13538.1 104 1.7e-16 52.7 0.1 1 1 1e-17 7.3e-16 50.7 0.1 2 102 797 896 796 898 0.76 # 9482 # 12700 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.526 2_23 - 332 T2SE PF00437.15 272 2.2e-52 170.0 0.1 1 1 7.4e-54 2.6e-52 169.7 0.1 3 271 10 311 8 312 0.94 # 16996 # 17991 # 1 # ID=2_23;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.500 1_13 - 510 T2SE PF00437.15 272 0.00061 11.1 0.1 1 1 3.1e-05 0.0011 10.3 0.1 130 149 128 147 102 160 0.84 # 12700 # 14229 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.437 2_23 - 332 NACHT PF05729.7 166 6.2e-05 15.1 0.0 1 1 1.9e-06 0.00013 14.0 0.0 1 27 159 185 159 188 0.90 # 16996 # 17991 # 1 # ID=2_23;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.500 2_23 - 332 UPF0079 PF02367.12 123 4.3e-06 18.8 0.0 1 1 1.2e-07 8.6e-06 17.8 0.0 9 45 152 188 145 193 0.85 # 16996 # 17991 # 1 # ID=2_23;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.500 2_23 - 332 AAA_17 PF13207.1 121 0.00028 14.1 0.1 1 1 2.8e-05 0.00066 12.9 0.1 2 40 161 195 160 229 0.75 # 16996 # 17991 # 1 # ID=2_23;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.500 2_16 - 867 AAA_17 PF13207.1 121 0.00039 13.7 3.9 1 1 0.00023 0.0053 10.0 0.0 3 21 495 513 494 565 0.80 # 9360 # 11960 # 1 # ID=2_16;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.498 1_13 - 510 AAA_17 PF13207.1 121 0.00053 13.2 0.0 1 1 6.7e-05 0.0016 11.7 0.0 4 42 131 191 129 260 0.58 # 12700 # 14229 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.437 2_23 - 332 AAA_7 PF12775.2 272 6.9e-05 14.4 0.0 1 1 2.3e-06 0.00016 13.2 0.0 25 64 150 189 139 209 0.86 # 16996 # 17991 # 1 # ID=2_23;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.500 1_6 - 514 DZR PF12773.2 50 0.0041 9.4 4.8 1 2 0.0017 0.12 4.8 3.4 1 20 77 101 64 109 0.61 # 4287 # 5828 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.555 1_6 - 514 DZR PF12773.2 50 0.0041 9.4 4.8 2 2 0.0053 0.37 3.1 0.0 13 23 448 458 441 487 0.75 # 4287 # 5828 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.555 2_23 - 332 TIGR03346 TIGR03346 853 0.0001 12.8 0.0 1 1 2e-06 0.00014 12.3 0.0 598 641 161 204 149 238 0.89 # 16996 # 17991 # 1 # ID=2_23;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.500 1_12 - 1073 Viral_helicase1 PF01443.13 234 4.6e-15 48.1 5.3 1 2 2.3e-08 1.6e-06 20.2 0.0 3 104 499 605 497 649 0.73 # 9482 # 12700 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.526 1_12 - 1073 Viral_helicase1 PF01443.13 234 4.6e-15 48.1 5.3 2 2 3e-11 2.1e-09 29.6 0.5 157 234 818 899 774 899 0.74 # 9482 # 12700 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.526 1_5 - 213 PRAI PF00697.17 197 7.1e-45 145.3 0.0 1 1 1.1e-46 8e-45 145.2 0.0 1 194 5 205 5 208 0.93 # 3051 # 3689 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.660 2_23 - 332 Pox_A32 PF04665.7 241 7e-05 14.6 0.0 1 1 1.7e-06 0.00012 13.8 0.0 12 46 157 191 150 210 0.85 # 16996 # 17991 # 1 # ID=2_23;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.500 1_13 - 510 AAA_14 PF13173.1 128 8.7e-06 18.1 0.0 1 2 4.3e-06 0.00015 14.1 0.0 6 89 130 213 125 234 0.76 # 12700 # 14229 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.437 1_13 - 510 AAA_14 PF13173.1 128 8.7e-06 18.1 0.0 2 2 0.043 1.5 1.1 0.0 53 81 340 372 300 391 0.57 # 12700 # 14229 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.437 2_23 - 332 AAA_14 PF13173.1 128 0.00019 13.7 0.1 1 2 0.0044 0.16 4.3 0.0 64 96 135 165 98 166 0.69 # 16996 # 17991 # 1 # ID=2_23;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.500 2_23 - 332 AAA_14 PF13173.1 128 0.00019 13.7 0.1 2 2 6.3e-05 0.0022 10.3 0.0 2 35 158 191 157 213 0.80 # 16996 # 17991 # 1 # ID=2_23;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.500 2_23 - 332 AAA_33 PF13671.1 143 0.00026 13.3 0.0 1 1 5.9e-06 0.00041 12.6 0.0 2 26 161 188 160 256 0.81 # 16996 # 17991 # 1 # ID=2_23;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.500 1_13 - 510 T4SS-DNA_transf PF02534.9 469 3.8e-12 37.8 0.0 1 1 7.9e-14 5.5e-12 37.3 0.0 263 426 313 472 297 500 0.74 # 12700 # 14229 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.437 2_23 - 332 RNA_helicase PF00910.17 107 1.4e-05 17.7 0.1 1 2 3.5e-06 0.00024 13.7 0.0 1 25 161 185 161 242 0.75 # 16996 # 17991 # 1 # ID=2_23;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.500 2_23 - 332 RNA_helicase PF00910.17 107 1.4e-05 17.7 0.1 2 2 0.027 1.9 1.2 0.1 69 100 290 322 281 328 0.78 # 16996 # 17991 # 1 # ID=2_23;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.500 2_23 - 332 AAA_2 PF07724.9 171 4e-06 19.2 0.0 1 1 1e-07 7.2e-06 18.4 0.0 3 54 158 204 156 216 0.89 # 16996 # 17991 # 1 # ID=2_23;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.500 2_4 - 478 DNA_methylase PF00145.12 335 1.6e-79 259.8 0.0 1 1 4.4e-81 3.1e-79 258.8 0.0 1 331 96 457 96 460 0.86 # 3511 # 4944 # -1 # ID=2_4;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=3-4bp;gc_cont=0.481 2_5 - 89 DDE_Tnp_IS1 PF03400.8 131 1.1e-46 150.5 0.3 1 1 1.8e-48 1.3e-46 150.4 0.3 44 131 1 88 1 88 0.99 # 5049 # 5315 # 1 # ID=2_5;partial=00;start_type=TTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.528 2_17 - 238 3HCDH_N PF02737.13 180 0.00093 11.3 1.9 1 2 0.00032 0.022 6.8 0.1 68 118 33 83 18 86 0.84 # 11978 # 12691 # 1 # ID=2_17;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.511 2_17 - 238 3HCDH_N PF02737.13 180 0.00093 11.3 1.9 2 2 0.0023 0.16 4.0 0.2 41 80 143 180 111 210 0.68 # 11978 # 12691 # 1 # ID=2_17;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.511 1_6 - 514 zinc_ribbon_5 PF13719.1 37 0.0031 9.6 3.9 1 2 0.0004 0.028 6.5 0.1 1 12 73 84 73 87 0.82 # 4287 # 5828 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.555 1_6 - 514 zinc_ribbon_5 PF13719.1 37 0.0031 9.6 3.9 2 2 0.0051 0.36 3.0 0.0 5 14 96 105 95 113 0.81 # 4287 # 5828 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.555 2_2 - 255 DDE_Tnp_IS240 PF13610.1 140 7.1e-54 174.0 0.0 1 1 1.3e-55 9.2e-54 173.6 0.0 3 139 73 211 71 212 0.98 # 1238 # 2002 # 1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.610 3_3 - 190 HTH_17 PF12728.2 51 0.00016 14.3 0.1 1 1 4.8e-06 0.00034 13.3 0.1 2 22 166 186 165 188 0.93 # 1376 # 1945 # -1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.474 1_6 - 514 Zn-ribbon_8 PF09723.5 42 0.00019 13.8 7.4 1 2 0.00023 0.016 7.6 5.0 7 35 76 102 75 106 0.81 # 4287 # 5828 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.555 1_6 - 514 Zn-ribbon_8 PF09723.5 42 0.00019 13.8 7.4 2 2 0.00078 0.055 5.9 0.0 8 24 450 466 437 470 0.75 # 4287 # 5828 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.555 3_3 - 190 HTH_11 PF08279.7 55 1.1e-06 20.7 0.1 1 1 4.7e-08 3.3e-06 19.2 0.0 6 35 157 185 154 187 0.84 # 1376 # 1945 # -1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.474 1_12 - 1073 PIF1 PF05970.9 364 1.4e-06 19.9 0.1 1 2 1.3e-07 9.3e-06 17.1 0.0 2 65 478 537 477 588 0.85 # 9482 # 12700 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.526 1_12 - 1073 PIF1 PF05970.9 364 1.4e-06 19.9 0.1 2 2 0.087 6.1 -2.0 0.0 334 363 795 823 782 824 0.84 # 9482 # 12700 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.526 3_3 - 190 TrmB PF01978.14 68 2.9e-05 16.2 0.0 1 1 8.4e-07 5.8e-05 15.2 0.0 6 42 149 185 146 188 0.92 # 1376 # 1945 # -1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.474 1_12 - 1073 Helicase_RecD PF05127.9 177 1.4e-05 17.2 4.9 1 2 0.00058 0.041 5.9 0.1 122 146 498 522 481 539 0.76 # 9482 # 12700 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.526 1_12 - 1073 Helicase_RecD PF05127.9 177 1.4e-05 17.2 4.9 2 2 8e-06 0.00056 12.0 0.1 75 114 548 585 529 653 0.69 # 9482 # 12700 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.526 2_16 - 867 AAA_10 PF12846.2 304 1.7e-35 115.3 0.1 1 1 2.4e-36 5.6e-35 113.6 0.0 2 292 492 772 491 780 0.84 # 9360 # 11960 # 1 # ID=2_16;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.498 1_13 - 510 AAA_10 PF12846.2 304 3.8e-07 22.2 0.1 1 2 2.1e-05 0.00048 12.0 0.1 3 41 128 166 126 177 0.92 # 12700 # 14229 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.437 1_13 - 510 AAA_10 PF12846.2 304 3.8e-07 22.2 0.1 2 2 0.00034 0.0079 8.0 0.0 214 286 339 414 307 431 0.75 # 12700 # 14229 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.437 2_23 - 332 AAA_10 PF12846.2 304 0.00019 13.3 0.0 1 1 1.2e-05 0.00029 12.7 0.0 3 29 160 185 158 233 0.81 # 16996 # 17991 # 1 # ID=2_23;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.500 1_8 - 226 HTH_20 PF12840.2 61 0.00017 13.8 0.1 1 1 1.8e-05 0.0013 11.0 0.0 21 46 30 55 18 63 0.85 # 6456 # 7133 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.627 4_2 - 280 Pterin_bind PF00809.17 210 1.8e-58 189.7 0.0 1 1 3e-60 2.1e-58 189.5 0.0 1 210 7 216 7 216 0.98 # 453 # 1292 # 1 # ID=4_2;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.617 2_23 - 332 IstB_IS21 PF01695.12 178 1.9e-05 16.5 0.0 1 1 4.5e-07 3.1e-05 15.8 0.0 44 73 155 184 127 201 0.82 # 16996 # 17991 # 1 # ID=2_23;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.500 1_33 - 422 DNA_pol_lambd_f PF10391.4 52 1.8e-06 19.9 0.1 1 2 3e-07 2.1e-05 16.5 0.0 6 35 182 211 180 216 0.84 # 24870 # 26135 # 1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.546 1_33 - 422 DNA_pol_lambd_f PF10391.4 52 1.8e-06 19.9 0.1 2 2 0.052 3.6 -0.3 0.0 6 20 265 279 262 283 0.85 # 24870 # 26135 # 1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.546 2_23 - 332 GTP_EFTU PF00009.22 188 0.00015 13.6 0.2 1 1 3.5e-06 0.00024 12.9 0.2 2 32 157 187 156 205 0.83 # 16996 # 17991 # 1 # ID=2_23;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.500 # # Program: hmmsearch # Version: 3.1b1 (May 2013) # Pipeline mode: SEARCH # Query file: /tmp/e34c4e3b-2c9b-4681-9b19-8a030f779375 # Target file: checkm_output/bins/pm197/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm197/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/e34c4e3b-2c9b-4681-9b19-8a030f779375 checkm_output/bins/pm197/genes.faa # Current dir: /mnt/data/azomer/reads-for-assembly/files/output/allcontigs/output_1512029421078392887 # Date: Thu Nov 30 09:56:45 2017 # [ok]