# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 4_1 - 106 HTH_IclR PF09339.5 52 5.8e-07 19.2 0.4 1 2 0.05 0.65 -0.2 0.1 7 18 29 40 27 58 0.70 # 2 # 319 # 1 # ID=4_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.538 4_1 - 106 HTH_IclR PF09339.5 52 5.8e-07 19.2 0.4 2 2 1.8e-07 2.4e-06 17.2 0.0 15 40 75 100 71 101 0.86 # 2 # 319 # 1 # ID=4_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.538 4_1 - 106 HTH_22 PF13309.1 64 2.1e-05 14.3 0.6 1 1 4.6e-06 6e-05 12.9 0.2 32 63 73 99 63 100 0.76 # 2 # 319 # 1 # ID=4_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.538 4_1 - 106 HTH_40 PF14493.1 91 2.4e-05 14.6 0.6 1 2 0.044 0.57 0.6 0.0 49 74 33 59 23 70 0.69 # 2 # 319 # 1 # ID=4_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.538 4_1 - 106 HTH_40 PF14493.1 91 2.4e-05 14.6 0.6 2 2 7.8e-06 0.0001 12.6 0.1 7 33 72 98 66 103 0.89 # 2 # 319 # 1 # ID=4_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.538 4_1 - 106 HTH_38 PF13936.1 44 1.2e-07 21.3 1.4 1 2 0.056 0.73 -0.4 0.4 7 20 36 49 35 51 0.80 # 2 # 319 # 1 # ID=4_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.538 4_1 - 106 HTH_38 PF13936.1 44 1.2e-07 21.3 1.4 2 2 2.1e-08 2.8e-07 20.1 0.0 9 41 67 99 65 102 0.93 # 2 # 319 # 1 # ID=4_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.538 4_1 - 106 GerE PF00196.14 58 4.9e-05 12.7 0.1 1 1 7.1e-06 9.2e-05 11.8 0.1 11 35 71 95 69 98 0.93 # 2 # 319 # 1 # ID=4_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.538 4_1 - 106 HTH_Tnp_IS630 PF01710.11 120 5.2e-06 16.2 0.0 1 1 6.6e-07 8.5e-06 15.5 0.0 8 44 68 104 63 105 0.91 # 2 # 319 # 1 # ID=4_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.538 4_1 - 106 HTH_23 PF13384.1 50 1.1e-06 18.3 2.1 1 2 0.086 1.1 -0.8 0.1 6 17 38 49 34 54 0.62 # 2 # 319 # 1 # ID=4_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.538 4_1 - 106 HTH_23 PF13384.1 50 1.1e-06 18.3 2.1 2 2 1.4e-07 1.8e-06 17.6 0.2 5 39 66 100 62 104 0.87 # 2 # 319 # 1 # ID=4_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.538 4_1 - 106 HTH_7 PF02796.10 45 9.5e-15 44.4 0.6 1 1 1.7e-15 2.2e-14 43.2 0.1 1 44 61 101 61 102 0.97 # 2 # 319 # 1 # ID=4_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.538 4_1 - 106 HTH_29 PF13551.1 112 4.4e-06 16.9 0.9 1 2 0.013 0.17 2.2 0.3 24 54 34 63 18 70 0.64 # 2 # 319 # 1 # ID=4_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.538 4_1 - 106 HTH_29 PF13551.1 112 4.4e-06 16.9 0.9 2 2 3.4e-06 4.4e-05 13.7 0.0 4 35 71 101 68 105 0.90 # 2 # 319 # 1 # ID=4_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.538 4_1 - 106 HTH_28 PF13518.1 52 8.3e-06 15.9 0.0 1 1 1.6e-06 2.1e-05 14.6 0.0 8 33 74 99 68 104 0.82 # 2 # 319 # 1 # ID=4_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.538 1_6 - 142 HTH_30 PF13556.1 59 7.8e-05 12.3 0.0 1 1 9.4e-06 0.00012 11.7 0.0 16 39 65 88 58 91 0.88 # 5955 # 6380 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.425 4_1 - 106 CENP-B_N PF04218.8 53 4.8e-05 12.8 0.1 1 1 2.3e-05 0.0003 10.3 0.1 26 47 82 103 67 104 0.86 # 2 # 319 # 1 # ID=4_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.538 4_1 - 106 HTH_26 PF13443.1 63 8.3e-05 12.9 0.0 1 1 1.1e-05 0.00014 12.2 0.0 6 34 74 102 70 105 0.90 # 2 # 319 # 1 # ID=4_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.538 4_1 - 106 HTH_17 PF12728.2 51 0.0001 12.6 1.0 1 2 0.014 0.18 2.3 0.1 25 43 53 71 39 74 0.80 # 2 # 319 # 1 # ID=4_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.538 4_1 - 106 HTH_17 PF12728.2 51 0.0001 12.6 1.0 2 2 0.00011 0.0014 9.0 0.1 6 23 83 100 81 103 0.87 # 2 # 319 # 1 # ID=4_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.538 4_1 - 106 TrmB PF01978.14 68 3.3e-06 16.9 0.0 1 1 4.3e-07 5.6e-06 16.1 0.0 19 44 75 100 69 101 0.89 # 2 # 319 # 1 # ID=4_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.538 4_1 - 106 HTH_20 PF12840.2 61 2.4e-06 17.4 0.1 1 1 2.1e-06 2.7e-05 14.0 0.1 2 43 29 97 28 101 0.93 # 2 # 319 # 1 # ID=4_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.538 # # Program: hmmsearch # Version: 3.1b1 (May 2013) # Pipeline mode: SEARCH # Query file: /tmp/62e77ec4-262a-4746-a216-f81fb23cbdf1 # Target file: checkm_output/bins/pm1969/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm1969/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/62e77ec4-262a-4746-a216-f81fb23cbdf1 checkm_output/bins/pm1969/genes.faa # Current dir: /mnt/data/azomer/reads-for-assembly/files/output/allcontigs/output_1512029421078392887 # Date: Thu Nov 30 09:56:36 2017 # [ok]