# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_13 - 361 ABC_tran PF00005.22 137 5.6e-05 15.0 0.0 1 1 3.3e-06 0.00013 13.9 0.0 7 37 176 206 173 252 0.83 # 11959 # 13041 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.534 1_33 - 104 DUF134 PF02001.11 106 4.4e-05 14.9 0.0 1 1 1.5e-06 5.8e-05 14.6 0.0 57 83 24 50 10 62 0.87 # 26587 # 26898 # -1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.468 1_13 - 361 Sigma54_activat PF00158.21 168 5.9e-05 14.1 0.0 1 1 3.1e-06 0.00012 13.1 0.0 15 43 173 201 161 221 0.86 # 11959 # 13041 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.534 1_13 - 361 FtsK_SpoIIIE PF01580.13 205 5.4e-06 17.5 0.0 1 1 2.3e-07 8.6e-06 16.8 0.0 18 58 156 200 140 202 0.70 # 11959 # 13041 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.534 1_29 - 228 HTH_40 PF14493.1 91 0.00021 13.1 0.1 1 1 1.1e-05 0.00043 12.1 0.1 9 45 162 198 154 213 0.81 # 24023 # 24706 # 1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.368 1_3 - 116 Rad9 PF04139.8 252 2.4e-05 15.1 0.7 1 1 7.4e-07 2.8e-05 14.8 0.7 160 223 7 71 1 78 0.88 # 4213 # 4560 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.371 1_13 - 361 AAA_19 PF13245.1 76 7.3e-05 14.1 0.0 1 1 4.1e-06 0.00016 13.0 0.0 7 35 177 204 171 227 0.79 # 11959 # 13041 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.534 1_5 - 236 CbiA PF01656.18 195 6e-08 23.8 2.4 1 1 3.3e-07 1.3e-05 16.2 2.4 1 165 3 142 3 160 0.72 # 5239 # 5946 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.374 1_31 - 97 Sigma70_r4_2 PF08281.7 54 1e-06 19.8 0.2 1 2 0.028 0.53 1.4 0.0 2 16 10 24 9 25 0.84 # 25969 # 26259 # -1 # ID=1_31;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.443 1_31 - 97 Sigma70_r4_2 PF08281.7 54 1e-06 19.8 0.2 2 2 6.9e-07 1.3e-05 16.2 0.0 28 54 35 61 33 61 0.96 # 25969 # 26259 # -1 # ID=1_31;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.443 1_29 - 228 Sigma70_r4_2 PF08281.7 54 1.1e-05 16.4 0.0 1 1 1.2e-06 2.3e-05 15.4 0.0 21 48 162 188 155 190 0.86 # 24023 # 24706 # 1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.368 1_29 - 228 Terminase_5 PF06056.7 58 0.00031 11.9 0.0 1 1 1.5e-05 0.00057 11.0 0.0 8 32 161 185 158 204 0.86 # 24023 # 24706 # 1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.368 1_13 - 361 AAA_23 PF13476.1 202 0.00031 12.6 6.0 1 2 0.019 0.74 1.6 0.0 130 173 126 169 112 180 0.82 # 11959 # 13041 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.534 1_13 - 361 AAA_23 PF13476.1 202 0.00031 12.6 6.0 2 2 1.9e-05 0.00071 11.4 3.4 22 39 183 200 167 201 0.80 # 11959 # 13041 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.534 1_13 - 361 AAA_24 PF13479.1 213 0.0002 12.5 0.1 1 1 9.1e-06 0.00035 11.7 0.1 2 22 179 199 178 205 0.90 # 11959 # 13041 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.534 1_13 - 361 AAA_30 PF13604.1 196 8.2e-05 13.8 0.0 1 1 4.6e-06 0.00017 12.7 0.0 4 42 166 204 163 213 0.91 # 11959 # 13041 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.534 1_29 - 228 GerE PF00196.14 58 8.5e-12 35.9 0.3 1 1 1.5e-12 2.9e-11 34.1 0.2 3 53 151 201 149 205 0.94 # 24023 # 24706 # 1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.368 1_31 - 97 GerE PF00196.14 58 1.5e-06 19.0 0.0 1 1 1.1e-07 2.1e-06 18.6 0.0 2 51 17 66 16 73 0.89 # 25969 # 26259 # -1 # ID=1_31;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.443 1_11 - 536 TraG-D_C PF12696.2 128 3.5e-26 83.1 0.0 1 1 1.5e-27 5.6e-26 82.5 0.0 1 127 318 441 318 442 0.93 # 10002 # 11609 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.518 1_33 - 104 Sigma70_r4 PF04545.11 50 2e-06 18.6 0.1 1 1 2.1e-07 4.1e-06 17.7 0.1 20 43 24 47 22 51 0.89 # 26587 # 26898 # -1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.468 1_31 - 97 Sigma70_r4 PF04545.11 50 0.00013 12.9 0.0 1 1 1.5e-05 0.00029 11.7 0.0 21 48 34 61 15 62 0.86 # 25969 # 26259 # -1 # ID=1_31;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.443 1_33 - 104 HTH_37 PF13744.1 80 0.00021 12.7 0.0 1 1 1e-05 0.00039 11.8 0.0 25 60 18 52 17 62 0.86 # 26587 # 26898 # -1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.468 1_13 - 361 AAA_22 PF13401.1 131 4.9e-05 15.1 0.0 1 1 2.8e-06 0.00011 14.0 0.0 3 28 179 204 176 235 0.86 # 11959 # 13041 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.534 1_13 - 361 AAA_29 PF13555.1 62 3e-05 15.1 0.0 1 1 2e-06 7.5e-05 13.8 0.0 17 46 175 203 164 210 0.78 # 11959 # 13041 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.534 1_13 - 361 AAA_28 PF13521.1 163 0.00018 13.0 0.1 1 1 1.9e-05 0.00073 11.1 0.1 1 19 182 200 182 217 0.86 # 11959 # 13041 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.534 1_33 - 104 HTH_3 PF01381.17 55 5.5e-13 40.2 0.0 1 1 2e-14 7.5e-13 39.8 0.0 3 54 18 69 17 70 0.95 # 26587 # 26898 # -1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.468 1_29 - 228 HTH_23 PF13384.1 50 1.5e-06 19.4 0.0 1 1 7.4e-08 2.8e-06 18.5 0.0 10 41 159 191 157 197 0.88 # 24023 # 24706 # 1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.368 1_33 - 104 HTH_19 PF12844.2 64 3.5e-08 25.0 0.0 1 1 1.4e-09 5.2e-08 24.5 0.0 11 59 23 71 17 75 0.91 # 26587 # 26898 # -1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.468 1_13 - 361 Mg_chelatase PF01078.16 207 0.00014 12.6 0.0 1 1 7.2e-06 0.00027 11.6 0.0 15 49 173 207 160 224 0.82 # 11959 # 13041 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.534 1_22 - 124 CoA_binding_3 PF13727.1 175 2.9e-05 15.5 0.5 1 1 9.6e-07 3.6e-05 15.2 0.5 18 80 16 83 11 118 0.70 # 21109 # 21480 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.503 1_13 - 361 G-alpha PF00503.15 389 0.00013 12.2 0.0 1 1 4.5e-06 0.00017 11.8 0.0 56 87 168 209 113 232 0.66 # 11959 # 13041 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.534 1_11 - 536 TrwB_AAD_bind PF10412.4 386 2.1e-17 54.3 0.0 1 1 1.2e-18 4.5e-17 53.2 0.0 204 383 267 460 259 463 0.82 # 10002 # 11609 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.518 1_13 - 361 AAA_18 PF13238.1 129 8.2e-05 14.5 0.0 1 1 5.4e-06 0.0002 13.2 0.0 1 18 183 200 183 238 0.87 # 11959 # 13041 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.534 1_29 - 228 HTH_24 PF13412.1 48 2.4e-05 15.3 0.1 1 1 1.2e-06 4.6e-05 14.4 0.1 16 38 165 187 153 193 0.84 # 24023 # 24706 # 1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.368 1_33 - 104 HTH_31 PF13560.1 64 1.1e-06 20.4 0.0 1 1 3.2e-08 1.2e-06 20.2 0.0 14 59 24 68 3 80 0.86 # 26587 # 26898 # -1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.468 1_13 - 361 T2SE PF00437.15 272 3.3e-49 158.7 0.0 1 1 1e-50 3.9e-49 158.4 0.0 10 266 33 323 25 329 0.94 # 11959 # 13041 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.534 1_13 - 361 AAA_17 PF13207.1 121 2.5e-07 23.1 0.0 1 1 1.6e-08 6.2e-07 21.8 0.0 2 32 183 215 182 274 0.74 # 11959 # 13041 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.534 1_13 - 361 Pox_A32 PF04665.7 241 0.00018 12.3 0.0 1 1 7.8e-06 0.0003 11.6 0.0 10 33 177 200 166 216 0.86 # 11959 # 13041 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.534 1_29 - 228 HTH_Tnp_ISL3 PF13542.1 52 7.6e-06 16.7 0.0 1 1 4e-07 1.5e-05 15.7 0.0 20 48 159 187 155 189 0.84 # 24023 # 24706 # 1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.368 1_20 - 227 GrpE PF01025.14 166 1.2e-05 16.4 0.3 1 2 3.2e-07 1.2e-05 16.4 0.3 12 111 39 139 32 149 0.83 # 17975 # 18655 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.471 1_20 - 227 GrpE PF01025.14 166 1.2e-05 16.4 0.3 2 2 0.061 2.3 -0.8 3.4 26 69 175 217 146 219 0.67 # 17975 # 18655 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.471 1_13 - 361 AAA_33 PF13671.1 143 0.0002 12.8 0.0 1 1 1.3e-05 0.00048 11.6 0.0 2 25 183 207 183 250 0.82 # 11959 # 13041 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.534 1_11 - 536 T4SS-DNA_transf PF02534.9 469 4.3e-64 208.2 0.0 1 1 1.5e-65 5.6e-64 207.9 0.0 25 456 32 477 11 484 0.86 # 10002 # 11609 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.518 1_33 - 104 HTH_26 PF13443.1 63 1.1e-06 20.4 0.0 1 1 4e-08 1.5e-06 19.9 0.0 4 51 18 64 17 68 0.91 # 26587 # 26898 # -1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.468 1_29 - 228 HTH_17 PF12728.2 51 0.00015 13.6 0.0 1 1 9.3e-06 0.00035 12.4 0.0 2 23 167 188 166 193 0.89 # 24023 # 24706 # 1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.368 1_27 - 156 TIGR00922 TIGR00922 172 2e-05 15.7 0.0 1 1 7.2e-07 2.8e-05 15.3 0.0 56 110 53 107 4 153 0.83 # 22870 # 23337 # -1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.376 1_29 - 228 HTH_11 PF08279.7 55 5.6e-05 14.3 0.1 1 1 3e-06 0.00012 13.3 0.1 4 38 158 189 156 194 0.87 # 24023 # 24706 # 1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.368 1_33 - 104 MarR_2 PF12802.2 62 0.00019 12.7 0.0 1 2 3.1e-05 0.0012 10.1 0.0 21 43 24 46 3 47 0.88 # 26587 # 26898 # -1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.468 1_33 - 104 MarR_2 PF12802.2 62 0.00019 12.7 0.0 2 2 0.041 1.6 0.1 0.0 3 19 51 67 50 78 0.80 # 26587 # 26898 # -1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.468 1_31 - 97 HTH_Crp_2 PF13545.1 76 1.1e-05 16.8 0.0 1 1 8.3e-07 1.6e-05 16.3 0.0 3 54 12 59 9 67 0.80 # 25969 # 26259 # -1 # ID=1_31;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.443 1_33 - 104 HTH_Crp_2 PF13545.1 76 1.7e-05 16.2 0.0 1 1 1.5e-06 2.8e-05 15.4 0.0 26 50 22 46 11 57 0.89 # 26587 # 26898 # -1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.468 1_29 - 228 HTH_Mga PF08280.6 59 2.4e-06 18.9 0.3 1 1 1.9e-07 7.4e-06 17.3 0.2 18 43 165 190 153 193 0.84 # 24023 # 24706 # 1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.368 1_29 - 228 Phage_terminase PF10668.4 60 0.00029 12.2 0.1 1 1 1.7e-05 0.00066 11.1 0.1 22 41 166 185 163 198 0.89 # 24023 # 24706 # 1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.368 1_21 - 836 AAA_10 PF12846.2 304 7.2e-17 53.2 0.0 1 1 6.4e-18 1.2e-16 52.5 0.0 2 297 425 710 424 712 0.88 # 18645 # 21152 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.505 1_13 - 361 AAA_10 PF12846.2 304 8.2e-05 13.6 0.1 1 1 8.5e-06 0.00016 12.7 0.1 3 22 182 201 180 205 0.90 # 11959 # 13041 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.534 1_13 - 361 IstB_IS21 PF01695.12 178 1.8e-06 19.0 0.0 1 1 8.5e-08 3.2e-06 18.2 0.0 11 67 143 200 134 203 0.74 # 11959 # 13041 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.534 1_7 - 175 SSB PF00436.20 104 3.2e-45 143.9 0.7 1 1 1.1e-46 4e-45 143.6 0.7 1 103 6 112 6 113 0.97 # 6953 # 7477 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.570 # # Program: hmmsearch # Version: 3.1b1 (May 2013) # Pipeline mode: SEARCH # Query file: /tmp/fe56e42e-db9f-429f-a2a0-7044d3cdf657 # Target file: checkm_output/bins/pm1954/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm1954/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/fe56e42e-db9f-429f-a2a0-7044d3cdf657 checkm_output/bins/pm1954/genes.faa # Current dir: /mnt/data/azomer/reads-for-assembly/files/output/allcontigs/output_1512029421078392887 # Date: Thu Nov 30 09:56:14 2017 # [ok]