# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_4 - 333 Cons_hypoth95 PF03602.10 183 7.3e-09 24.6 0.0 1 2 1.7e-05 0.00014 10.6 0.0 76 129 5 58 2 96 0.75 # 2711 # 3709 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.346 1_4 - 333 Cons_hypoth95 PF03602.10 183 7.3e-09 24.6 0.0 2 2 8.1e-06 6.4e-05 11.7 0.0 36 79 280 322 254 331 0.79 # 2711 # 3709 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.346 1_7 - 144 HTH_22 PF13309.1 64 2.7e-05 13.3 0.1 1 1 1e-05 8.1e-05 11.8 0.1 44 64 5 25 2 25 0.89 # 4742 # 5173 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.454 1_4 - 333 TIGR00095 TIGR00095 194 1.9e-07 19.9 0.0 1 2 2.9e-05 0.00023 9.9 0.0 105 144 25 63 4 114 0.67 # 2711 # 3709 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.346 1_4 - 333 TIGR00095 TIGR00095 194 1.9e-07 19.9 0.0 2 2 0.00011 0.00088 7.9 0.0 52 86 286 319 252 331 0.75 # 2711 # 3709 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.346 1_2 - 80 MarR PF01047.17 59 1.2e-05 14.4 0.0 1 1 2.3e-06 1.8e-05 13.8 0.0 9 37 13 41 9 54 0.90 # 1478 # 1717 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.292 1_7 - 144 HTH_8 PF02954.14 42 3.2e-05 12.9 0.1 1 1 9.1e-06 7.3e-05 11.7 0.1 19 37 4 22 2 25 0.86 # 4742 # 5173 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.454 1_7 - 144 TetR_N PF00440.18 47 5.3e-05 12.3 0.0 1 1 1.3e-05 0.0001 11.3 0.0 15 35 2 22 1 23 0.93 # 4742 # 5173 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.454 1_4 - 333 MethyltransfD12 PF02086.10 260 1e-07 20.9 0.2 1 2 0.00019 0.0015 7.3 0.0 176 209 42 72 6 87 0.72 # 2711 # 3709 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.346 1_4 - 333 MethyltransfD12 PF02086.10 260 1e-07 20.9 0.2 2 2 1.2e-05 0.0001 11.1 0.0 20 53 286 319 273 325 0.84 # 2711 # 3709 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.346 1_4 - 333 Methyltransf_26 PF13659.1 117 1.1e-11 34.2 0.0 1 2 1.3e-09 1e-08 24.6 0.0 54 115 27 98 9 100 0.81 # 2711 # 3709 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.346 1_4 - 333 Methyltransf_26 PF13659.1 117 1.1e-11 34.2 0.0 2 2 0.00025 0.002 7.5 0.0 4 44 290 329 287 331 0.88 # 2711 # 3709 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.346 1_2 - 80 HTH_37 PF13744.1 80 1.2e-05 14.5 0.1 1 1 1.9e-06 1.5e-05 14.1 0.1 18 67 8 56 4 62 0.87 # 1478 # 1717 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.292 1_4 - 333 N6_N4_Mtase PF01555.13 231 1.1e-43 138.6 1.6 1 1 2e-44 1.6e-43 138.1 1.6 1 227 44 322 44 326 0.81 # 2711 # 3709 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.346 1_7 - 144 MerR_1 PF13411.1 69 4.1e-05 12.7 0.1 1 2 4.5e-05 0.00036 9.7 0.0 2 26 5 29 4 52 0.89 # 4742 # 5173 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.454 1_7 - 144 MerR_1 PF13411.1 69 4.1e-05 12.7 0.1 2 2 0.028 0.22 0.8 0.0 40 59 106 125 105 131 0.83 # 4742 # 5173 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.454 1_2 - 80 HTH_25 PF13413.1 62 1.1e-06 17.6 0.1 1 2 3.3e-07 2.7e-06 16.4 0.1 3 33 14 44 12 50 0.92 # 1478 # 1717 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.292 1_2 - 80 HTH_25 PF13413.1 62 1.1e-06 17.6 0.1 2 2 0.012 0.094 1.9 0.0 5 17 42 54 41 59 0.84 # 1478 # 1717 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.292 1_7 - 144 NUMOD1 PF07453.8 37 9.2e-06 14.9 0.2 1 1 3.4e-06 2.7e-05 13.4 0.0 18 36 5 23 4 24 0.93 # 4742 # 5173 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.454 1_7 - 144 HTH_Tnp_IS630 PF01710.11 120 2.7e-06 16.5 0.1 1 1 7.5e-07 6e-06 15.3 0.0 20 58 5 45 2 52 0.82 # 4742 # 5173 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.454 1_2 - 80 HTH_3 PF01381.17 55 1.4e-16 49.5 0.2 1 1 2.2e-17 1.8e-16 49.2 0.2 1 51 13 63 13 67 0.97 # 1478 # 1717 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.292 1_7 - 144 HTH_23 PF13384.1 50 1.2e-06 17.6 0.0 1 1 3.4e-07 2.7e-06 16.4 0.0 18 39 4 25 1 26 0.91 # 4742 # 5173 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.454 1_7 - 144 HTH_7 PF02796.10 45 2.5e-06 16.7 0.2 1 2 6.1e-06 4.9e-05 12.6 0.0 23 43 5 25 4 27 0.90 # 4742 # 5173 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.454 1_7 - 144 HTH_7 PF02796.10 45 2.5e-06 16.7 0.2 2 2 0.014 0.11 1.9 0.0 9 26 108 127 103 127 0.78 # 4742 # 5173 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.454 1_2 - 80 HTH_19 PF12844.2 64 5.6e-15 44.6 0.8 1 1 1.7e-15 7e-15 44.3 0.8 4 54 13 63 12 77 0.91 # 1478 # 1717 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.292 1_4 - 333 HTH_19 PF12844.2 64 4.2e-06 16.2 0.0 1 1 2e-06 8.1e-06 15.3 0.0 1 49 169 222 169 227 0.87 # 2711 # 3709 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.346 1_7 - 144 HTH_psq PF05225.11 45 5.5e-05 12.1 0.1 1 1 1.7e-05 0.00014 10.8 0.1 17 38 4 25 2 30 0.89 # 4742 # 5173 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.454 1_7 - 144 DUF3853 PF12964.2 96 2.5e-05 13.5 0.0 1 1 6.9e-06 5.5e-05 12.4 0.0 48 90 6 50 3 56 0.83 # 4742 # 5173 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.454 1_7 - 144 HTH_28 PF13518.1 52 4.7e-07 19.2 0.1 1 1 2e-07 1.6e-06 17.5 0.0 13 34 4 25 2 31 0.92 # 4742 # 5173 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.454 1_2 - 80 HTH_31 PF13560.1 64 7.8e-08 21.9 0.0 1 1 2.4e-08 9.5e-08 21.6 0.0 7 57 14 63 12 69 0.86 # 1478 # 1717 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.292 1_4 - 333 HTH_31 PF13560.1 64 2e-07 20.6 0.0 1 1 8.2e-08 3.3e-07 19.9 0.0 2 50 168 220 167 226 0.91 # 2711 # 3709 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.346 1_7 - 144 HTH_6 PF01418.12 77 2.9e-05 13.2 0.1 1 1 7.9e-06 6.3e-05 12.1 0.1 34 57 3 26 1 30 0.90 # 4742 # 5173 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.454 1_7 - 144 MerR PF00376.18 38 4e-05 12.6 0.0 1 1 8.5e-06 6.8e-05 11.8 0.0 1 23 5 27 5 32 0.87 # 4742 # 5173 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.454 1_4 - 333 MTS PF05175.9 170 7.4e-05 11.5 0.0 1 2 7.7e-05 0.00062 8.5 0.0 90 153 35 113 19 124 0.76 # 2711 # 3709 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.346 1_4 - 333 MTS PF05175.9 170 7.4e-05 11.5 0.0 2 2 0.049 0.4 -0.6 0.0 31 65 286 318 274 330 0.65 # 2711 # 3709 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.346 1_2 - 80 HTH_26 PF13443.1 63 1.5e-06 17.8 0.3 1 1 3.2e-07 2.5e-06 17.0 0.3 3 52 14 62 13 63 0.91 # 1478 # 1717 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.292 1_7 - 144 HTH_17 PF12728.2 51 5.6e-11 32.0 0.0 1 1 1.2e-11 9.5e-11 31.3 0.0 3 36 5 42 4 53 0.84 # 4742 # 5173 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.454 # # Program: hmmsearch # Version: 3.1b1 (May 2013) # Pipeline mode: SEARCH # Query file: /tmp/54156d5d-c971-4ff0-bbf6-209cd148b241 # Target file: checkm_output/bins/pm1957/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm1957/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/54156d5d-c971-4ff0-bbf6-209cd148b241 checkm_output/bins/pm1957/genes.faa # Current dir: /mnt/data/azomer/reads-for-assembly/files/output/allcontigs/output_1512029421078392887 # Date: Thu Nov 30 09:56:14 2017 # [ok]